mRNA_D-herbacea_F_contig1184.1310.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig1184.1310.1
Unique NamemRNA_D-herbacea_F_contig1184.1310.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
BLAST of mRNA_D-herbacea_F_contig1184.1310.1 vs. uniprot
Match: A0A6H5JUB2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUB2_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 3.680e-21
Identity = 62/186 (33.33%), Postives = 97/186 (52.15%), Query Frame = 1
Query:  106 CIFEGNAATNGGGLHSTAENEMIYHSSXXXXXXXXXXXAIYHMGF-VTLQNVSFVDNRASDDGMAVTSIGELDETSNATFTGNTFYCPTDEYSVETNGNSDANSCRFQLVCTECSTGCDNIPYGLSLLGDSSGGIPACETLPSGVVHPPNGGATIETLKLEKGYYRTSKMSSNILECQQRGVCLGG 660
            C+FE N+A +GG   ST  +                  A  H G  V+L + +FV NRA   G+AV+S+G ++  ++ TF  NT+YC + +Y +  + +  + + RF  VCT C+     IP  + +  ++   +P CET+  G     N GAT+  L+L+  YYRTS  S  +L+C Q   C+GG
Sbjct:  217 CVFERNSAEDGGKEPSTRSS-------------VGSGGAYLHSGLLVSLADTTFVGNRAGAAGLAVSSLGIIENLTDTTFESNTYYCQSGQYDIGADEDEVSGTYRFDEVCTCCAVSNAEIPESMVVANNAF--VPICETIMKGASG--NAGATVAALELDPDYYRTSADSREVLQCHQEEACMGG 385          
BLAST of mRNA_D-herbacea_F_contig1184.1310.1 vs. uniprot
Match: D7FTL7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTL7_ECTSI)

HSP 1 Score: 84.3 bits (207), Expect = 3.860e-15
Identity = 55/191 (28.80%), Postives = 95/191 (49.74%), Query Frame = 1
Query:   97 FVGCIFEGNAATNGGGLHSTAENEMIYHSSXXXXXXXXXXXAIYHMGFVTLQNVSFVDNRASD-DGMAVTSIGELDETSNATFTGNTFYCPTDEYSVETNGNSDANSCRFQLVCTECSTGCDNIPYGLSLLGDSSGGIPACETLPSGVVHPPN--GGATIETLKLEKGYYRTSKMSSNILECQQRGVCLGG 660
            F  C F GN A+  GG   +A  +  +  +           A+   G  +++N SFVDN + D +G A+++IG + + ++  F+ N F CP+  + ++ N + D     F+ VC  C   CD   +   L+G      PAC  +   + H  +  G  T++ + +++GY+R + +S  +LEC Q   CLGG
Sbjct:  623 FDRCSFVGNQASATGGAFESAAGQDAFVGNVFVGNKAGTGGALRMAGTASVENCSFVDNVSDDGEGAALSNIGFISKMAHIYFSDNVFDCPSGTF-LDLNASGDP----FEAVCAGCDIVCDGCVFEQGLVG------PACSEV---MAHSTSTGGNTTLQEVSIDRGYWRATSVSEEVLECFQADACLGG 799          
BLAST of mRNA_D-herbacea_F_contig1184.1310.1 vs. uniprot
Match: D8LIY0_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIY0_ECTSI)

HSP 1 Score: 79.7 bits (195), Expect = 1.500e-13
Identity = 66/220 (30.00%), Postives = 93/220 (42.27%), Query Frame = 1
Query:   25 SNEALTGGGVSILDGGSFT-------ENEMFFVGCIFEGNAATNGGGLHSTAENEMIYHSSXXXXXXXXXXXAIYHMGFVTLQNVSFVDNRASDDG-MAVTSIGELDETSNATFTGNTFYCPTDEYSVETNGNSDANSCRFQLVCTECSTGCDNIPYGLSLLGDSSGGIPACETLPSGVVHPPNGGATIETLKLEKGYYRTSKMSSNILECQQRGVCLGG 660
            SN A  GG V+    G           N   F  C F GN AT  GG   TA     +  +           A+   G  ++ N SFV+N ++D G  AV++IG +       F+GN F CPT  + +  N + D     F+ VC  C T      +   LL      +P C  L      P +G  T+E L +++GY+R +  S  +L C     CLGG
Sbjct:  785 SNSAQIGGAVATFGSGGSKGVEDIEPPNPTTFDRCRFVGNRATATGGAIDTAAGYDFFVDTTFEDNAAGTGGALRLAGTASIINCSFVENYSNDGGGAAVSNIGIVSSAEKINFSGNGFDCPTGMF-LAYNESDDL----FETVCDGCQTXXXXXAFAEPLL------VPMCRDLLEHSTSP-DGKLTLEALSIQRGYWRATTTSEEVLACYHPEACLGG 992          
BLAST of mRNA_D-herbacea_F_contig1184.1310.1 vs. uniprot
Match: A0A6H5K0E9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K0E9_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 2.790e-13
Identity = 59/206 (28.64%), Postives = 93/206 (45.15%), Query Frame = 1
Query:   52 VSILDGGSFTENEM--FFVGCIFEGNAATNGGGLHSTAENEMIYHSSXXXXXXXXXXXAIYHMGFVTLQNVSFVDNRASD-DGMAVTSIGELDETSNATFTGNTFYCPTDEYSVETNGNSDANSCRFQLVCTECSTGCDNIPYGLSLLGDSSGGIPACETLPSGVVHPPNGGATIETLKLEKGYYRTSKMSSNILECQQRGVCLGG 660
            +SI   G+    ++   F  C F GN A + GG  ++A  E    +S           A+   G   + N SF +N + + +G AV++IG +   +NA+F GN F CP   +   T G+ D     F+ +C  C T CD   +    L       P C  +         G  T++TL +++G++R S  S+ +L C     CLGG
Sbjct:  889 ISIFGSGTDESGDLPTTFDTCQFIGNQAISTGGAINSAAGEDAIENSVFEGNSAGTGGALRLAGEAYISNCSFRENTSDEGEGAAVSNIGFISSITNASFDGNGFDCPAGTFRNVT-GSVD----HFEAICNGCETTCDGCVFAEGSLA------PICTEVMDHSTSD-GGNVTLQTLSIDRGFWRASTSSTEVLACYHADACLGG 1082          
BLAST of mRNA_D-herbacea_F_contig1184.1310.1 vs. uniprot
Match: A0A6H5JMC1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMC1_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 6.350e-11
Identity = 62/208 (29.81%), Postives = 93/208 (44.71%), Query Frame = 1
Query:   40 TGGGVSILDGGSFTENEMFFVGCIFEGNAAT-NGGGLHSTAENEMIYHSSXXXXXXXXXXXAIYHMGFVTLQNVSFVDNRASDDGMAVTSIGELDETSNATFTGNTFYCPTDEYSVETNGNSDANSCRFQLVCTECSTGCDNIPYGLSLLGDSSGGIPACETLPSGVVHPPNGGATIETLKLEKGYYRTSKMSSNILECQQRGVCLGG 660
            TG G +IL  G   E  + + GC F GN AT +GG + S A  +++ +S+        XXX                       G A+ ++G +D     TF  N   CP+  +    +G+  +N C     C EC+  CD        + D+S  +P C   P    H  + G+T+ETL +++GY+R +  S NIL C     CLGG
Sbjct:  545 TGSGTTILATGE--EFPVTYTGCNFTGNWATASGGAMESAAGKDLVVNSTFLGNTASQXXXXXXXXXXXXXXXXXXXXXADEQGGPAIHNLGFMDGIEACTFADNDVVCPSGFFLDFVDGDRYSNVCSG---CEECND-CD--------VADNSE-VPTCTITPD---HAQSTGSTVETLSIDRGYWRATPSSRNILACHNADACLGG 734          
BLAST of mRNA_D-herbacea_F_contig1184.1310.1 vs. uniprot
Match: D7FTT9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTT9_ECTSI)

HSP 1 Score: 67.0 bits (162), Expect = 3.400e-9
Identity = 40/109 (36.70%), Postives = 60/109 (55.05%), Query Frame = 1
Query:  349 NTFYCPTDEYSVETNGNSD----ANSCRFQLVCTECSTGCDNIPYGLSLLGDSSGGIPACETLPSGVVHPPNGGATIETLKLEKGYYRTSKMSSNILECQQRGVCLGGT 663
            N FYC   E+  ET  + D    A+ CRF  VC+ C++ CD+     + L D+   +P CE  P G       GAT+ TL++  G+YR+S+ S++I EC  +  C GG+
Sbjct:  514 NDFYCEEGEFGTETLIDKDLFGGADQCRFGRVCSRCASECDSELESAAELVDAET-LPTCEEAPEGS-RTTRRGATLATLEILPGFYRSSETSTDIRECFHKQACEGGS 620          
BLAST of mRNA_D-herbacea_F_contig1184.1310.1 vs. uniprot
Match: A0A6H5L324_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L324_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 6.200e-9
Identity = 40/109 (36.70%), Postives = 61/109 (55.96%), Query Frame = 1
Query:  349 NTFYCPTDEYSVETNGNSD----ANSCRFQLVCTECSTGCDNIPYGLSLLGDSSGGIPACETLPSGVVHPPNGGATIETLKLEKGYYRTSKMSSNILECQQRGVCLGGT 663
            N FYC   E+  ET  + D    A+ CRF+ VC+ C++ C +     + L D+   +P CET P G       GAT+ TL++  G+YR+S+ S++I EC  +  C GG+
Sbjct:  490 NDFYCEEGEFGTETLIDKDLFGGADQCRFRRVCSRCASECGSELERTAELVDADT-LPTCETAPEGS-RTTRRGATLATLEVLPGFYRSSETSTDIRECFHKKACDGGS 596          
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig1184.1310.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5JUB2_9PHAE3.680e-2133.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTL7_ECTSI3.860e-1528.80Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D8LIY0_ECTSI1.500e-1330.00Polymorphic Outer membrane protein G/I family n=1 ... [more]
A0A6H5K0E9_9PHAE2.790e-1328.64Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JMC1_9PHAE6.350e-1129.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTT9_ECTSI3.400e-936.70Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L324_9PHAE6.200e-936.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig1184contigD-herbacea_F_contig1184:30598..31952 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score88.6
Seed ortholog evalue4.1e-15
Seed eggNOG ortholog2880.D7FHH1
Hectar predicted targeting categoryother localisation
EggNOG OGs2BFIX@1,2S176@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size676
Cds size672
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig1184.1310.1prot_D-herbacea_F_contig1184.1310.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig1184 30598..31949 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927574.4977775-CDS-D-herbacea_F_contig1184:30597..308791622927574.4977775-CDS-D-herbacea_F_contig1184:30597..30879Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1184 30598..30879 -
1690790240.404422-CDS-D-herbacea_F_contig1184:30597..308791690790240.404422-CDS-D-herbacea_F_contig1184:30597..30879Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1184 30598..30879 -
1622927574.5128968-CDS-D-herbacea_F_contig1184:31137..313251622927574.5128968-CDS-D-herbacea_F_contig1184:31137..31325Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1184 31138..31325 -
1690790240.4195633-CDS-D-herbacea_F_contig1184:31137..313251690790240.4195633-CDS-D-herbacea_F_contig1184:31137..31325Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1184 31138..31325 -
1622927574.528096-CDS-D-herbacea_F_contig1184:31747..319491622927574.528096-CDS-D-herbacea_F_contig1184:31747..31949Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1184 31748..31949 -
1690790240.4321613-CDS-D-herbacea_F_contig1184:31747..319491690790240.4321613-CDS-D-herbacea_F_contig1184:31747..31949Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1184 31748..31949 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927574.545373-UTR-D-herbacea_F_contig1184:31949..319521622927574.545373-UTR-D-herbacea_F_contig1184:31949..31952Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig1184 31950..31952 -
1690790240.443696-UTR-D-herbacea_F_contig1184:31949..319521690790240.443696-UTR-D-herbacea_F_contig1184:31949..31952Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig1184 31950..31952 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig1184.1310.1

>prot_D-herbacea_F_contig1184.1310.1 ID=prot_D-herbacea_F_contig1184.1310.1|Name=mRNA_D-herbacea_F_contig1184.1310.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=224bp
MREATLSSNEALTGGGVSILDGGSFTENEMFFVGCIFEGNAATNGGGLHS
TAENEMIYHSSFTDNYAETSGGAIYHMGFVTLQNVSFVDNRASDDGMAVT
SIGELDETSNATFTGNTFYCPTDEYSVETNGNSDANSCRFQLVCTECSTG
CDNIPYGLSLLGDSSGGIPACETLPSGVVHPPNGGATIETLKLEKGYYRT
SKMSSNILECQQRGVCLGGTNPER
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mRNA from alignment at D-herbacea_F_contig1184:30598..31952-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig1184.1310.1 ID=mRNA_D-herbacea_F_contig1184.1310.1|Name=mRNA_D-herbacea_F_contig1184.1310.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=1355bp|location=Sequence derived from alignment at D-herbacea_F_contig1184:30598..31952- (Desmarestia herbacea DmunF female)
GTCATGCGCGAAGCCACGTTATCGTCGAATGAGGCCCTTACTGGTGGCGG CGTCTCGATCCTGGACGGAGGATCCTTTACGGAAAACGAAATGTTCTTCG TTGGGTGTATATTCGAGGGCAACGCCGCTACCAATGGGGGTGGACTGCAC AGCACAGCTGAAAACGAGATGATCTATCATTCGAGTTTCACGGACAACTA CGCCGGTAGGAGTTTCTGCCTCTCGCGTATTCCACCCCCATGGCGTTGGT TCCTCTCTCAATCGTGTAATGTGGAAAATGTTTATCGAGTCGGGCAGTGC GTACCACTGTAGGAACATGTTTTGATTTCTGCTGCTGTTGTAGCTGTCCG TATATTGTGGCAAACACGCAGTACCGATACACACAAACACACAGAACGAC GTACCATGGCTCGTAGGCTGTCCCGATCATTGTGAGTATAGTTGTATCGT TCCATTGTATCTGCCGGCTGCGTTAGCGGCGATAGATCTATCTCATATAT GTTGGGGTTGTATCCTCAACATCACGGTAACGTTTTGGAAGACGCGTTCC TATGTATGACGTGCCAACTACCTATTTCATGTATATGAAATATCCGCGCT TGTGTGTACTCCCGACCTGTTCTACAGAAACGTCTGGAGGAGCCATCTAC CACATGGGTTTCGTGACGCTCCAGAACGTCAGTTTCGTAGACAACCGAGC CAGCGACGATGGCATGGCTGTCACCAGCATCGGGGAACTCGATGAAACCT CCAATGCCACGTTCACGGGAAACACGTTTTATTGTCCCACCGATGAGTAC AGCGTCGAAACGAATGTAAGATTTGTCGATGGGCCGAGCATCGCCCTTTC TTCGAGCTACTCGTAGGGTAGCTACTGTACACTAGCGAACCCCGCGTGGT GAGGTAAATCTAGGAATCTCACCACGTAAGTGCCTGGCGGTCGCCTTGTT GTTAGCGGGGACTGATTTGCAATGTCAACGGCGCACAGTTTACGTGTGTT CCGGTCCTTTTTATGCGCGACGCCGTGTTCGTTTACTGCTGTATGCGTTA TGGCTCTTCTTGTTCTGCTCTAGGGTAATTCCGACGCCAACAGTTGCCGC TTCCAGCTTGTATGCACGGAATGTTCCACCGGGTGCGATAACATCCCGTA CGGTCTGTCGCTGCTGGGTGATAGCAGTGGCGGGATACCCGCCTGCGAGA CGTTGCCTAGCGGCGTTGTCCACCCACCAAACGGCGGCGCGACTATCGAG ACCCTCAAGCTAGAGAAGGGCTACTACCGCACCTCGAAAATGAGTAGCAA TATTCTCGAATGTCAACAAAGGGGTGTCTGCCTTGGGGGTACCAATCCCG AGCGG
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Coding sequence (CDS) from alignment at D-herbacea_F_contig1184:30598..31952-

>mRNA_D-herbacea_F_contig1184.1310.1 ID=mRNA_D-herbacea_F_contig1184.1310.1|Name=mRNA_D-herbacea_F_contig1184.1310.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=1344bp|location=Sequence derived from alignment at D-herbacea_F_contig1184:30598..31952- (Desmarestia herbacea DmunF female)
ATGCGCGAAGCCACGTTATCGTCGAATGAGGCCCTTACTGGTGGCGGCGT
CTCGATCCTGGACGGAGGATCCTTTACGGAAAACGAAATGTTCTTCGTTG
GGTGTATATTCGAGGGCAACGCCGCTACCAATGGGGGTGGACTGCACAGC
ACAGCTGAAAACGAGATGATCTATCATTCGAGTTTCACGGACAACTACGC
CGATGCGCGAAGCCACGTTATCGTCGAATGAGGCCCTTACTGGTGGCGGC
GTCTCGATCCTGGACGGAGGATCCTTTACGGAAAACGAAATGTTCTTCGT
TGGGTGTATATTCGAGGGCAACGCCGCTACCAATGGGGGTGGACTGCACA
GCACAGCTGAAAACGAGATGATCTATCATTCGAGTTTCACGGACAACTAC
GCCGAAACGTCTGGAGGAGCCATCTACCACATGGGTTTCGTGACGCTCCA
GAACGTCAGTTTCGTAGACAACCGAGCCAGCGACGATGGCATGGCTGTCA
CCAGCATCGGGGAACTCGATGAAACCTCCAATGCCACGTTCACGGGAAAC
ACGTTTTATTGTCCCACCGATGAGTACAGCGTCGAAACGAATAAACGTCT
GGAGGAGCCATCTACCACATGGGTTTCGTGACGCTCCAGAACGTCAGTTT
CGTAGACAACCGAGCCAGCGACGATGGCATGGCTGTCACCAGCATCGGGG
AACTCGATGAAACCTCCAATGCCACGTTCACGGGAAACACGTTTTATTGT
CCCACCGATGAGTACAGCGTCGAAACGAATGGTAATTCCGACGCCAACAG
TTGCCGCTTCCAGCTTGTATGCACGGAATGTTCCACCGGGTGCGATAACA
TCCCGTACGGTCTGTCGCTGCTGGGTGATAGCAGTGGCGGGATACCCGCC
TGCGAGACGTTGCCTAGCGGCGTTGTCCACCCACCAAACGGCGGCGCGAC
TATCGAGACCCTCAAGCTAGAGAAGGGCTACTACCGCACCTCGAAAATGA
GTAGCAATATTCTCGAATGTCAACAAAGGGGTGTCTGCCTTGGGGGTACC
AATCCCGAGCGGGGTAATTCCGACGCCAACAGTTGCCGCTTCCAGCTTGT
ATGCACGGAATGTTCCACCGGGTGCGATAACATCCCGTACGGTCTGTCGC
TGCTGGGTGATAGCAGTGGCGGGATACCCGCCTGCGAGACGTTGCCTAGC
GGCGTTGTCCACCCACCAAACGGCGGCGCGACTATCGAGACCCTCAAGCT
AGAGAAGGGCTACTACCGCACCTCGAAAATGAGTAGCAATATTCTCGAAT
GTCAACAAAGGGGTGTCTGCCTTGGGGGTACCAATCCCGAGCGG
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