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Homology
BLAST of mRNA_D-herbacea_F_contig119.1315.1 vs. uniprot
Match: D7FKK9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKK9_ECTSI) HSP 1 Score: 107 bits (266), Expect = 1.860e-27 Identity = 47/73 (64.38%), Postives = 59/73 (80.82%), Query Frame = 1
Query: 16 DVTYGQWWKDFLTSAEGNAWFDPWNIVIQAKLDELSAIAEAEED-KSNPFRVLMVGDSTMKHQFGAMCGFLGE 231
DV G WWK++L+ +GNAWFD WN +QAKLD L++IAE ED ++ PFRVLM+GDSTM HQFGA+CGF+GE
Sbjct: 29 DVVCGYWWKNYLSGEDGNAWFDSWNKFMQAKLDLLASIAEEREDTETEPFRVLMIGDSTMSHQFGAICGFMGE 101
BLAST of mRNA_D-herbacea_F_contig119.1315.1 vs. uniprot
Match: D7FJN9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJN9_ECTSI) HSP 1 Score: 107 bits (266), Expect = 5.260e-26 Identity = 47/73 (64.38%), Postives = 59/73 (80.82%), Query Frame = 1
Query: 16 DVTYGQWWKDFLTSAEGNAWFDPWNIVIQAKLDELSAIAEAEED-KSNPFRVLMVGDSTMKHQFGAMCGFLGE 231
DV G WWK++L+ +GNAWFD WN +QAKLD L++IAE ED ++ PFRVLM+GDSTM HQFGA+CGF+GE
Sbjct: 29 DVVCGYWWKNYLSGEDGNAWFDSWNKFMQAKLDLLASIAEEREDTETEPFRVLMIGDSTMSHQFGAICGFMGE 101
BLAST of mRNA_D-herbacea_F_contig119.1315.1 vs. uniprot
Match: A0A6H5JXH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXH8_9PHAE) HSP 1 Score: 68.6 bits (166), Expect = 9.570e-12 Identity = 34/80 (42.50%), Postives = 46/80 (57.50%), Query Frame = 1
Query: 28 GQWWKDFLTSAEG-NAWFDPWNIVIQAKLDELSAIAEAEED-----------KSNPFRVLMVGDSTMKHQFGAMCGFLGE 231
G WK+FL S G + WF WN ++Q ++D+L+A+AE E + PFRV M+GDSTM Q G +C FL E
Sbjct: 98 GAQWKNFLESGVGGDTWFTRWNAMVQPRIDKLAALAETERNWGDASSSGGRGTQQPFRVAMIGDSTMMQQHGVICAFLAE 177
BLAST of mRNA_D-herbacea_F_contig119.1315.1 vs. uniprot
Match: D7G0U4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0U4_ECTSI) HSP 1 Score: 68.6 bits (166), Expect = 1.020e-11 Identity = 35/80 (43.75%), Postives = 48/80 (60.00%), Query Frame = 1
Query: 28 GQWWKDFLTSA-EGNAWFDPWNIVIQAKLDELSAIAEAEEDKSN-----------PFRVLMVGDSTMKHQFGAMCGFLGE 231
G WK+FL+S G+ WF WN + Q ++D+++A+AEAE + + PFRV MVGDSTM Q G +C FL E
Sbjct: 176 GARWKNFLSSGVSGDTWFTRWNSMAQPRIDKVAALAEAERNGGDASXXXXXXTQQPFRVAMVGDSTMMQQHGVICAFLAE 255
BLAST of mRNA_D-herbacea_F_contig119.1315.1 vs. uniprot
Match: D7FJP2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJP2_ECTSI) HSP 1 Score: 61.2 bits (147), Expect = 1.530e-9 Identity = 28/45 (62.22%), Postives = 37/45 (82.22%), Query Frame = 1
Query: 103 AKLDELSAIAEAEED--KSNPFRVLMVGDSTMKHQFGAMCGFLGE 231
AKLD L+A+ E ++ + PFRVLMVGDSTM+HQ+GA+CGF+GE
Sbjct: 63 AKLDVLAALVENQQGGRREQPFRVLMVGDSTMRHQYGALCGFMGE 107
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-09_000580.3 |
| Exons | 2 |
| Model size | 239 |
| Cds size | 237 |
| Stop | 0 |
| Start | 0 |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622927575.2621965-CDS-D-herbacea_F_contig119:11346..11432 | 1622927575.2621965-CDS-D-herbacea_F_contig119:11346..11432 | Desmarestia herbacea DmunF female | CDS | D-herbacea_F_contig119 11347..11432 + |
| 1690790240.7228963-CDS-D-herbacea_F_contig119:11346..11432 | 1690790240.7228963-CDS-D-herbacea_F_contig119:11346..11432 | Desmarestia herbacea DmunF female | CDS | D-herbacea_F_contig119 11347..11432 + |
| 1622927575.2783463-CDS-D-herbacea_F_contig119:18460..18611 | 1622927575.2783463-CDS-D-herbacea_F_contig119:18460..18611 | Desmarestia herbacea DmunF female | CDS | D-herbacea_F_contig119 18461..18611 + |
| 1690790240.7317693-CDS-D-herbacea_F_contig119:18460..18611 | 1690790240.7317693-CDS-D-herbacea_F_contig119:18460..18611 | Desmarestia herbacea DmunF female | CDS | D-herbacea_F_contig119 18461..18611 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-herbacea_F_contig119.1315.1 >prot_D-herbacea_F_contig119.1315.1 ID=prot_D-herbacea_F_contig119.1315.1|Name=mRNA_D-herbacea_F_contig119.1315.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=79bp
VLSELDVTYGQWWKDFLTSAEGNAWFDPWNIVIQAKLDELSAIAEAEEDK SNPFRVLMVGDSTMKHQFGAMCGFLGENR back to topmRNA from alignment at D-herbacea_F_contig119:11347..18612+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_D-herbacea_F_contig119.1315.1 ID=mRNA_D-herbacea_F_contig119.1315.1|Name=mRNA_D-herbacea_F_contig119.1315.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=7266bp|location=Sequence derived from alignment at D-herbacea_F_contig119:11347..18612+ (Desmarestia herbacea DmunF female) GTCCTCTCAGAGCTGGATGTCACGTATGGACAATGGTGGAAGGATTTCCT
CACGTCCGCCGAAGGCAACGCCTGGTTCGACCCTTGGTGAGCATTCAAAC
CTATTGTACCGTATTGTGCAGAGGGCGGCGATGGAGACGGGGGTGGGGGG
GCATACTCATATATATATATACAAGGGCGCCTGCCGGGCGGTGAACTGCC
CGGCAGGCTCGCAGGATTTTAGGGCGCATGCCAAGGGTGTGAAAGGAAAT
CCGCAGGCAACGTGTCGATGGCGTAAACATCGTGCCTAAAGAGTTACACG
TACGTGCTTTCAACGTGCTTTCAACATTAGAGGCGAGACGAAACCCAAGC
AGGAGACATGACACTGATAATATTATAGATATAATCCCCAAATGGTAGGC
GTTTCTTGTATCTAAGCGCAGTTTGCCAATATTCTACGGTCTCCGATAGT
ACTACCGCAGCAGGACTACGATACTATAGTAGTACAGGAGTACAGTACGG
CCACATCACACAGTAGCATGATACGCTATAAATGATACCTGTAGAATAGT
ACAGGAGTAGTAATAGTAGTATAATAGTAGTACAGGAGTAGGACCTGGTG
TATGTAGTAGAAGTACCCGTGGTTTCAGAAAAAAAGACGACACCATGCGG
ATTCGAACTCAGGCTACAGGGAGTACAGAGCAAACTTATCCGCTTAATAA
TATATTGATTGTTGTTATTATTCGTTTTTTGTTTTTTCGCTTTGTTTTTT
GTTTTTCCCCCCGGTCAGTGTAGAGATGGTATAATAGTGGTACAGTGGTA
CAACAGTCATATGAGGAGGTTTCTCCGTTACCTCGCACTGCATCTATCTC
ACACCGTCTCTCTCTATGATAGCTCAGCACTCCTTGTGCCACCACTTTAT
TGCCAGCAGGCACTCTGCTGGTCACACTAGCCAGCCCTCCCTTCTTATGC
ATCCGCCCTTCCTTTCGTGTATAACATATTGTCTTTATCGTCGTTTATCT
GTTGCTATGAGGCTGTGTGATTGTTGCGGTCCAGCCGCAACCCTCACATT
GTAGCTACTGACTGTATTTCATGAAGAACCACTGCGAGTTACCGGTTGGT
ATATCATACGAACACAAAGGCATTGATTGCTGCAATCATCCACTTATCAC
ATCACGCAGGTGCATAGCTATGCAACTAGCAGGGATTCTGCCGGGCACAC
CAGCCAGGCCTCCCTTCTTATGCACCCACCCCAGCTAGGAGCGCACTCAT
GATACTACTACTACTACTGCCTGTTGTCTGTTGTTTGTTGTAGAGCCTGC
AAAATGAATACACGAACTCTGGCTCTTGTGGTAGACCCTTCGTACGATTT
TGCGTATCTTGGGGAAGAAAGAAGAGAAAACGCCCGAATCTCCGCGGCTC
TTCTTGGCGGGCATCGCGATGCCACCACGATGCCGCTTGTGTCCAGACGC
GATATAAAACACTCGCTGTAAGTACAGAATTTTGATTTGGTGCCCTGTCA
GCCATTTGGGACAATCGTATATAGGTGTATATATATATATATATATATAC
AAGACCCCCCTCCGGACATGGCTCATGAGAGAACAGTCACACGGGGTGAT
TCAAGAGAAAAAAAAGAAAAACTCGCAAAATCACACATTGCGTGTAGTGC
GCGGTTCGTGGGCGACAGAACGGAGTACTAGTAGTAGTAGTAGTGAATTT
GTTTTTGGGTGGAATAAGATATACATGCAATGTGTTGTCGATGGGCGGAT
CAGGCGGTTGAGGGAAAACCGCGTGCCGGCGGCAACAATTTCTTCTGTCG
TTAGTACAACAACAACAACAATAATTACTAATAGTTAGTTGTTTAGCGGC
CGCAAATTCGATGTATCATAGCCTGCGTAAGCTGTTAAGGGTCGTTTCTA
ACGGGCAACAAAAAGTCCACAATCAATCGCGACAAAAAAATATGACAAAA
CAAAAAGTCACGATCTAATTTATCATAGTTTTATTTTTCGGAGTTTGTGT
GGCGAGATTCGAAACAGCGACCTACACTATATTTCACGGCGTACATTTAA
CCATTCGTCTACCTTTAAGTGTAACATTAAGATGGCATTTATGTTCCATC
TAAGTGTTTACTGCGACACTCCCCGTTTCCCGGTGACAACATTCAACTCT
CTACAGCGCCAAAAATTAAATAAACACACTACAATCAAGTTGTTCTTTAT
TTTTTGACGACGGGGAGACGAATAATAATAGGACTTTTGGCAAAAAAAAT
AGTTTCCAAAAGTCACGAAACCGAACTTTTTGTCACGATTGATTGTGGAC
TTTTTTTCGCTCGTTAGAAACGACCCTAACTGTTTGTTGTTGTCGTTGGT
TGAGCCATTATCCGCAAATAAATACTCTTCTTGCGTGTAGTAATAAATAA
GGCGTGGCTGGTGGGGTGGGTCCCTTAATATACATACAAACTGAACACGT
TCGTTCATTGCCGAAACCATTTTATATGCGTGCTCACTGAATGAAGTAAG
GCCATTTCTTCTTATTATTATACAGTCCACACTTCGTCGTGGCAGTAGAC
TTAGCAATGTTGTACTTCGAAGTAGGACGGAACTTTACAGGAACTTTACA
TAGTTTTTTTCCTTGCTATTAGTATCGGTGTGTTCATTGTTGAGGTTCGG
GTTAGGGTTAGTGGTAGAATTTTCCGAAACTGTTGTGCAGCCCACGTTGG
TACTAAATCATATAATAAAACGAAAAAAGAAAGTTCTGTCCTACGTACAA
TGTTGTAAAGGCGGCTCCTTCGTGGATTGAAAAAGAAAGGCGATTTTCGA
TCCGAGACACAACAAATTGGCATTGTTATTACGGAGTACGAAGTATTATT
ATATTTTATTTAAAAATGCATCATCACCCATGACGTTCCAAACTGGTTTG
GGGGCCAGGAGATAATCAATCGTCAATCTCACTTTGCGATGATACTTCGG
TCGCGCGGATTCTATCGGTTCTCATCAGACATAAACTACAGCGTAGTAAC
TCCCCTGGGTTGGCCCATTATTAAACAACAGTAGTACAAAGTAGTAATAG
TAGTAGTAGGAATGAGGCTTTTCGGTCTCAATTTTTCGATTCTCCTTGCC
GATCGGACCACAGGAGGAGGAGGAAGAAGGATCGAAAAAGATGATTTATA
CTTCGAATAAGTATATTTATTTCCGTCACATTAGCCCGATCGCGCGGACC
CGTGGTCACAAAGGTAGGCGCCTCTTTTTATACCGTAATAACCGAGCCCT
CCGGCCCCTCTCCACAAACAACTCAATCTACCCCCATTTTCATAATATCA
TCATCCTCGACTTGGGAAATAACAGTGGCTACGAGAACAGGCAGACACAA
AAGCGAAATGGAATAAAACGAAAACATAAACGAGGCACAAATAAAACCAA
GACACTGGACAGGTATACTACGGATTTCAAAATACCCCCTCCACCGATTC
CATCTTGTCCGCGTCTGGGGGGAAAGCAAGGAAGGGCTAAGAAAACAGAG
AGCAATGATAAGAAGAAAACAGGTAAACACGAACAAAGAAAGACAATTAA
CAGGTAGGTACTACGCGTTTCACAAGGGGGCGGGTGCTCAGTGCGTCTTA
GGGGGCTGACGGCAACACAGCGACCGGTTCACGCGCGTGTCGTTCGCGTG
TCTCGCGGCTCTTCGCTGCTAACCAGTCAGCCATATACCTAGTGGCTCCC
TCTTCTACGGTAGAACGCCACCCCCCGCTACGAGCTGCCTCCATCCAGGA
TTTATCCTCTATAAATTTTATCCCAAAATCGCGAAGGCATTCCTTGACGC
AGTCCTGTAGTTGCCGCGGGGGTCTACCAGCCCTTCGCGCTCCCCCGACC
AGTTCCCCGCGCATGACGATGTTCGGAAGTCGGTAATCGCCCATGCACGC
GACGCGGCCCGCGTATAGCAGGGTGCGCTTCCTCACGGTGGCTTCGATGC
TCTCACAGCCGGTATTCACGAGGGCGTCGCGGTACGACAATTTTGGTGGA
AATCGGCGGTTGGTTGTGCCTATTAATATCTATGATATTTTCTATTTTCG
ATGTGAAAAAGAAGCAGATCGGGTTCATTCTTCGTGGATTGAAAAAGGGA
AAAGTTGTTGATACTAAACTGCTATTGTTATTGTTTGTTGTTGTGCTTGT
ACTACTACTGTCTGTACTACAGTTAGTTGTAGTACTGTCTGTATAAATAG
ATTTGTTCTTGTTTGTTGTTGCACTTACTTGTACCCTTGTACTACTACAG
TAACTGTCTGTACTACAACTAACTGTAGTACTACTGACTGTATGGACACA
TAATCTCTCATCGCAGCTCAAATCACACACCTACACATACACCCACACCA
AGCTCCACACAAAAACAATGCCGATGCTGGCTTGGCTGCTATCACTGCTG
CTGGTGCTGCTGCTCGCCGCATACCATCATCCTCTGATGGCAGCAGCGCG
CCGTACCGATGATCTATGATAGCTCTTGCCAAAAGCTGCATGATCTGGCT
GCTGCGTATATTCGGGGTCCCAAAAGCATCATGCAAGCCTGGCGATGATT
CTCAGTAGACACGCATCATCACCAAGCTCGTCGGATATGGCCCACGAAGG
TTATTGTAGCCCGCGAGGAGGAGGATTAGGAGGTATGTATGTGTGTGTGT
TGGTGCTTGTCAGGCGCTGCTGCCTCAGCTGCTGTCTCAGCACGCCAGGA
GCTGGGCTGTGTGTGTGTGTCATGTTGCGAAACGTTTTTTTGTTTTGTCA
TAGCAAAAAATAAAGCTGACATCGTTGCACGGCTGTTCATGTCAAACAGC
CCGAAGTGTGGTGACGTTTCACGACAGCAGACGGTTTTGACAGTTCGACA
GTCTGAAGAGCCCGGCACAGCGACCGACCTGAAAAACTGAATTTGTATAT
AGTCTTATATATATAAATTATATATATATATATTTCTTTTCCGTCCCATT
TATTATCTTCGCCCGATTCTTTCTCTAGCTCCATCTCTCTTCGTATCTCA
GATCCGGGGTCACATAGCAGGCGCTCCTCCCGCCTTCCCATATATGTGCT
TGGCTTATTCGTTTGACCATTGACCATGCATCCCTTTCGAGACGGAGCAC
CGTTCCTACTCCTGGTAGAGACACCTCCGAACTGTGCTCATGAATGCGCG
TGTGCAGCAGCAATAGTCGACCTCGCGACACCTTGCGATGTCGGGAGCTG
GGAAGGGTTCTCATGGCATCGCGTGCTGCGGTCGTCTATAATTGACCTCG
AGGTGATGCGGGGGCAGGGGCGAGGGTGCTGTGCCGGAGGTTTCGGCCGA
CGCAGGCTGCATTTTCCGCAATAGTGTACACCGCGGCCGCTGGTTATCAC
CGTCGCGTTGATGCTCCGAAAAAACTGTTTTTTTGTTTTTTTTTATCCTC
CGGCGGATGGACCGGAGGATAAAATTAAGGCGTTCGTTCCACATCATTTC
CACGGTCCAGCTTGTTTTTAAAGGTTTTCTCTTTTTGTTAAGCTCTCTTT
TGATTGGGTACCTCGGGGAACCAACTGTCGCGCGTTTTAGCAGGTGTGGT
TTGTGCCCCAGAGTCTTCGAGAAGAGCTTTGATCTCCGCAGGCGCTCTGA
AATAACGATGGGCGCACGCAGCGAGCACTCTCTCACCCGTGCATGATAGG
CGTTGACACGTTTTTGTTTTTGTCAAACCATTATCCTCCGGCGGATGGAC
AAAAATATAAAGCTTAAAGATCCACAAACGAATTCCGTGTACGGATTTTG
ATGGCCCCGTCGTGATCGACCATTGCCTTTTTAACCCTGATCAATCATGG
CATCATACAACACAACGATGCCATTACAGCGCGGGTACGTCAGAGGCAGG
CCGTTGCCCTTGGAGATAGGCACCCGAATTGGACGTGCTCTTCCTGCACT
CGTGACCGAACGGAGCGTGTTATCAACCATTTTTGCTCTTGGGCGTTCCA
GCATTGTTTCCTCTTAATAGGCTGTCTGGTTGGGGAGAGGCTTAACATCT
TCGTCCATCGACGTCTCACAGCCCACGGAATGTGCCACCTCACCCACCCT
CCCGTGCACCGCGTACAGCAATTTTATACCTCCATGCCGAAAGAGGTATC
TTCGTGCGGGCCGGACGGCCGGCGAGGGCAGGGGCAAGGGTTGGATTTTC
CTTGCTTCGAAGCACATTCAACGCCCCTCCGCAATTCGTCTTACTTCCAT
ATCTTAGATAAAAACCTTTTGCTTATCTGACCCTCTTCCTTGTTGCGCAT
TCTGTGGCCACCATCCAAAAGGGTGGCGTTGAACGAAACATGCAAGACAT
GATGGAACGAGGTCGGGCTTTTGTTGCCGCTTTTATGAATTGTCTTTCAA
AGTTGTAACCCTAGTGATACCGGCTGCATCTCTCATTTTTTTGCCTCTCC
GGGTATGGAGCGATTCGCTTCAATGCCAACATCGCTGTGTGCGCTTGTAC
GCGACAATGGTATTCAGAGTAGGGCCGCTCATTGAAGAAGAAAATCGTCC
ACCGCCATTTTTTTGTAGAGCTACGCAATGGTTGATCGCAGATGGCCGCG
GCAGTAGTAACGGCTACAGGCTACGAAAAAGTAAAGTCCTTGCTGTGTCG
TATTTGTGGTTCGGACGGTCCAGAACTTGACGGAGCCTCCTCAACCATTG
TTGTTTTTTGTAGGCCGGATCTTTGGGGTGTTCGTTTTTATTTGATGTAT
GATTTATGACATATGATTAGTAACAGCGTGGGCTGTGTGAGCAGTTCGAT
TCGGAAAATTCTACCACTACCACTACCCCTAACCCTTACCCTAACGAACA
TGCCTGTACTAATAGCTAGTCAAAACCTCTGTAAAGTTCCGTCCTACAAC
CATTGTTGCTAAAGCACGGCCAAATGCTCGGTACGTGAAAACGGCTGTCG
AGGGTCAAAGAGCAAGGGCGACTGCTTAACGCTCGGCGACACGCGTTTGT
TGGCTGCGATAGCGTCGATTGTCACGTGCAACATGCACCCGGATTCGGCG
ATTTTGGGGTTTCTGGCCCTTTGCAGCTGACCCTGAAAAACGCTGAAAAA
TGCGTAGAAACAGCGTGCTCTCTCTCCTGCGTGTTTATTTTGTTAAAACA
CTCTTGCTCCGTAGGAACATCGTGATTCAAGCAAAGCTGGACGAACTTTC
CGCGATCGCGGAAGCGGAGGAGGACAAGAGTAATCCCTTCCGTGTTTTGA
TGGTCGGAGACAGCACTATGAAGCATCAGTTCGGCGCTATGTGCGGATTC
CTGGGCGAGAATCGAG back to topCoding sequence (CDS) from alignment at D-herbacea_F_contig119:11347..18612+ >mRNA_D-herbacea_F_contig119.1315.1 ID=mRNA_D-herbacea_F_contig119.1315.1|Name=mRNA_D-herbacea_F_contig119.1315.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=474bp|location=Sequence derived from alignment at D-herbacea_F_contig119:11347..18612+ (Desmarestia herbacea DmunF female) GTCCTCTCAGAGCTGGATGTCACGTATGGACAATGGTGGAAGGATTTCCT CACGTCCGCCGAAGGCAACGCCTGGTTCGACCCTTGGTCCTCTCAGAGCT GGATGTCACGTATGGACAATGGTGGAAGGATTTCCTCACGTCCGCCGAAG GCAACGCCTGGTTCGACCCTTGGAACATCGTGATTCAAGCAAAGCTGGAC GAACTTTCCGCGATCGCGGAAGCGGAGGAGGACAAGAGTAATCCCTTCCG TGTTTTGATGGTCGGAGACAGCACTATGAAGCATCAGTTCGGCGCTATGT GCGGATTCCTGGGCGAGAATCGAGAACATCGTGATTCAAGCAAAGCTGGA CGAACTTTCCGCGATCGCGGAAGCGGAGGAGGACAAGAGTAATCCCTTCC GTGTTTTGATGGTCGGAGACAGCACTATGAAGCATCAGTTCGGCGCTATG TGCGGATTCCTGGGCGAGAATCGA back to top
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