mRNA_D-herbacea_F_contig119.1316.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig119.1316.1
Unique NamemRNA_D-herbacea_F_contig119.1316.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
[Close]
BLAST of mRNA_D-herbacea_F_contig119.1316.1 vs. uniprot
Match: D7FJP0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJP0_ECTSI)

HSP 1 Score: 130 bits (327), Expect = 6.140e-34
Identity = 71/151 (47.02%), Postives = 96/151 (63.58%), Query Frame = 1 
Query:    1 MTPSWPGE-DLEPLRVQEWLYYENLLQGTVEAVRRQNGPDVKIAFMTSHVIADEKYTGDFAQIFDAYRVGAGNETVRAECNEQI------AAAAADRVSSFYYFDWKGGTMDDIDGYIDDELTPE----FAAEKFCEYALMDRRGSLELNR 420
            M P WP    +EPLRVQ WL YE+LL+G V+AVR ++GP+V++ FMT+H IADE++ G++  I  AYR G GN T+RAEC +Q       AA+  D    F Y DW G    DI  Y+   + PE    F  + +CE A++DRRGSL+L+R
Sbjct:   91 MYPHWPEMYPMEPLRVQSWLNYESLLEGVVQAVRYKSGPNVRVVFMTNHAIADERFQGEYKDIRAAYREGPGNTTIRAECQDQNNTQVKQAASVKDAHGDFSYSDWHGAP--DIAEYM---VYPEGQGLFTVDTYCEEAILDRRGSLQLSR 236
[Close]
BLAST of mRNA_D-herbacea_F_contig119.1316.1 vs. uniprot
Match: D7FKK8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKK8_ECTSI)

HSP 1 Score: 81.3 bits (199), Expect = 6.330e-17
Identity = 47/104 (45.19%), Postives = 62/104 (59.62%), Query Frame = 1 
Query:  133 MTSHVIADEKYTGDFAQIFDAYRVGAGNETVRAEC----NEQIAAAAADRVSSFYYFDWKGGTMDDIDGYIDDELTPE----FAAEKFCEYALMDRRGSLELNR 420
            MT+H IADE +TG++ +I  AYR G GN T+RAEC    N Q+ AA+      F Y DW G    DI  YI     PE    F  + +CE A++DRRGSL+++R
Sbjct:    1 MTNHAIADELFTGEYKEIRAAYREGEGNATIRAECQREDNVQVRAASVGNPGDFRYSDWHG--KPDIAEYI---THPEGQGLFTVDTYCEEAILDRRGSLQMSR 99
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig119.1316.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FJP0_ECTSI6.140e-3447.02Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FKK8_ECTSI6.330e-1745.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig119contigD-herbacea_F_contig119:19791..22484 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size420
Cds size420
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig119.1316.1prot_D-herbacea_F_contig119.1316.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig119 19791..22484 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927575.3166747-CDS-D-herbacea_F_contig119:19790..198401622927575.3166747-CDS-D-herbacea_F_contig119:19790..19840Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig119 19791..19840 +
1690790240.7394738-CDS-D-herbacea_F_contig119:19790..198401690790240.7394738-CDS-D-herbacea_F_contig119:19790..19840Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig119 19791..19840 +
1622927575.3296666-CDS-D-herbacea_F_contig119:20935..210071622927575.3296666-CDS-D-herbacea_F_contig119:20935..21007Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig119 20936..21007 +
1690790240.749795-CDS-D-herbacea_F_contig119:20935..210071690790240.749795-CDS-D-herbacea_F_contig119:20935..21007Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig119 20936..21007 +
1622927575.3390253-CDS-D-herbacea_F_contig119:21673..217971622927575.3390253-CDS-D-herbacea_F_contig119:21673..21797Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig119 21674..21797 +
1690790240.7572675-CDS-D-herbacea_F_contig119:21673..217971690790240.7572675-CDS-D-herbacea_F_contig119:21673..21797Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig119 21674..21797 +
1622927575.3513896-CDS-D-herbacea_F_contig119:22310..224841622927575.3513896-CDS-D-herbacea_F_contig119:22310..22484Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig119 22311..22484 +
1690790240.7658594-CDS-D-herbacea_F_contig119:22310..224841690790240.7658594-CDS-D-herbacea_F_contig119:22310..22484Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig119 22311..22484 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig119.1316.1

>prot_D-herbacea_F_contig119.1316.1 ID=prot_D-herbacea_F_contig119.1316.1|Name=mRNA_D-herbacea_F_contig119.1316.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=140bp
MTPSWPGEDLEPLRVQEWLYYENLLQGTVEAVRRQNGPDVKIAFMTSHVI
ADEKYTGDFAQIFDAYRVGAGNETVRAECNEQIAAAAADRVSSFYYFDWK
GGTMDDIDGYIDDELTPEFAAEKFCEYALMDRRGSLELNR
back to top

mRNA from alignment at D-herbacea_F_contig119:19791..22484+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig119.1316.1 ID=mRNA_D-herbacea_F_contig119.1316.1|Name=mRNA_D-herbacea_F_contig119.1316.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=2694bp|location=Sequence derived from alignment at D-herbacea_F_contig119:19791..22484+ (Desmarestia herbacea DmunF female)
ATGACGCCGAGCTGGCCGGGGGAGGATCTGGAACCGTTGCGAGTTCAAGA
GTGAGTACGGTTGCGGAATGTTTTCAGTTGTTACTGTTATTGTTGTCGAT
GTCCTTTTGTTAGTCCAACGCCAGAACGTAACTGGACCGAGTCCGGCGGG
CGTAGCCTGGGTTGTTGTTTTGTGGGTGGGCTTTTGCGAGCAAATCCCGC
ACTACCCGGGGGAGGGGGGGCGGTAACGTTCGTTCTAAATTGCCTCTTCG
GGTGGCTATGTCCATTATGCCAACGGCTCTCCGACGTGCCCGCGCTGTAA
TGGCAACGTTGTATCCTACTATGGTTGATCAGGGGTAAATCGGCAATGGT
TGATCACGACGCGGCTACCACAAGTCGCGGAAAATTGTGGAGCGTAAGCT
TTTTACCAAGCCGGCGAAGGATAAAAAAAGAACGGTTGGTGTTGTTGTTG
TTGTTGAAATGCTGTCGCTGTTGGCACTGCACACTTCTAGCTTGCAGCTC
GTTTCATCCACGTTCTCAATAGTTTACTTCTGTTTCTTTCTTTGCGTTTG
CCGTTTGTCCCCACAAAGGCTACGGTAGTATCAACTACGTTAGTACCTCC
GCTCGCCGAACCTCATCCGATTGTGTGAAATCACACCCTTGTGCTTGCAC
AATATCACAGAAAACGTTTGCCCGTAAATATTTTTGGCCAAAAGTGTCGG
CTCCTCCCTTTATCGATACGCGGTACTTTTTCATGCATATTGCGGGGTGG
GGGGTGGTGAGCTAGTACAACAAAGGAGCGAGACGCTGCCGTCTACTTCT
TGCTCACGGGAGGTAGACAACGAGTAGTATCGATAGCAGCACCAGCAGAA
TGGGATTGCCCCGTCCGCCTCGAGTTCTACGCGATGGTCGACTACCGCCA
TTGTCCGGTGTTTTCTGTTTTGCGTGATGCGGGAGGAAGGCTTGCAAATT
TCAGCACCGTTAAACAACGAGTTGTGTGTTACCATGGCTTGCGCCTGATG
GCTTAGCTGCCAGGGGGAGATGTCCTGAATGTGTCACCGTAATTCGTACA
TACGATACGAGAAGGAACCCGGGAGACTGTTCCCGGTAGGTCCTTCGTCG
CATGCTGATTTACAATGCGTCCGCAACCGGTTACCATCTCTGCAGGTGGC
TATACTACGAGAACCTGCTGCAGGGGACAGTGGAAGCTGTTCGACGGCAG
AACGGGCCGGACGTGAAGTAAGAAAATCCTGATTGGCTAAACATCCGCCA
AGTTTGTTTTTCTGATAAGTCATCCCTTGATGTGCTCGGTCGCTTTGACC
TCAATGGAGCTCGACGTGGGTTGCATGTGTCAGCTCAAGAGCTCGCGCGT
GTTCCTAATTGCCAGAGCCCTATGCCAAAGTCGCGTCACAAGACAGCAAA
CCGCGTTTCGTAAAAACCACAGCACATCCGAAACGCCCCTGTGCGATTCT
AGCGGTGGTAACGACAGTAGAGCTCTAGGAGATATTGTGCCGCTGGCGTG
TCTCGTTTGTGGGTAGATACTGAGCCGCTGCTAACAGGAGTGGGTGCAGG
TCCTTTGTTGCTTGGTTTTGTCTGTCTTTGAAAGCGCCGTACCTTCGCAA
CGACCACGATGAAATAACTCTTTTGTTGGCTGAAAGCCTTCGGGTTTGTG
GGAAGCGAGGAAGTGGGTATTCAGGCAAATCGCCATGAGGTATGACATGC
TGTAAGGGTGCCGTCGGGGTTGCCCTTCACAGACCACCAACACGGATATC
GATTACGTGTCCAGCGCACTCTGAGTTGCTGCCTCAGAGACAGGGGAACC
TCGTGCTCGCCGTTTTCGATTTGTTGTTATGTTTCGAAAATAGTCCGTAC
CACCGCTGTTATCGTTGTCGTTTTTGTCGTCAGGATCGCCTTCATGACGA
GCCACGTCATTGCCGACGAGAAGTATACGGGAGACTTCGCGCAAATATTT
GATGCTTATCGAGTCGGGGCTGGGAACGAAACCGTTCGCGCGGAGTGCAA
TGAACAGGTGCATGTATCGATTTGCCGAATGGCCTATAGATTCATAGCGT
GAGCGTTAAAATATTTTGGACGCAAGTCGATGGTGCTAAACCCATTGCAC
GGCAACACGCGTTGACGGGCACAGCGCTAGAGTTGCCGTTGGTTTTACGC
GCGCCGAGTTGGTTTTGGCGTCCAAACCTGGCGGGCTAAGCTGAAGTCAT
ACGTACATAGAAGATGGTGTACGGGTCGATCACCGTAAAGGTGAGGTGGA
ATTGAGTGCTCCTGTGCACCGTTGGTGCTACTACTCGTAGCGGGCGTGGT
GTTTTCTTCTTTTTCGACGGATTTTGCGCCAGACAGAACTTATCGATTTC
ACTCAAATACCGTGGCGTTTGATCGTTGCGCAATGGCGTCCCTACCGTGT
GGGGACATGCTCAGCGTTGCTGATGGAACCACTAGATACTCTGCTCCGCC
CTCTCTCGTATCTTAACGAGCGCACCTCGCGTCGCTGTCAACTCGTTGCC
GTGCAATGACGAGGAATTAGATCGCGGCAGCTGCGGCTGACAGAGTGTCG
AGTTTTTACTACTTCGATTGGAAAGGAGGCACGATGGACGATATAGACGG
GTACATCGATGACGAGCTGACGCCAGAGTTCGCGGCGGAGAAGTTTTGCG
AGTACGCTCTCATGGATCGTCGAGGCTCACTGGAGCTGAACAGG
back to top

Coding sequence (CDS) from alignment at D-herbacea_F_contig119:19791..22484+

>mRNA_D-herbacea_F_contig119.1316.1 ID=mRNA_D-herbacea_F_contig119.1316.1|Name=mRNA_D-herbacea_F_contig119.1316.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=840bp|location=Sequence derived from alignment at D-herbacea_F_contig119:19791..22484+ (Desmarestia herbacea DmunF female)
ATGACGCCGAGCTGGCCGGGGGAGGATCTGGAACCGTTGCGAGTTCAAGA
ATGACGCCGAGCTGGCCGGGGGAGGATCTGGAACCGTTGCGAGTTCAAGA
GTGGCTATACTACGAGAACCTGCTGCAGGGGACAGTGGAAGCTGTTCGAC
GGCAGAACGGGCCGGACGTGAAGTGGCTATACTACGAGAACCTGCTGCAG
GGGACAGTGGAAGCTGTTCGACGGCAGAACGGGCCGGACGTGAAGATCGC
CTTCATGACGAGCCACGTCATTGCCGACGAGAAGTATACGGGAGACTTCG
CGCAAATATTTGATGCTTATCGAGTCGGGGCTGGGAACGAAACCGTTCGC
GCGGAGTGCAATGAACAGGATCGCCTTCATGACGAGCCACGTCATTGCCG
ACGAGAAGTATACGGGAGACTTCGCGCAAATATTTGATGCTTATCGAGTC
GGGGCTGGGAACGAAACCGTTCGCGCGGAGTGCAATGAACAGATCGCGGC
AGCTGCGGCTGACAGAGTGTCGAGTTTTTACTACTTCGATTGGAAAGGAG
GCACGATGGACGATATAGACGGGTACATCGATGACGAGCTGACGCCAGAG
TTCGCGGCGGAGAAGTTTTGCGAGTACGCTCTCATGGATCGTCGAGGCTC
ACTGGAGCTGAACAGGATCGCGGCAGCTGCGGCTGACAGAGTGTCGAGTT
TTTACTACTTCGATTGGAAAGGAGGCACGATGGACGATATAGACGGGTAC
ATCGATGACGAGCTGACGCCAGAGTTCGCGGCGGAGAAGTTTTGCGAGTA
CGCTCTCATGGATCGTCGAGGCTCACTGGAGCTGAACAGG
back to top