mRNA_D-herbacea_F_contig1184.1310.1 (mRNA) Desmarestia herbacea DmunF female
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Overview
Homology
BLAST of mRNA_D-herbacea_F_contig1184.1310.1 vs. uniprot
Match: A0A6H5JUB2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUB2_9PHAE) HSP 1 Score: 101 bits (252), Expect = 3.680e-21 Identity = 62/186 (33.33%), Postives = 97/186 (52.15%), Query Frame = 1
Query: 106 CIFEGNAATNGGGLHSTAENEMIYHSSXXXXXXXXXXXAIYHMGF-VTLQNVSFVDNRASDDGMAVTSIGELDETSNATFTGNTFYCPTDEYSVETNGNSDANSCRFQLVCTECSTGCDNIPYGLSLLGDSSGGIPACETLPSGVVHPPNGGATIETLKLEKGYYRTSKMSSNILECQQRGVCLGG 660
C+FE N+A +GG ST + A H G V+L + +FV NRA G+AV+S+G ++ ++ TF NT+YC + +Y + + + + + RF VCT C+ IP + + ++ +P CET+ G N GAT+ L+L+ YYRTS S +L+C Q C+GG
Sbjct: 217 CVFERNSAEDGGKEPSTRSS-------------VGSGGAYLHSGLLVSLADTTFVGNRAGAAGLAVSSLGIIENLTDTTFESNTYYCQSGQYDIGADEDEVSGTYRFDEVCTCCAVSNAEIPESMVVANNAF--VPICETIMKGASG--NAGATVAALELDPDYYRTSADSREVLQCHQEEACMGG 385
BLAST of mRNA_D-herbacea_F_contig1184.1310.1 vs. uniprot
Match: D7FTL7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTL7_ECTSI) HSP 1 Score: 84.3 bits (207), Expect = 3.860e-15 Identity = 55/191 (28.80%), Postives = 95/191 (49.74%), Query Frame = 1
Query: 97 FVGCIFEGNAATNGGGLHSTAENEMIYHSSXXXXXXXXXXXAIYHMGFVTLQNVSFVDNRASD-DGMAVTSIGELDETSNATFTGNTFYCPTDEYSVETNGNSDANSCRFQLVCTECSTGCDNIPYGLSLLGDSSGGIPACETLPSGVVHPPN--GGATIETLKLEKGYYRTSKMSSNILECQQRGVCLGG 660
F C F GN A+ GG +A + + + A+ G +++N SFVDN + D +G A+++IG + + ++ F+ N F CP+ + ++ N + D F+ VC C CD + L+G PAC + + H + G T++ + +++GY+R + +S +LEC Q CLGG
Sbjct: 623 FDRCSFVGNQASATGGAFESAAGQDAFVGNVFVGNKAGTGGALRMAGTASVENCSFVDNVSDDGEGAALSNIGFISKMAHIYFSDNVFDCPSGTF-LDLNASGDP----FEAVCAGCDIVCDGCVFEQGLVG------PACSEV---MAHSTSTGGNTTLQEVSIDRGYWRATSVSEEVLECFQADACLGG 799
BLAST of mRNA_D-herbacea_F_contig1184.1310.1 vs. uniprot
Match: D8LIY0_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIY0_ECTSI) HSP 1 Score: 79.7 bits (195), Expect = 1.500e-13 Identity = 66/220 (30.00%), Postives = 93/220 (42.27%), Query Frame = 1
Query: 25 SNEALTGGGVSILDGGSFT-------ENEMFFVGCIFEGNAATNGGGLHSTAENEMIYHSSXXXXXXXXXXXAIYHMGFVTLQNVSFVDNRASDDG-MAVTSIGELDETSNATFTGNTFYCPTDEYSVETNGNSDANSCRFQLVCTECSTGCDNIPYGLSLLGDSSGGIPACETLPSGVVHPPNGGATIETLKLEKGYYRTSKMSSNILECQQRGVCLGG 660
SN A GG V+ G N F C F GN AT GG TA + + A+ G ++ N SFV+N ++D G AV++IG + F+GN F CPT + + N + D F+ VC C T + LL +P C L P +G T+E L +++GY+R + S +L C CLGG
Sbjct: 785 SNSAQIGGAVATFGSGGSKGVEDIEPPNPTTFDRCRFVGNRATATGGAIDTAAGYDFFVDTTFEDNAAGTGGALRLAGTASIINCSFVENYSNDGGGAAVSNIGIVSSAEKINFSGNGFDCPTGMF-LAYNESDDL----FETVCDGCQTXXXXXAFAEPLL------VPMCRDLLEHSTSP-DGKLTLEALSIQRGYWRATTTSEEVLACYHPEACLGG 992
BLAST of mRNA_D-herbacea_F_contig1184.1310.1 vs. uniprot
Match: A0A6H5K0E9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K0E9_9PHAE) HSP 1 Score: 79.0 bits (193), Expect = 2.790e-13 Identity = 59/206 (28.64%), Postives = 93/206 (45.15%), Query Frame = 1
Query: 52 VSILDGGSFTENEM--FFVGCIFEGNAATNGGGLHSTAENEMIYHSSXXXXXXXXXXXAIYHMGFVTLQNVSFVDNRASD-DGMAVTSIGELDETSNATFTGNTFYCPTDEYSVETNGNSDANSCRFQLVCTECSTGCDNIPYGLSLLGDSSGGIPACETLPSGVVHPPNGGATIETLKLEKGYYRTSKMSSNILECQQRGVCLGG 660
+SI G+ ++ F C F GN A + GG ++A E +S A+ G + N SF +N + + +G AV++IG + +NA+F GN F CP + T G+ D F+ +C C T CD + L P C + G T++TL +++G++R S S+ +L C CLGG
Sbjct: 889 ISIFGSGTDESGDLPTTFDTCQFIGNQAISTGGAINSAAGEDAIENSVFEGNSAGTGGALRLAGEAYISNCSFRENTSDEGEGAAVSNIGFISSITNASFDGNGFDCPAGTFRNVT-GSVD----HFEAICNGCETTCDGCVFAEGSLA------PICTEVMDHSTSD-GGNVTLQTLSIDRGFWRASTSSTEVLACYHADACLGG 1082
BLAST of mRNA_D-herbacea_F_contig1184.1310.1 vs. uniprot
Match: A0A6H5JMC1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMC1_9PHAE) HSP 1 Score: 72.0 bits (175), Expect = 6.350e-11 Identity = 62/208 (29.81%), Postives = 93/208 (44.71%), Query Frame = 1
Query: 40 TGGGVSILDGGSFTENEMFFVGCIFEGNAAT-NGGGLHSTAENEMIYHSSXXXXXXXXXXXAIYHMGFVTLQNVSFVDNRASDDGMAVTSIGELDETSNATFTGNTFYCPTDEYSVETNGNSDANSCRFQLVCTECSTGCDNIPYGLSLLGDSSGGIPACETLPSGVVHPPNGGATIETLKLEKGYYRTSKMSSNILECQQRGVCLGG 660
TG G +IL G E + + GC F GN AT +GG + S A +++ +S+ XXX G A+ ++G +D TF N CP+ + +G+ +N C C EC+ CD + D+S +P C P H + G+T+ETL +++GY+R + S NIL C CLGG
Sbjct: 545 TGSGTTILATGE--EFPVTYTGCNFTGNWATASGGAMESAAGKDLVVNSTFLGNTASQXXXXXXXXXXXXXXXXXXXXXADEQGGPAIHNLGFMDGIEACTFADNDVVCPSGFFLDFVDGDRYSNVCSG---CEECND-CD--------VADNSE-VPTCTITPD---HAQSTGSTVETLSIDRGYWRATPSSRNILACHNADACLGG 734
BLAST of mRNA_D-herbacea_F_contig1184.1310.1 vs. uniprot
Match: D7FTT9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTT9_ECTSI) HSP 1 Score: 67.0 bits (162), Expect = 3.400e-9 Identity = 40/109 (36.70%), Postives = 60/109 (55.05%), Query Frame = 1
Query: 349 NTFYCPTDEYSVETNGNSD----ANSCRFQLVCTECSTGCDNIPYGLSLLGDSSGGIPACETLPSGVVHPPNGGATIETLKLEKGYYRTSKMSSNILECQQRGVCLGGT 663
N FYC E+ ET + D A+ CRF VC+ C++ CD+ + L D+ +P CE P G GAT+ TL++ G+YR+S+ S++I EC + C GG+
Sbjct: 514 NDFYCEEGEFGTETLIDKDLFGGADQCRFGRVCSRCASECDSELESAAELVDAET-LPTCEEAPEGS-RTTRRGATLATLEILPGFYRSSETSTDIRECFHKQACEGGS 620
BLAST of mRNA_D-herbacea_F_contig1184.1310.1 vs. uniprot
Match: A0A6H5L324_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L324_9PHAE) HSP 1 Score: 66.2 bits (160), Expect = 6.200e-9 Identity = 40/109 (36.70%), Postives = 61/109 (55.96%), Query Frame = 1
Query: 349 NTFYCPTDEYSVETNGNSD----ANSCRFQLVCTECSTGCDNIPYGLSLLGDSSGGIPACETLPSGVVHPPNGGATIETLKLEKGYYRTSKMSSNILECQQRGVCLGGT 663
N FYC E+ ET + D A+ CRF+ VC+ C++ C + + L D+ +P CET P G GAT+ TL++ G+YR+S+ S++I EC + C GG+
Sbjct: 490 NDFYCEEGEFGTETLIDKDLFGGADQCRFRRVCSRCASECGSELERTAELVDADT-LPTCETAPEGS-RTTRRGATLATLEVLPGFYRSSETSTDIRECFHKKACDGGS 596 The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig1184.1310.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-herbacea_F_contig1184.1310.1 >prot_D-herbacea_F_contig1184.1310.1 ID=prot_D-herbacea_F_contig1184.1310.1|Name=mRNA_D-herbacea_F_contig1184.1310.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=224bp MREATLSSNEALTGGGVSILDGGSFTENEMFFVGCIFEGNAATNGGGLHSback to top mRNA from alignment at D-herbacea_F_contig1184:30598..31952- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-herbacea_F_contig1184.1310.1 ID=mRNA_D-herbacea_F_contig1184.1310.1|Name=mRNA_D-herbacea_F_contig1184.1310.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=1355bp|location=Sequence derived from alignment at D-herbacea_F_contig1184:30598..31952- (Desmarestia herbacea DmunF female)back to top Coding sequence (CDS) from alignment at D-herbacea_F_contig1184:30598..31952- >mRNA_D-herbacea_F_contig1184.1310.1 ID=mRNA_D-herbacea_F_contig1184.1310.1|Name=mRNA_D-herbacea_F_contig1184.1310.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=1344bp|location=Sequence derived from alignment at D-herbacea_F_contig1184:30598..31952- (Desmarestia herbacea DmunF female)back to top |