mRNA_D-herbacea_F_contig119.1335.1 (mRNA) Desmarestia herbacea DmunF female
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Overview
Homology
BLAST of mRNA_D-herbacea_F_contig119.1335.1 vs. uniprot
Match: D7FRJ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRJ4_ECTSI) HSP 1 Score: 157 bits (397), Expect = 4.020e-42 Identity = 88/136 (64.71%), Postives = 99/136 (72.79%), Query Frame = 1
Query: 40 GLASSATAFFVPSCSPRLSVRPSSTTA---RAQE---AAAASPGSSDDACPGYPRCSGEYREKGCDGTGRRVLVMMLTPCWIAGGVGALLPWLPVKAYRPCPSFVEAKYKYSRQGQSLNEVVFARREGTMADISLE 429
GL SAT F V SP R + TA AQE A A PGSSDDACPGYPRCSGEYR++GCDGTGR I+GGVGAL+PWLP+KAYRPCPSF EAKYKY+RQGQSLNEVVFARR+GTM DI+++
Sbjct: 14 GLIPSATGFLVVPRSPPNFSRQTCRTATALHAQEEDAAVTAPPGSSDDACPGYPRCSGEYRDRGCDGTGR-----------ISGGVGALVPWLPIKAYRPCPSFTEAKYKYTRQGQSLNEVVFARRQGTMDDITMD 138
BLAST of mRNA_D-herbacea_F_contig119.1335.1 vs. uniprot
Match: A0A6H5KYB9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYB9_9PHAE) HSP 1 Score: 149 bits (375), Expect = 3.990e-39 Identity = 69/93 (74.19%), Postives = 79/93 (84.95%), Query Frame = 1
Query: 151 GSSDDACPGYPRCSGEYREKGCDGTGRRVLVMMLTPCWIAGGVGALLPWLPVKAYRPCPSFVEAKYKYSRQGQSLNEVVFARREGTMADISLE 429
GSSDD CPGYPRCSGEYR++GCDGTGR I+GGVGAL+PWLP+KAYRPCPSF EAKYKY+RQGQSLNEVVFARR+GTM DI+++
Sbjct: 55 GSSDDVCPGYPRCSGEYRDRGCDGTGR-----------ISGGVGALVPWLPIKAYRPCPSFTEAKYKYTRQGQSLNEVVFARRQGTMDDITMD 136
BLAST of mRNA_D-herbacea_F_contig119.1335.1 vs. uniprot
Match: A0A1X6PGH9_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PGH9_PORUM) HSP 1 Score: 72.8 bits (177), Expect = 5.520e-12 Identity = 39/85 (45.88%), Postives = 52/85 (61.18%), Query Frame = 1
Query: 181 PRCSGEYRE---KGCDGTGRRVLVMMLTPCWIAGGVGALLPWLPVKAYRPCPSFVEAKYKYSRQGQSLNEVVFARREGTMADISL 426
PRC R +GCDG GR + GG+GA+LP+ P+KAYRPCP FV KY+R+GQSL+E+ F R+ G D+S+
Sbjct: 34 PRCRTCGRATVARGCDGAGR-----------VTGGLGAVLPFWPIKAYRPCPDFVAVGGKYTRKGQSLDEIAFGRK-GDGDDVSI 106
BLAST of mRNA_D-herbacea_F_contig119.1335.1 vs. uniprot
Match: A0A7S1UYB2_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UYB2_9STRA) HSP 1 Score: 70.1 bits (170), Expect = 7.330e-11 Identity = 30/61 (49.18%), Postives = 42/61 (68.85%), Query Frame = 1
Query: 214 CDGTGRRVLVMMLTPCWIAGGVGALLPWLPVKAYRPCPSFVEAKYKYSRQGQSLNEVVFAR 396
CDG+GR IAGG+GA++PW+P+KAYRPCP+F++ Y+R GQ L+E+ F R
Sbjct: 73 CDGSGR-----------IAGGIGAVVPWIPIKAYRPCPNFIDKGGIYTRAGQGLDEIAFGR 122
BLAST of mRNA_D-herbacea_F_contig119.1335.1 vs. uniprot
Match: A0A835Z981_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z981_9STRA) HSP 1 Score: 72.0 bits (175), Expect = 7.610e-11 Identity = 42/99 (42.42%), Postives = 50/99 (50.51%), Query Frame = 1
Query: 169 CPGYPRCSGEYREKGCDGTGRRVLVMMLT------------PCWIAGGVGALLPWL----------PVKAYRPCPSFVEAKYKYSRQGQSLNEVVFARR 399
CPG+ +C+GE+R KGCDGTG L L C A+L L ++AYRPCPSF A Y Y RQGQSLNEVVF +
Sbjct: 66 CPGFAQCNGEWRSKGCDGTGDNALHHYLRCANNHAHLDKNYRCCSRSADSAVLASLHADTTCTFARTLQAYRPCPSFQAAGYNYRRQGQSLNEVVFGSK 164
BLAST of mRNA_D-herbacea_F_contig119.1335.1 vs. uniprot
Match: A0A7S2W5C1_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2W5C1_9STRA) HSP 1 Score: 69.7 bits (169), Expect = 9.510e-11 Identity = 26/44 (59.09%), Postives = 37/44 (84.09%), Query Frame = 1
Query: 265 IAGGVGALLPWLPVKAYRPCPSFVEAKYKYSRQGQSLNEVVFAR 396
IAGG+GA+ PW+P+KA+RPCP+F+EA +Y+R GQ L+E+ F R
Sbjct: 70 IAGGIGAIFPWIPIKAFRPCPNFIEAGGRYTRTGQPLDEIAFGR 113
BLAST of mRNA_D-herbacea_F_contig119.1335.1 vs. uniprot
Match: A0A5J4Z339_PORPP (Uncharacterized protein n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z339_PORPP) HSP 1 Score: 68.2 bits (165), Expect = 3.370e-10 Identity = 35/76 (46.05%), Postives = 42/76 (55.26%), Query Frame = 1
Query: 169 CPGYPRCSGEYREKGCDGTGRRVLVMMLTPCWIAGGVGALLPWLPVKAYRPCPSFVEAKYKYSRQGQSLNEVVFAR 396
CPG R G R GCDG+GR + GG+G +L W P+KAYRPC V+ K Y R GQSL E+ F R
Sbjct: 63 CPGCGREEGVKR--GCDGSGR-----------VVGGLGVVLKWWPIKAYRPCDELVKRKGNYKRAGQSLEEIAFGR 125
BLAST of mRNA_D-herbacea_F_contig119.1335.1 vs. uniprot
Match: A0A7R9ZQN7_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZQN7_9STRA) HSP 1 Score: 67.0 bits (162), Expect = 6.660e-10 Identity = 29/61 (47.54%), Postives = 38/61 (62.30%), Query Frame = 1
Query: 214 CDGTGRRVLVMMLTPCWIAGGVGALLPWLPVKAYRPCPSFVEAKYKYSRQGQSLNEVVFAR 396
CDG+GR I GG+G + PW P+KAYRPCP+F+E Y R GQ+L+E+ F R
Sbjct: 62 CDGSGR-----------ILGGIGVIFPWWPIKAYRPCPNFIEKGGLYQRSGQALDEIAFGR 111
BLAST of mRNA_D-herbacea_F_contig119.1335.1 vs. uniprot
Match: A0A803R6P6_CANSA (Uncharacterized protein n=2 Tax=Cannabis sativa TaxID=3483 RepID=A0A803R6P6_CANSA) HSP 1 Score: 67.8 bits (164), Expect = 7.250e-10 Identity = 44/108 (40.74%), Postives = 55/108 (50.93%), Query Frame = 1
Query: 106 SSTTARAQEAAAASPGSSDDAC---------PGYPRCSGEYREKGCDGTGRRVLVMMLTPCWIAGGVGAL--LPWLPVKAYRPCPSFVEAKYKYSRQGQSLNEVVFAR 396
SS++ R + A+ GSSDD+ G C E EKGC+G GR I GG+ W P+KAYRPCP FVE+ +Y R GQSL+EV F R
Sbjct: 46 SSSSTRCRLASVVEQGSSDDSAMEDGNNLSLSGCKACGREEVEKGCNGEGR-----------IQGGIATFPGFGWWPIKAYRPCPGFVESGGRYKRTGQSLDEVAFGR 142
BLAST of mRNA_D-herbacea_F_contig119.1335.1 vs. uniprot
Match: A0A6D2IJ81_9BRAS (Uncharacterized protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2IJ81_9BRAS) HSP 1 Score: 67.0 bits (162), Expect = 1.040e-9 Identity = 36/81 (44.44%), Postives = 45/81 (55.56%), Query Frame = 1
Query: 160 DDACPGYPRCSGEYREKGCDGTGRRVLVMMLTPCWIAGGVGAL--LPWLPVKAYRPCPSFVEAKYKYSRQGQSLNEVVFAR 396
DD G C E +E GC+G GR I GG+ + W P+KAYRPCP+FVEA +Y R GQS++EV F R
Sbjct: 58 DDTFSGCRGCGKEEKESGCNGDGR-----------IQGGIATVPGFGWWPIKAYRPCPAFVEAGGRYRRIGQSMDEVAFGR 127 The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig119.1335.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-herbacea_F_contig119.1335.1 >prot_D-herbacea_F_contig119.1335.1 ID=prot_D-herbacea_F_contig119.1335.1|Name=mRNA_D-herbacea_F_contig119.1335.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=176bp MTRLSVFIASVSLGLASSATAFFVPSCSPRLSVRPSSTTARAQEAAAASPback to top mRNA from alignment at D-herbacea_F_contig119:578922..582938+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-herbacea_F_contig119.1335.1 ID=mRNA_D-herbacea_F_contig119.1335.1|Name=mRNA_D-herbacea_F_contig119.1335.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=4017bp|location=Sequence derived from alignment at D-herbacea_F_contig119:578922..582938+ (Desmarestia herbacea DmunF female)back to top Coding sequence (CDS) from alignment at D-herbacea_F_contig119:578922..582938+ >mRNA_D-herbacea_F_contig119.1335.1 ID=mRNA_D-herbacea_F_contig119.1335.1|Name=mRNA_D-herbacea_F_contig119.1335.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=1056bp|location=Sequence derived from alignment at D-herbacea_F_contig119:578922..582938+ (Desmarestia herbacea DmunF female)back to top |