mRNA_D-herbacea_F_contig119.1317.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig119.1317.1
Unique NamemRNA_D-herbacea_F_contig119.1317.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig119.1317.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig119contigD-herbacea_F_contig119:116159..116380 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size222
Cds size207
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927575.3880703-UTR-D-herbacea_F_contig119:116158..1161731622927575.3880703-UTR-D-herbacea_F_contig119:116158..116173Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig119 116159..116173 +
1690790240.7739096-UTR-D-herbacea_F_contig119:116158..1161731690790240.7739096-UTR-D-herbacea_F_contig119:116158..116173Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig119 116159..116173 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927575.4006958-CDS-D-herbacea_F_contig119:116173..1163801622927575.4006958-CDS-D-herbacea_F_contig119:116173..116380Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig119 116174..116380 +
1690790240.7894447-CDS-D-herbacea_F_contig119:116173..1163801690790240.7894447-CDS-D-herbacea_F_contig119:116173..116380Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig119 116174..116380 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig119.1317.1prot_D-herbacea_F_contig119.1317.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig119 116174..116380 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig119.1317.1

>prot_D-herbacea_F_contig119.1317.1 ID=prot_D-herbacea_F_contig119.1317.1|Name=mRNA_D-herbacea_F_contig119.1317.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=69bp
MSVYSMGASTFSTSDDSSDGYVGCFTDVRKSRVLRAHNTKSEVMTATTCK
DYCRKMGSTLCGLQYGEE*
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mRNA from alignment at D-herbacea_F_contig119:116159..116380+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig119.1317.1 ID=mRNA_D-herbacea_F_contig119.1317.1|Name=mRNA_D-herbacea_F_contig119.1317.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=222bp|location=Sequence derived from alignment at D-herbacea_F_contig119:116159..116380+ (Desmarestia herbacea DmunF female)
GGCGGATACTTATCTATGAGCGTGTACAGCATGGGCGCATCTACGTTCTC
CACCTCCGATGACTCTAGCGACGGCTACGTCGGGTGCTTCACGGATGTGA
GGAAGTCAAGGGTGCTGCGGGCTCACAACACAAAGAGCGAGGTCATGACG
GCCACGACCTGCAAGGACTACTGTAGGAAGATGGGGAGTACGCTGTGCGG
TCTGCAGTACGGCGAAGAGTGA
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Coding sequence (CDS) from alignment at D-herbacea_F_contig119:116159..116380+

>mRNA_D-herbacea_F_contig119.1317.1 ID=mRNA_D-herbacea_F_contig119.1317.1|Name=mRNA_D-herbacea_F_contig119.1317.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=414bp|location=Sequence derived from alignment at D-herbacea_F_contig119:116159..116380+ (Desmarestia herbacea DmunF female)
ATGAGCGTGTACAGCATGGGCGCATCTACGTTCTCCACCTCCGATGACTC
TAGCGACGGCTACGTCGGGTGCTTCACGGATGTGAGGAAGTCAAGGGTGC
TGCGGGCTCACAACACAAAGAGCGAGGTCATGACGGCCACGACCTGCAAG
GACTACTGTAGGAAGATGGGGAGTACGCTGTGCGGTCTGCAGTACGGCGA
AGAGTGAATGAGCGTGTACAGCATGGGCGCATCTACGTTCTCCACCTCCG
ATGACTCTAGCGACGGCTACGTCGGGTGCTTCACGGATGTGAGGAAGTCA
AGGGTGCTGCGGGCTCACAACACAAAGAGCGAGGTCATGACGGCCACGAC
CTGCAAGGACTACTGTAGGAAGATGGGGAGTACGCTGTGCGGTCTGCAGT
ACGGCGAAGAGTGA
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