mRNA_D-herbacea_F_contig1187.1313.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig1187.1313.1
Unique NamemRNA_D-herbacea_F_contig1187.1313.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
[Close]
BLAST of mRNA_D-herbacea_F_contig1187.1313.1 vs. uniprot
Match: A0A6H5JGV3_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGV3_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 2.350e-31
Identity = 69/102 (67.65%), Postives = 78/102 (76.47%), Query Frame = 1 
Query:    1 WHASDGTVAVQIDNPSCDVV-LPIGLVLGHLFTVSVVSPEQLHVNAVAKTPQTTAEISHAKTELEGPLSKAFSNTTLLPDQQATVLELCAKYRTVFALSMSE 303
            WHASDG+V VQI NPS D V L  GL LG L TV++  P+QLHVN+VA TP T  EI HAK+ELE PLSKAF NTTL  +QQ  VL+LCAKYR VF+LSMSE
Sbjct:   53 WHASDGSVVVQIANPSADGVRLYDGLCLGQLSTVTITEPDQLHVNSVANTPVTDDEIRHAKSELEEPLSKAFDNTTLTNEQQQAVLDLCAKYRPVFSLSMSE 154
[Close]
BLAST of mRNA_D-herbacea_F_contig1187.1313.1 vs. uniprot
Match: A0A6H5JXY7_9PHAE (RT_RNaseH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXY7_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 4.130e-31
Identity = 69/102 (67.65%), Postives = 78/102 (76.47%), Query Frame = 1 
Query:    1 WHASDGTVAVQIDNPSCDVV-LPIGLVLGHLFTVSVVSPEQLHVNAVAKTPQTTAEISHAKTELEGPLSKAFSNTTLLPDQQATVLELCAKYRTVFALSMSE 303
            WHASDG+V VQI NPS D V L  GL LG L TV++  P+QLHVN+VA TP T  EI HAK+ELE PLSKAF NTTL  +QQ  VL+LCAKYR VF+LSMSE
Sbjct:   54 WHASDGSVVVQIANPSADGVRLYDGLCLGQLSTVTITEPDQLHVNSVANTPVTDDEIRHAKSELEEPLSKAFDNTTLTNEQQQAVLDLCAKYRPVFSLSMSE 155
[Close]
BLAST of mRNA_D-herbacea_F_contig1187.1313.1 vs. uniprot
Match: A0A6H5K112_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K112_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 4.510e-31
Identity = 69/102 (67.65%), Postives = 78/102 (76.47%), Query Frame = 1 
Query:    1 WHASDGTVAVQIDNPSCDVV-LPIGLVLGHLFTVSVVSPEQLHVNAVAKTPQTTAEISHAKTELEGPLSKAFSNTTLLPDQQATVLELCAKYRTVFALSMSE 303
            WHASDG+V VQI NPS D V L  GL LG L TV++  P+QLHVN+VA TP T  EI HAK+ELE PLSKAF NTTL  +QQ  VL+LCAKYR VF+LSMSE
Sbjct:   53 WHASDGSVVVQIANPSADGVRLYDGLCLGQLSTVTITEPDQLHVNSVANTPVTDDEIRHAKSELEEPLSKAFDNTTLTNEQQQAVLDLCAKYRPVFSLSMSE 154
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig1187.1313.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JGV3_9PHAE2.350e-3167.65Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JXY7_9PHAE4.130e-3167.65RT_RNaseH domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K112_9PHAE4.510e-3167.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig1187contigD-herbacea_F_contig1187:6420..6994 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size576
Cds size375
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927574.6476645-CDS-D-herbacea_F_contig1187:6419..67941622927574.6476645-CDS-D-herbacea_F_contig1187:6419..6794Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1187 6420..6794 +
1690790240.4816837-CDS-D-herbacea_F_contig1187:6419..67941690790240.4816837-CDS-D-herbacea_F_contig1187:6419..6794Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1187 6420..6794 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927574.6608393-UTR-D-herbacea_F_contig1187:6794..69941622927574.6608393-UTR-D-herbacea_F_contig1187:6794..6994Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig1187 6795..6994 +
1690790240.4918265-UTR-D-herbacea_F_contig1187:6794..69941690790240.4918265-UTR-D-herbacea_F_contig1187:6794..6994Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig1187 6795..6994 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig1187.1313.1prot_D-herbacea_F_contig1187.1313.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig1187 6420..6794 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig1187.1313.1

>prot_D-herbacea_F_contig1187.1313.1 ID=prot_D-herbacea_F_contig1187.1313.1|Name=mRNA_D-herbacea_F_contig1187.1313.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=125bp
WHASDGTVAVQIDNPSCDVVLPIGLVLGHLFTVSVVSPEQLHVNAVAKTP
QTTAEISHAKTELEGPLSKAFSNTTLLPDQQATVLELCAKYRTVFALSMS
EFVNVILRKFYGTSSPWSNQCFFC*
back to top

mRNA from alignment at D-herbacea_F_contig1187:6420..6994+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig1187.1313.1 ID=mRNA_D-herbacea_F_contig1187.1313.1|Name=mRNA_D-herbacea_F_contig1187.1313.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=575bp|location=Sequence derived from alignment at D-herbacea_F_contig1187:6420..6994+ (Desmarestia herbacea DmunF female)
TGGCATGCCTCTGATGGAACTGTCGCAGTACAAATTGATAATCCCTCATG
CGATGTTGTTTTGCCAATTGGTTTAGTTCTTGGTCATTTATTTACGGTAT
CAGTTGTCTCACCTGAACAACTCCATGTCAACGCAGTTGCGAAAACACCG
CAGACAACAGCTGAAATTAGCCATGCAAAAACAGAGCTTGAAGGTCCTTT
GTCAAAAGCATTTTCTAATACTACGCTATTACCTGACCAACAAGCCACTG
TATTAGAACTGTGTGCAAAATACAGGACTGTTTTTGCATTGTCCATGAGT
GAATTTGTCAATGTTATATTGAGAAAATTCTACGGCACTAGTAGTCCATG
GAGTAACCAATGTTTTTTTTGTTGAGAAAAATAACGGTTCTCAATGTTTT
TTGTGTCGATTATTGTGACACTCTCAATAAATGCCACATTGTCCGGAAGA
GCCGCCCATTTGCCCAATTTGTATACATATCTCGACAATGTCCGTGGAGC
CAAGTTTGTTTCCGTCGCAGATATCTTTTTGGCGCTTCCTAGAACCTCCG
GTGGCAGAAGAAGGGCACATCGTTC
back to top

Coding sequence (CDS) from alignment at D-herbacea_F_contig1187:6420..6994+

>mRNA_D-herbacea_F_contig1187.1313.1 ID=mRNA_D-herbacea_F_contig1187.1313.1|Name=mRNA_D-herbacea_F_contig1187.1313.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=750bp|location=Sequence derived from alignment at D-herbacea_F_contig1187:6420..6994+ (Desmarestia herbacea DmunF female)
TGGCATGCCTCTGATGGAACTGTCGCAGTACAAATTGATAATCCCTCATG
CGATGTTGTTTTGCCAATTGGTTTAGTTCTTGGTCATTTATTTACGGTAT
CAGTTGTCTCACCTGAACAACTCCATGTCAACGCAGTTGCGAAAACACCG
CAGACAACAGCTGAAATTAGCCATGCAAAAACAGAGCTTGAAGGTCCTTT
GTCAAAAGCATTTTCTAATACTACGCTATTACCTGACCAACAAGCCACTG
TATTAGAACTGTGTGCAAAATACAGGACTGTTTTTGCATTGTCCATGAGT
GAATTTGTCAATGTTATATTGAGAAAATTCTACGGCACTAGTAGTCCATG
GAGTAACCAATGTTTTTTTTGTTGATGGCATGCCTCTGATGGAACTGTCG
CAGTACAAATTGATAATCCCTCATGCGATGTTGTTTTGCCAATTGGTTTA
GTTCTTGGTCATTTATTTACGGTATCAGTTGTCTCACCTGAACAACTCCA
TGTCAACGCAGTTGCGAAAACACCGCAGACAACAGCTGAAATTAGCCATG
CAAAAACAGAGCTTGAAGGTCCTTTGTCAAAAGCATTTTCTAATACTACG
CTATTACCTGACCAACAAGCCACTGTATTAGAACTGTGTGCAAAATACAG
GACTGTTTTTGCATTGTCCATGAGTGAATTTGTCAATGTTATATTGAGAA
AATTCTACGGCACTAGTAGTCCATGGAGTAACCAATGTTTTTTTTGTTGA
back to top