mRNA_D-herbacea_F_contig119.1332.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig119.1332.1
Unique NamemRNA_D-herbacea_F_contig119.1332.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig119.1332.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig119contigD-herbacea_F_contig119:543205..545393 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons3
Model size374
Cds size231
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig119.1332.1prot_D-herbacea_F_contig119.1332.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig119 543205..544261 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927574.815941-CDS-D-herbacea_F_contig119:543204..5433071622927574.815941-CDS-D-herbacea_F_contig119:543204..543307Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig119 543205..543307 +
1690790240.555974-CDS-D-herbacea_F_contig119:543204..5433071690790240.555974-CDS-D-herbacea_F_contig119:543204..543307Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig119 543205..543307 +
1622927574.8325908-CDS-D-herbacea_F_contig119:544133..5442611622927574.8325908-CDS-D-herbacea_F_contig119:544133..544261Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig119 544134..544261 +
1690790240.5636709-CDS-D-herbacea_F_contig119:544133..5442611690790240.5636709-CDS-D-herbacea_F_contig119:544133..544261Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig119 544134..544261 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927574.8468795-UTR-D-herbacea_F_contig119:544261..5443251622927574.8468795-UTR-D-herbacea_F_contig119:544261..544325Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig119 544262..544325 +
1690790240.5708487-UTR-D-herbacea_F_contig119:544261..5443251690790240.5708487-UTR-D-herbacea_F_contig119:544261..544325Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig119 544262..544325 +
1622927574.8633807-UTR-D-herbacea_F_contig119:545315..5453931622927574.8633807-UTR-D-herbacea_F_contig119:545315..545393Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig119 545316..545393 +
1690790240.5782154-UTR-D-herbacea_F_contig119:545315..5453931690790240.5782154-UTR-D-herbacea_F_contig119:545315..545393Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig119 545316..545393 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig119.1332.1

>prot_D-herbacea_F_contig119.1332.1 ID=prot_D-herbacea_F_contig119.1332.1|Name=mRNA_D-herbacea_F_contig119.1332.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=77bp
QASLLLRAQLLTFFQTKSRLHLSNSDRSTSKRKNVVLHYSGERNYSWALL
VQHERGESSRGRCSRPSSTYLPTSAR*
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mRNA from alignment at D-herbacea_F_contig119:543205..545393+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig119.1332.1 ID=mRNA_D-herbacea_F_contig119.1332.1|Name=mRNA_D-herbacea_F_contig119.1332.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=2189bp|location=Sequence derived from alignment at D-herbacea_F_contig119:543205..545393+ (Desmarestia herbacea DmunF female)
CAAGCTTCCCTTCTTCTTCGTGCTCAGTTATTGACCTTCTTTCAGACAAA
GAGCCGACTCCACCTCTCGAACAGTGATAGAAGCACATCGAAACGCAAGA
ACGGTAAGCCTTTGTTTGGTGCCGACGATGGAGGATGCTTTGGGCCTCTA
TAGACTAGACTATAATACTCGTACTACTACTGTGTAACTTGTCGGGCAAC
AATCTCAAGGACTACTCAGTCTCACATTAAATTATACCAGGTATAGTATA
AGTATGCTATCATATATCAATATTGCTTCCAGTTTGTTCGACTCTATCAT
TGTCGTGGTACTTCCCAGAGACCCTTCGGGCCCACCCAGAAACCGTTCTC
CGTACTGAGCGAGGTAGCATAGGGCCCTTCTCACTCCAATACCTATGGTA
GGATGGGGCTACTGTTGTTGTTGTTGTTGTTGTTGTGCGCTTGACCGAAC
AACGTGTGGCCGTGCGAAGTGTGTTGGTGTATTTTCAGCACAACAGCATA
CTTTTTCACGAAATTTGCCTTCTTCTTCGTTGTTACCACTATCATACGTC
GTTCTCGAGACGTTCAACGTTCTTCTGATGCTTGGCGTAAACGCGAGACC
TTGAGCACACGGGGGCCTCAAACAAGTGGAGAGCACCCACCTGCCCACAC
GTCCTCACCCACACCGCTAAAACTTTAGTCGTATCACGCCTGCGCCTGTT
GATAGCCTTCCAATACTCCTTCTTTCTCTGATGTGGGGAGACTAACTCGT
GGTCAGCGGCATGATGGCTGTGAAACTGAGTAAACGCACCCCGCGCGTAC
TAGCCCGCACGAGCTTTAGTAGTAGTCTGTCTGTTTCTGGATGCAAGTGT
GATGTATCATCTTAACACCCTCCCTGCGCGCTCTCCCATCATTGTGTGTT
TTGTTGATGCTACTACTACTGCTGTGCAGTTGTTCTACACTACAGCGGCG
AACGAAACTACTCGTGGGCGCTACTCGTACAACACGAGCGAGGAGAGTCT
TCTCGAGGAAGGTGTTCACGTCCAAGTAGTACGTACTTGCCGACCTCAGC
ACGCTAGATCAAGGTCGATCGACATGGCGCAGCACGCTAACTCCGCAGAT
GGCGAGGTGCGTCCGTCCGAGGTGTGTATGATACGCAAGGCAGTATTTTT
ATGGATACTCGAATGCTTCAGGAGACGCGTTTTGAACAGTGAGATTACGA
CAAACGACGATCACGTTTCCGGCGACGAAGAAACCCATCCGGGATAGGTC
GAGGGGTCTCTGCTGCAGGATATAGTAGTAGCGCCTTGATTTCAATTACT
AATAATACATCACCTACTGTGACGTTCCAAACTGGTTCGGGACACGGGCA
ATAATCTCCAATTCATTACTACTACTACTGTGCGATATTTCGTTACGCGC
ATGGCTCGAGATAAGAATAAGGTCGCGGTACGGTGCATCCACTTTGTTTC
ACGCCGTTTCGCATCGGACTTGTAATTTTACTTTCATACTCCATATATAT
ACAGACTGGCCTATAGAGCTAAACCTGAACCTTGCCGCGCCGTTCCAACG
AACTAACTGTTGTTATTTTTACCATTATTATTTTGTTTTTTTTTGTGTGT
GTATGAAGGGGTGGCGCAGTGGTCTAGTGGTTTGGGTGTTGCCTCTGTTG
GCGGAAGTTGGGGGTTCGATTCCCCGTGGCACTTTTCTGTGCCATCTTCC
GTCGCGGAAAACGCGAGAGCGTGAGTAAGCACAAGTCGACGAAGAAAGTT
AACGAAGGGAAGCAAGTGCTGCACTCTTCTCGCGATAAAAATGTAGGCAC
GTACCGTAGTGGGAAGGCGGGAGGAGCGCCTACTATGTGACCCCGGATCT
GAGTTACGAAAGAGAGATGGAGCTAGAGAAAGAATAGGGCGAAGAGATAA
CAAATGAGACGGCGAGAAAAAAAAAAAATGTTCTTTGTGTTGTTATTGAT
TGCCTATTTTTTTCAGGTGACTGAGTACATCGGTTTATACATTATAGTAT
CATAATATCCAGCCTCGTGCCAATCTGTTGTTATTTTGTATTCTAATACT
AATGTTACGTATTTTGTGTGTGTGTGCGTGTTTTTGTGTTTTTACCTCTC
CTTCTGTTCAGGCGACCGAGGAAATCGCCCAGAACAGGCATACGACCACC
GGGGCGATGGGTCTCGCCCCAAGCCGCCCCAACCACGAG
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Coding sequence (CDS) from alignment at D-herbacea_F_contig119:543205..545393+

>mRNA_D-herbacea_F_contig119.1332.1 ID=mRNA_D-herbacea_F_contig119.1332.1|Name=mRNA_D-herbacea_F_contig119.1332.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=462bp|location=Sequence derived from alignment at D-herbacea_F_contig119:543205..545393+ (Desmarestia herbacea DmunF female)
CAAGCTTCCCTTCTTCTTCGTGCTCAGTTATTGACCTTCTTTCAGACAAA
GAGCCGACTCCACCTCTCGAACAGTGATAGAAGCACATCGAAACGCAAGA
ACGCAAGCTTCCCTTCTTCTTCGTGCTCAGTTATTGACCTTCTTTCAGAC
AAAGAGCCGACTCCACCTCTCGAACAGTGATAGAAGCACATCGAAACGCA
AGAACGTTGTTCTACACTACAGCGGCGAACGAAACTACTCGTGGGCGCTA
CTCGTACAACACGAGCGAGGAGAGTCTTCTCGAGGAAGGTGTTCACGTCC
AAGTAGTACGTACTTGCCGACCTCAGCACGCTAGTTGTTCTACACTACAG
CGGCGAACGAAACTACTCGTGGGCGCTACTCGTACAACACGAGCGAGGAG
AGTCTTCTCGAGGAAGGTGTTCACGTCCAAGTAGTACGTACTTGCCGACC
TCAGCACGCTAG
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