mRNA_D-herbacea_F_contig1187.1312.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig1187.1312.1
Unique NamemRNA_D-herbacea_F_contig1187.1312.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig1187.1312.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig1187contigD-herbacea_F_contig1187:4130..4632 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size503
Cds size318
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig1187.1312.1prot_D-herbacea_F_contig1187.1312.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig1187 4132..4449 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927574.5762584-UTR-D-herbacea_F_contig1187:4129..41311622927574.5762584-UTR-D-herbacea_F_contig1187:4129..4131Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig1187 4130..4131 +
1690790240.4525027-UTR-D-herbacea_F_contig1187:4129..41311690790240.4525027-UTR-D-herbacea_F_contig1187:4129..4131Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig1187 4130..4131 +
1622927574.5972683-UTR-D-herbacea_F_contig1187:4449..46321622927574.5972683-UTR-D-herbacea_F_contig1187:4449..4632Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig1187 4450..4632 +
1690790240.4720643-UTR-D-herbacea_F_contig1187:4449..46321690790240.4720643-UTR-D-herbacea_F_contig1187:4449..4632Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig1187 4450..4632 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927574.5867848-CDS-D-herbacea_F_contig1187:4131..44491622927574.5867848-CDS-D-herbacea_F_contig1187:4131..4449Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1187 4132..4449 +
1690790240.4619467-CDS-D-herbacea_F_contig1187:4131..44491690790240.4619467-CDS-D-herbacea_F_contig1187:4131..4449Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1187 4132..4449 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig1187.1312.1

>prot_D-herbacea_F_contig1187.1312.1 ID=prot_D-herbacea_F_contig1187.1312.1|Name=mRNA_D-herbacea_F_contig1187.1312.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=106bp
MASDTVVSLVSLLAWYFYYMIYRSQLHPLFPRDCLPQPSRTRSSAHCSVS
LKQQLVLSRVAPVCLHVVLSCRLIFVQVSTQMKSSGPISRIATRTIFVGV
LLGCT*
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mRNA from alignment at D-herbacea_F_contig1187:4130..4632+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig1187.1312.1 ID=mRNA_D-herbacea_F_contig1187.1312.1|Name=mRNA_D-herbacea_F_contig1187.1312.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=503bp|location=Sequence derived from alignment at D-herbacea_F_contig1187:4130..4632+ (Desmarestia herbacea DmunF female)
GCATGGCAAGTGATACTGTAGTCTCTCTGGTGAGTCTTCTAGCGTGGTAT
TTCTACTACATGATCTATAGATCGCAGTTGCACCCGCTATTTCCCAGAGA
CTGTTTGCCGCAGCCTTCTCGTACGCGTTCTTCTGCTCACTGCTCCGTGT
CGTTGAAGCAGCAATTGGTGCTGTCAAGGGTCGCACCTGTTTGTCTTCAC
GTCGTTTTGTCATGTCGCTTGATTTTTGTCCAAGTCTCAACTCAAATGAA
GAGCTCTGGCCCTATTTCCCGAATAGCTACCCGTACCATTTTTGTTGGGG
TCCTCTTGGGTTGCACCTGACTCTATTGTCCAACCTGCCCGGTTGTAAAA
TGCTGGTTCATTCTGTCTACAGTCGCACTGTCAACTGCCAAGGTATGGGT
TGTTTCGTGACTGTTGTGTCTAAATCTATTATTGCTCTTTGTCAAAGCAC
GTCTATTATTGTCTGTTGTCTGAGTTCAGAGCAATCATGAGTTGTGAGAC
GAC
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Coding sequence (CDS) from alignment at D-herbacea_F_contig1187:4130..4632+

>mRNA_D-herbacea_F_contig1187.1312.1 ID=mRNA_D-herbacea_F_contig1187.1312.1|Name=mRNA_D-herbacea_F_contig1187.1312.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=636bp|location=Sequence derived from alignment at D-herbacea_F_contig1187:4130..4632+ (Desmarestia herbacea DmunF female)
ATGGCAAGTGATACTGTAGTCTCTCTGGTGAGTCTTCTAGCGTGGTATTT
CTACTACATGATCTATAGATCGCAGTTGCACCCGCTATTTCCCAGAGACT
GTTTGCCGCAGCCTTCTCGTACGCGTTCTTCTGCTCACTGCTCCGTGTCG
TTGAAGCAGCAATTGGTGCTGTCAAGGGTCGCACCTGTTTGTCTTCACGT
CGTTTTGTCATGTCGCTTGATTTTTGTCCAAGTCTCAACTCAAATGAAGA
GCTCTGGCCCTATTTCCCGAATAGCTACCCGTACCATTTTTGTTGGGGTC
CTCTTGGGTTGCACCTGAATGGCAAGTGATACTGTAGTCTCTCTGGTGAG
TCTTCTAGCGTGGTATTTCTACTACATGATCTATAGATCGCAGTTGCACC
CGCTATTTCCCAGAGACTGTTTGCCGCAGCCTTCTCGTACGCGTTCTTCT
GCTCACTGCTCCGTGTCGTTGAAGCAGCAATTGGTGCTGTCAAGGGTCGC
ACCTGTTTGTCTTCACGTCGTTTTGTCATGTCGCTTGATTTTTGTCCAAG
TCTCAACTCAAATGAAGAGCTCTGGCCCTATTTCCCGAATAGCTACCCGT
ACCATTTTTGTTGGGGTCCTCTTGGGTTGCACCTGA
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