mRNA_D-herbacea_F_contig117.1239.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig117.1239.1
Unique NamemRNA_D-herbacea_F_contig117.1239.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
[Close]
BLAST of mRNA_D-herbacea_F_contig117.1239.1 vs. uniprot
Match: A0A6H5JL66_9PHAE (MFS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL66_9PHAE)

HSP 1 Score: 120 bits (302), Expect = 1.390e-29
Identity = 57/84 (67.86%), Postives = 70/84 (83.33%), Query Frame = 1 
Query:  112 TFSEAIDAIGMGPFQKRLFIMCGMAWLIDAIEVLVIAFAIDDIARTFHLGSFSKGLVGSASFFGMLFGAIFWSVYADRNGRRGA 363
            TFSEAID +G+GPFQKRL I+CG+ W +D++EVLV+AFA++ IA +F L S  KGLVGSASFFGML GA FWS+YAD+ GRR A
Sbjct:   55 TFSEAIDRVGLGPFQKRLVIICGLGWAVDSMEVLVLAFALEAIATSFELSSVGKGLVGSASFFGMLVGAGFWSIYADKRGRRTA 138
[Close]
BLAST of mRNA_D-herbacea_F_contig117.1239.1 vs. uniprot
Match: A0A6H5JUA1_9PHAE (MFS domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JUA1_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 5.200e-20
Identity = 43/66 (65.15%), Postives = 54/66 (81.82%), Query Frame = 1 
Query:  166 FIMCGMAWLIDAIEVLVIAFAIDDIARTFHLGSFSKGLVGSASFFGMLFGAIFWSVYADRNGRRGA 363
            F++C   W+IDA+E+LV+AF ++DIA TF LGS  KGL+GSASFFGML GA FWS+YAD+ GRR A
Sbjct:   11 FVICCNGWVIDAMEILVVAFVLEDIATTFELGSVGKGLIGSASFFGMLVGAGFWSIYADKRGRRTA 76
[Close]
BLAST of mRNA_D-herbacea_F_contig117.1239.1 vs. uniprot
Match: A0A8J3X491_9ACTN (MFS transporter n=1 Tax=Planosporangium mesophilum TaxID=689768 RepID=A0A8J3X491_9ACTN)

HSP 1 Score: 90.1 bits (222), Expect = 1.030e-18
Identity = 44/83 (53.01%), Postives = 58/83 (69.88%), Query Frame = 1 
Query:  109 MTFSEAIDAIGMGPFQKRLFIMCGMAWLIDAIEVLVIAFAIDDIARTFHLGSFSKGLVGSASFFGMLFGAIFWSVYADRNGRR 357
            M   EAID  G G FQ+RLF++CG+ W  DA E+L+++FA+  IAR FHL   + G+V +++F GML GA FW V ADR GRR
Sbjct:    1 MDIQEAIDEAGFGRFQRRLFLVCGVTWAADAAEILLLSFALPGIAREFHLTPPAAGVVVTSTFAGMLVGAWFWGVMADRVGRR 83
[Close]
BLAST of mRNA_D-herbacea_F_contig117.1239.1 vs. uniprot
Match: A0A7W5AQM6_9ACTN (Putative MFS transporter n=6 Tax=Actinoplanes TaxID=1865 RepID=A0A7W5AQM6_9ACTN)

HSP 1 Score: 85.1 bits (209), Expect = 6.310e-17
Identity = 40/83 (48.19%), Postives = 56/83 (67.47%), Query Frame = 1 
Query:  109 MTFSEAIDAIGMGPFQKRLFIMCGMAWLIDAIEVLVIAFAIDDIARTFHLGSFSKGLVGSASFFGMLFGAIFWSVYADRNGRR 357
            M   +AID +G G FQ+RLF++CG+ W  DA E+L+++FA+  +   F L S   GLV +++F GML GA FW + ADR GRR
Sbjct:    1 MHIQDAIDRVGFGRFQRRLFLLCGITWAADAAEILLLSFALPGVTEEFGLTSGQAGLVVASTFAGMLAGAWFWGIMADRVGRR 83
[Close]
BLAST of mRNA_D-herbacea_F_contig117.1239.1 vs. uniprot
Match: A0A497PM95_THOAR (MFS transporter (Fragment) n=1 Tax=Thorarchaeota archaeon (strain OWC) TaxID=2053491 RepID=A0A497PM95_THOAR)

HSP 1 Score: 83.6 bits (205), Expect = 8.260e-17
Identity = 41/83 (49.40%), Postives = 53/83 (63.86%), Query Frame = 1 
Query:  109 MTFSEAIDAIGMGPFQKRLFIMCGMAWLIDAIEVLVIAFAIDDIARTFHLGSFSKGLVGSASFFGMLFGAIFWSVYADRNGRR 357
            MTF EAID IG G FQ++L  +CG  W  DA+EVL+I+FA+  + R + L     G +G+A F GML GA FW   +D  GRR
Sbjct:    9 MTFDEAIDRIGFGSFQRKLLAICGAGWAADAMEVLLISFALPGVIREWGLTPAQAGFIGTAIFLGMLAGAWFWGTISDYIGRR 91
[Close]
BLAST of mRNA_D-herbacea_F_contig117.1239.1 vs. uniprot
Match: A0A2N1S9R7_9SPIR (MFS transporter n=1 Tax=Spirochaetae bacterium HGW-Spirochaetae-3 TaxID=2013835 RepID=A0A2N1S9R7_9SPIR)

HSP 1 Score: 84.7 bits (208), Expect = 8.580e-17
Identity = 37/84 (44.05%), Postives = 60/84 (71.43%), Query Frame = 1 
Query:  106 SMTFSEAIDAIGMGPFQKRLFIMCGMAWLIDAIEVLVIAFAIDDIARTFHLGSFSKGLVGSASFFGMLFGAIFWSVYADRNGRR 357
            S++F EA++ +G G FQ+RL ++CG+ W  DA+EVL+++FA+  ++  + L +  KGL+ ++ F GML GA+FW   +DR GRR
Sbjct:    3 SVSFDEALEKVGYGRFQRRLLVICGLGWAADAMEVLLVSFALPAMSAEWSLSAAQKGLLATSIFLGMLVGAVFWGRLSDRIGRR 86
[Close]
BLAST of mRNA_D-herbacea_F_contig117.1239.1 vs. uniprot
Match: A0A3N5WNN0_9CHLR (MFS transporter n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A3N5WNN0_9CHLR)

HSP 1 Score: 84.0 bits (206), Expect = 1.640e-16
Identity = 38/83 (45.78%), Postives = 60/83 (72.29%), Query Frame = 1 
Query:  109 MTFSEAIDAIGMGPFQKRLFIMCGMAWLIDAIEVLVIAFAIDDIARTFHLGSFSKGLVGSASFFGMLFGAIFWSVYADRNGRR 357
            ++F +AI   G G FQK+L ++CG+ W  DA+EVL+I+FA+  I++ ++L +  +GL+G+A F GML GA+FW   +DR GR+
Sbjct:    6 LSFDDAIQHAGFGRFQKKLRVICGLGWAADAMEVLLISFALPSISQEWNLTNAQRGLLGTAIFLGMLVGALFWGRLSDRVGRK 88
[Close]
BLAST of mRNA_D-herbacea_F_contig117.1239.1 vs. uniprot
Match: A0A2H5Y3R1_9CHLR (Niacin/nicotinamide transporter NaiP n=3 Tax=Chloroflexi TaxID=200795 RepID=A0A2H5Y3R1_9CHLR)

HSP 1 Score: 84.0 bits (206), Expect = 1.640e-16
Identity = 41/85 (48.24%), Postives = 58/85 (68.24%), Query Frame = 1 
Query:  103 VSMTFSEAIDAIGMGPFQKRLFIMCGMAWLIDAIEVLVIAFAIDDIARTFHLGSFSKGLVGSASFFGMLFGAIFWSVYADRNGRR 357
            +++TF EAID +G+G FQ RL  +CG  W  DA+EVL+I+FA+  I + + L +   GL+G+A F GML GA FW   +DR GR+
Sbjct:    4 LTLTFEEAIDRVGLGRFQYRLMAICGAGWAADAMEVLLISFALPAIRQEWGLTTAQAGLLGTAIFLGMLAGAWFWGTLSDRIGRK 88
[Close]
BLAST of mRNA_D-herbacea_F_contig117.1239.1 vs. uniprot
Match: A0A7Z9ZGT1_9CHLR (MFS transporter (Fragment) n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A7Z9ZGT1_9CHLR)

HSP 1 Score: 81.6 bits (200), Expect = 1.710e-16
Identity = 41/82 (50.00%), Postives = 52/82 (63.41%), Query Frame = 1 
Query:  112 TFSEAIDAIGMGPFQKRLFIMCGMAWLIDAIEVLVIAFAIDDIARTFHLGSFSKGLVGSASFFGMLFGAIFWSVYADRNGRR 357
            TF EAI  IG G FQ+RL I+CG  W  DA+EVL+IAFA+  + R + L     G +G+A F GML GA FW   +D  GR+
Sbjct:   10 TFDEAIRRIGFGAFQRRLMIICGAGWAADAMEVLLIAFALPAVIREWGLTKAQAGFIGTAIFLGMLAGAWFWGTISDYIGRK 91
[Close]
BLAST of mRNA_D-herbacea_F_contig117.1239.1 vs. uniprot
Match: A0A3M1GN84_9CHLR (MFS transporter n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A3M1GN84_9CHLR)

HSP 1 Score: 83.2 bits (204), Expect = 3.190e-16
Identity = 40/82 (48.78%), Postives = 55/82 (67.07%), Query Frame = 1 
Query:  112 TFSEAIDAIGMGPFQKRLFIMCGMAWLIDAIEVLVIAFAIDDIARTFHLGSFSKGLVGSASFFGMLFGAIFWSVYADRNGRR 357
            T+ + ID IG GPFQ++L ++CG  W  DA+EVL+IAFAI  I + ++L     GL+G+A F GML GA FW   +D  GR+
Sbjct:    9 TYDDVIDEIGYGPFQRKLMLICGAGWAADAMEVLLIAFAIPAIIKEWNLTKGEAGLLGTAIFLGMLAGAWFWGTISDYIGRK 90
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig117.1239.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JL66_9PHAE1.390e-2967.86MFS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JUA1_9PHAE5.200e-2065.15MFS domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A8J3X491_9ACTN1.030e-1853.01MFS transporter n=1 Tax=Planosporangium mesophilum... [more]
A0A7W5AQM6_9ACTN6.310e-1748.19Putative MFS transporter n=6 Tax=Actinoplanes TaxI... [more]
A0A497PM95_THOAR8.260e-1749.40MFS transporter (Fragment) n=1 Tax=Thorarchaeota a... [more]
A0A2N1S9R7_9SPIR8.580e-1744.05MFS transporter n=1 Tax=Spirochaetae bacterium HGW... [more]
A0A3N5WNN0_9CHLR1.640e-1645.78MFS transporter n=1 Tax=Chloroflexi bacterium TaxI... [more]
A0A2H5Y3R1_9CHLR1.640e-1648.24Niacin/nicotinamide transporter NaiP n=3 Tax=Chlor... [more]
A0A7Z9ZGT1_9CHLR1.710e-1650.00MFS transporter (Fragment) n=1 Tax=Anaerolineae ba... [more]
A0A3M1GN84_9CHLR3.190e-1648.78MFS transporter n=1 Tax=Chloroflexi bacterium TaxI... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig117contigD-herbacea_F_contig117:593530..603774 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score87.8
Seed ortholog evalue3.5e-15
Seed eggNOG ortholog2880.D7FV28
Hectar predicted targeting categoryother localisation
EggNOG free text desc.N-methylnicotinate transmembrane transporter activity
EggNOG OGsKOG0253@1,KOG0253@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size363
Cds size336
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig117.1239.1prot_D-herbacea_F_contig117.1239.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig117 593530..603747 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927564.2446811-CDS-D-herbacea_F_contig117:593529..5935911622927564.2446811-CDS-D-herbacea_F_contig117:593529..593591Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig117 593530..593591 -
1690790235.328493-CDS-D-herbacea_F_contig117:593529..5935911690790235.328493-CDS-D-herbacea_F_contig117:593529..593591Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig117 593530..593591 -
1622927564.2569113-CDS-D-herbacea_F_contig117:594532..5946501622927564.2569113-CDS-D-herbacea_F_contig117:594532..594650Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig117 594533..594650 -
1690790235.3418643-CDS-D-herbacea_F_contig117:594532..5946501690790235.3418643-CDS-D-herbacea_F_contig117:594532..594650Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig117 594533..594650 -
1622927564.269249-CDS-D-herbacea_F_contig117:603591..6037471622927564.269249-CDS-D-herbacea_F_contig117:603591..603747Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig117 603592..603747 -
1690790235.350182-CDS-D-herbacea_F_contig117:603591..6037471690790235.350182-CDS-D-herbacea_F_contig117:603591..603747Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig117 603592..603747 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927564.3209956-UTR-D-herbacea_F_contig117:603747..6037741622927564.3209956-UTR-D-herbacea_F_contig117:603747..603774Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig117 603748..603774 -
1690790235.3601296-UTR-D-herbacea_F_contig117:603747..6037741690790235.3601296-UTR-D-herbacea_F_contig117:603747..603774Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig117 603748..603774 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig117.1239.1

>prot_D-herbacea_F_contig117.1239.1 ID=prot_D-herbacea_F_contig117.1239.1|Name=mRNA_D-herbacea_F_contig117.1239.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=112bp
MVDHNLVQTVDDESSSVNGDGTPSSVSMTFSEAIDAIGMGPFQKRLFIMC
GMAWLIDAIEVLVIAFAIDDIARTFHLGSFSKGLVGSASFFGMLFGAIFW
SVYADRNGRRGA
back to top

mRNA from alignment at D-herbacea_F_contig117:593530..603774-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig117.1239.1 ID=mRNA_D-herbacea_F_contig117.1239.1|Name=mRNA_D-herbacea_F_contig117.1239.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=10245bp|location=Sequence derived from alignment at D-herbacea_F_contig117:593530..603774- (Desmarestia herbacea DmunF female)
AGCAAACAACAGCGGAGTCAACCAAAAATGGTCGATCACAATTTAGTACA
GACGGTTGACGATGAATCGTCCTCAGTGAATGGGGACGGCACACCATCAT
CAGTGTCTATGACGTTTTCGGAAGCGATCGATGCCATCGGGATGGGCCCG
TTCCAGAAAAGGCTTTTCATCATGTGCGGCATGGTGAGTTTGTTTGTGGT
TTGCTGCCTTGTTGCACGCCACAAATGGTCCTGCTGTGCAGCAGAGCTGG
AGCTGCGTGTACTACTGTAGTTTGCGGTTTTTCGCTGGTTCACTCGTTGT
TCTGTGTGGTGCAATGATGTGGGCGTCGTCTGGTATCGCAGATCGACGAG
CTCTGTGTGTACCTAGTATGATACTACTGTGCTGCTGACTACTTCATGCT
ACTACTACTACTGCTGTCTGTTGCACGGACAGAAGACGCCACCAACAACG
ATACCGTGACATTCTTAGTGCGGTTGTATCATCATATCATACTATACTAA
TACTGCTAATACTACTGTTGTGTCTTTTGTAGTGTCATACCTGAGAAAAA
TTTTTTCTGTGTTCTCCGGATCTTTCTACATAGGGCTCAGCACTTTTGTG
ACCACGGGCTAGATCTTGGACGATGAGCTAATGTGATGAATCAACAACAA
CAACCTGAGAAACAACAACACACCTGGCTCGTACGTTGTACTACTCGGCT
GCAGCTACGTACGATAATACTACTACTACTACTACTACTACTGAACTACC
GTCGTAGTTGTGGTATGTGGTAATAGCGCTCGTACAACAACATGCTATTA
ATACTTGAATATCTTGCAGCGACCGACCTTCTTCGACGGACCTTCCACTG
ACCTTCGACTGACTACTACAGACTACATACACACAACAGTAGTAGTAGTG
TTAATACCAGATGTATATGACTACATGGCTACTACTCCAACTACTCTACT
ACACTGTCTGTTGTACTGTTGTTGTCTGTATGGCAAGTAAAGAGAACAAG
TTGATGAGGGTCTCTTCGTTTTTTTTCTTCAATTTTTTCAGGGCAAATTT
ACTCGTCGGAAGTGTTTTTTTAGACGGTATCGAGGCCAAGGGGTTGGCGC
AGTGGTTATGGTGTTGCCTCTGTGTTGGCGGAAGTTGGGGGTTCTATTCC
CGGTGGCACTTTTCTGTGCTGTCTTCCGTCGCGGAAAACGCTAGAGCGTG
AATAAGCACAATTCGATGAAAGTCGACGAGGGAAGAAAGTGCTGCACTCT
TCTCGCGATAAAAATGTAGGCACGTACCGTAGTGGGAAGGCGGGAGGAGG
AGCGCCTACTATGTGACCCCGGATCTGAGTTACGAAGTGAGATGGAGCTA
GACAAATCCCTATACATATATTTTTATTATTTAACTTACAAATACATCAG
CCGTGACGTTCCAAACTGGTTCGGGGGCCAGGGGATAATCGTCAATCTCA
CTGTGTGATACTTCGGTCGCGCGGATTCTATCGGTCCTCAGACAAACCAC
AGCGTAGTAACTCCCCTGGGGTGGCCCAGGCTCAACAAGATCATGGCGAG
AGGGTAATTTGGGCCTCATTATCATCTTGTGTACTAGACTATAGCCTTTC
TGAGGGGGACAAAAACGGAAAACAAATATCAAACCACGAATTCAAGATAT
GCCAAGTCAAACCAAACAAGCGGCAGAAAAACAAAACAAAAAACAAAACA
AAAAACAAAACCAGATAGAAAATTAAAACAAAAACAGACAAATAGCACAA
ATACAGTCAGCCCAATAAATTTGAGACTCCCTGATTTGTTGAGGCTGCGT
AGTACGTAGTCAGGATTGCTTGTAGTCCAGGCCAGTTGCATCGCTTTTTA
GTTCAAGGTCAGCACGCGACGGCAGACGTACACCTCGTATATCTCCCGTT
TACAGTTATCAGCTGTACGTCTTCTCACACTCAAAATCATAGTACAAGTG
GTTCACCTGTGATTGAAGTGTCACGAAGATCCAAGGAGTCTTAGATGTCG
GAGAGTAAGACGTGCGAGTGTGCAGCTACTACAGCATACCATTCTCTTTG
CCTCAGGCATACCGGAGTTCCCTACGTCAAACACAAGGGCTGGATCCAAA
AACCCGCTAGTCCGAAATCGTATCAGGCATTGAGAAGTGCTAAAAAAGCA
AAGCCGCACACTCATCATCGTGTCCTTTTTATGATGATGACATCGCACAC
TTCGAGGTAGTCGTAGAAATGTCGACCCCTCTCCGAAGTCGAAGTCGGTG
ACAAAATCCAGATGCCGTGCCAATTACGTGGTCAGAATGGATTTTTGAGC
ACCTGAAAACAAAAGAAAAAATAAATAAATAAAAAAAAAAAATATATATA
TATATATATATATTATATATAACAAACAACATACATATATACGTTACGTC
ACACACAAGTAAGAATACAACGGTCGTCAGGAAGAAAATTAATTATTACA
GAAAAGATTATTACAAATCGAATTACGGATCCCATGATGTAAAACAAAAG
TTGAATACAAAGAAAGGTTGAACATAGTGCAGACAGTAAATCCATTTTGT
GAATGGAGCCCGAAGTGAAAGTAAAACAAAAACAAAACAAAACATGAGCA
TGAGGGTCGTTCCCCAAGAAAATTGCAAAGACGAGCTTTGCCCATCCTTG
GCTCGACGTATACCCAACGGAACCTCAATTTTTCGACACCGTTCGCAGGC
CTCTAAGCTCTCACGTAAGCTACCTCGTGGGGCCGTCTTTACGCGCTTGG
TATTATTATTTAACTTACAAATACATCAGCCGTGACGTTCCAAACTGGTT
CGGGGGCCAGGGGATAATCGTCAATCTCACTGTGTGATACTTCGGTCGCG
CGGATTCTATCGGTCCTCAGACAAACCACAGCGTAGTAACTCCCCTGGGG
TGGCCCAGGCTCAACAAGATCATGGCGAGAGGGTAATTTGGGCCTCATTA
TCATCTTGTGTACTAGACTATAGCTTTTTGTATATGTATAAGGGTGTTTG
CGATTTCCAAATTTTGGTTTTGAAAGTTCGATTGTATTACACCGAGACCG
CCGAACGGGAACATAAATTGAACTTTGACCAAATTTTGGTTTTCAATTTC
CATGAAATCACACATATGACCGACCATTTGCGACCACGACATTTGAAATG
AAATTTTGATTGTGTGTTGGTGCTTGTGATTGATTGTATTGGAGAGAATT
CCCGGTAAACACCCCGAGCTCGTAAATATAAACCTATCCCTAGGATTGTC
CCAAACGCACGACAGCGCAGAGTTCAACCATGGACCCTCGCCCCCGGATC
TTCGCGGAAAAAACCGCACAAACACCATCATAGTAACAAAAACGGCTTTG
CATTTCACTGCAAATAACGCCCTTCTTTTTGCCCGGAACGACACAACAAA
TCGTACGAGTAAGAGATTCAAAAACGCACCACAGGTACAGCCGGGAGTTA
TACGACCGACCGACGGCACCGTTTATGCTGAAGGTGCGTATGTTAACCCT
TACAATACCGGCTGGCTATCAAAAATAAAAAAAAAACACAAATTGTGGAG
ATGACCTTTATAAGGGGTAAATTCCCACAACGTCCGTCGAGACAAAACCC
TTTTATCACATTGGCGCCGTCGATGAGATATCTGACTTTAGGTTGGCAAA
GACCCGGGTTCAATTCCCGCCACTCACCATAAATCCTCGAAAAAACGCTA
TTCCTGGAAAAATGGTGGGGGAACCAAAAAGTATGATATTCGAACTGATG
AAACTTCTGATGACGTGGTGGGCGTAGCAAACCCACACCAAAACACGCAC
TGAAGATTGTGGATAAAAAAAGGGAGTGTTTCGCCGCCAGCCGGTCGGGT
TCCGGTTACCTCTAAGAAGACTTCTTGCCTAAGAGCAAAAAAAGTCTCAA
AAAGGGGGGGGTAATGTGGAGATGACCTTTATAAGGGGTAAATTCCCACA
ACGTCCGTCGAGACAAAACACTTTTATCACAAAATCGCAATATTTTTAAA
CGCAAGCTTCTGATTGGCTCCGCAACCTAAACTATACGCAAGCAGGCAGG
TGTTTCATTTTTAGGTAGCAGGTGACGTATGATGTCGATATACACCTCAC
TTTAGTGTGCCAAGTCTAAACCAAGGTAATTTCGCATTTCATCAGTGCGT
GTTGCAAATCAAAATCCTGGTGAATGATAAGAACTCTAAAACAATGTCAC
GAGCCCCTTGAAAAAAGTTTGGGTCAAGATACTTGACTTTAGTGGGTGTA
AGTTCCCTAGGGGTCAGCGAAAAAAGGTTGTATAGGGTGTTCCAAGGACA
CTCGTGCAGCAGTTGTGTCCGGGGAACACAAAGAGAGCTATAATAAATAG
TAGTCGAGGTGAAGGAGAAGTCTTCGCTCCCCACAGACGTCGTCTAGGCG
AAGTACCACGAAGAGGGTACGAACTCGGGCGCTGCTAGGCGTTCGCATGT
GTTGTCCCTCGAAAATACCTTGGGTGAATTTCGTCTCTCCCTCGTCTTTT
TCTGTTTTTCTAAGAGACGTGCGCGTCTTGAGGGTATGGTCGCTTCGATT
ATTCTTCGTTTTGTGTTTGGGGTAAACGCCAGCTTTTTTTTTCGAGGTGT
GCCCTCTATACACTGACCCGCATGTGCGACGCAACTTGGTTCGTTCCGAC
GTTGTACCGTGGTTGAGGAACGCGTTGCCCGGTTTCAGATAATGCAAAGC
TATGGACATGTATGTACGTGTCGTGGGGCTGGGGAGCGAATGTGCGTGGC
TTGCCTACTGCGCTATTTTGTATTTTATGTACTACTACTAGTACTACTAC
TACTGCTGACTGACTGTTTTCTGTATCATAGTTTCAAAGCATACTTACTT
GTAGCAAAGCACAGCACAACACATGAGCGAAGCAAATAAGGGTCGCGTTT
CTAACGGGCACAAAAAAGTCCACAATCGTGACAAAAAGTCCGGTTTCGTG
ACTTTTGGAAATCTTGTTTTTGCAAAAAGTCCTGTTTGAAAGTCACGAAT
CGTGATTTTTTTTTATTAGGTTTTTTCAATTAGATTCAAAATCACGATTG
TGGACCTTTTTTTTTTGGAATCGTGACATTTTTTTTTTGTCATCTTTTTG
TGTCACGATTGTGGACTTTTTTGTGCCCGTTAGAAACGACCCTAAGCAAA
CACAAGCAAACACGAGCAAAGCAGAGCAGAAGCAACCACAAGCAACCACA
AGCATAGCAAAGCAAGGCGCAACCAAACACGAGCAAAGCATACACAATCA
AAGCAAACGCAAGCCACAGAGGGCACCAGCTCTGGGCATTTCTGATTGGA
CCAAAGGCGGGACTGTCGTCACAACGCAACAATCGCTGGGTTGATAAACC
GTGATGAATCGCACGGAAGTTATTAAAAAAAAATCACCACACACTAATTA
TAAGTAGTGCTGAAATTTTGATGTGTCAAAAGTTGGCACATAATGCGGGT
AAGTATTGTAAGGGTTAAAGGCGGAGGTGATAGAAACCATGCTGTACGGA
TGTGTGACGTGGACACTTAGCCAGCAGCAATACGCCAAACTCCGAACGGC
GCACCACCGCCTTCTCCTACGAGTTGTTGGCTTCCAACGCCCAAAATGCA
CGGACCGTCTGATGTCATACGCGAAAGCCCTCAGGAAGACCCACAATGAG
AGCGTCCAAACGACTATCCGTAAACGGCGACTTCTCTTCGCGGGGGGCAT
CGCAAGGCAGCACAGCGGGCGGGAACGGCGACGGGTGATGCTCGGGAGTC
TGGCCGGTGGGGAGAACCTGGGACGCGGTAGACCGGCCAAGAACTGGGCC
CCATGCCCCTCGGATGATTTCCAAGCTTTCGGTGCCATCACGAGGGGGGA
GTCGACGGAGACCCGTCACTGGTGTTTGGAGTGGAAACTGTGACGTGGAC
AAGAGCGGCCGTCGAGTGGGGAAGGTGGTACAGGGGGGTCATGGAAGGAG
CAGAAACCTTCATGGAGACGTGACACAAAGAGGAAGCTGCGAAGAGTAGT
GCACGTCATGCGAAGAGGGCAGGGAAAGCCCGGAGTAGCAAGATGGGGAC
CGGGAGGGGCAGTAACAGCAGTAATATTATTACTGCTGCCGATGAGAGTA
CGGAGGAGATGGCAAACCGGGTAGAAATTTTTCAGTATGACTAACAGTCC
CCGTACCTCCCTCCCGTAGCCCCAAGTGTCGTTGACGTTCTGCTCTTCGT
TCTGCGTTTTTCTGTCTTCGTTCTGACTCCGTTTGTCCTGTGGCATGTTT
TGCTCGATTCTTTATTGTTTCTTCCCATCTTTTTTCTTTCTGTTCTTCGC
TCTCTTTTTTTTTATTTTGTTTTATTATTATTTAATTTTCTTCTTTTTTA
ATTTGTTTTTGCGATTTGTTTGATATGTTAGCCTGTGACCACGGAATTTC
GTGTCTTTCTAGGGTGGAAGATCCAGTACAGAGACTGAGTACGCTACTGG
ATGTCGTAGAGTGGAATGGACGACTTGTAATGTGAAGACGACAACAACTT
ACAAATACGCGTCACACGGCTGGATACCACCACCTCACCCCCGCTTTGCC
AGTTCAGCAATAATACTGTACGGGAAAACGAAAAAAAAAACCGCAGCATT
GTTTTGTTCTTGGGCAAGAGCCCTGGGCGTGTATCATACCTAGAAACCCT
CCACAACATCTTGTTCAGCCCTGTTGTTACTTATTGTAGCTTCTGGGTGG
GTGTGAACTGGGACGCATGGCCAGCTAGTTCCCTCCCTGCTACAAGTACA
GTCGAGGCGTATCTTGCTTGAACAGTTGAAAACTAAGGAAACCAAGTTCC
TCTCGACTTCGTTTCTTCAGCCTTCATCATTTGTGTGTTTTCGACTCTCA
ACGGACTAGTAAAGCCGTTCGCCAACCATACGAGCTTCGTATCCTGCCGT
GAATTTAATGTTCGTGAATCCTGAATTGTTAAAAAGTTGGCAGTTTACTG
TAAGACAGGCCTCGAGGGCGTGTCCCATTTTTTTTTTTTTTTCTCCGTCC
CATTTATTATCTTCGCCCTATTATTTCTCTAGCTCCATCTCTCTTCGTAA
CTCAGATCCCGGGTCACATAGTAGGCGTTCCTCCCGCCTTCCCACTACGG
TATGTGCCTGCATTTTTATCGCGAGAAGAGTGCAGCACTTCATTCCGTCG
TCGACTTTCATCGAATTGTGCTTACTCACGCTCTCGCGTTTTCCGCAACG
GAAGATGGCGCAGAAAAGTGCATCCGGGAATCGAACCCCCAACTTCCGCC
AACAGTGGTGAACGCTTAGTCTCGTAGACCATCGCGCCACCCCTTGGGGC
AAAAAAAAAAAACGAAATAAAAAAGCAAAATGAAAATGCTATTATTCCCG
TTTTTGCTAAAGAAAAGGCAATGTGCGTCCAAACGAACACACACACGTAA
AATCGAAAACGAGAGTAGTTAGTTGTGGCAACCACCCAAGAAGTAGTGAA
CCGCTGTATCAGTTTGGGCGACGGTACGTGTACTAGACACCGCGGCTGAG
CACAAACGAAGCGAGCATGCGAGACATCCGCCAGATTAGGCGGTGCTCGA
GGAAGGGTTGTAGCAGTGTGAAGTCATGAGGATATCAGCACCACGGATGA
TGTCATAGGTATTTCTGTTTGTTTTGTGGTCTACTGAGACGCAGTTTGAG
TCACCACTAAGGACTGTTGTATCAGGTATGGTGCAACCACCCGAAAACAT
GCAAACGACCGTAGTATCAGTTTGCGCGAATAGGTTTTAGGTAGAGCCTG
TTTTTTTTTTTTTTTTCTAGGTCCGTTTGTTTTTCGCTCGTACTCGGGCA
AGGAGAGGGCTGGAGCGCTCGCAAAAGCCATGCGGTCTAGCTCCATGATG
ATGAGGTGTCATTGGGCTGTTTCCAGGGCTTCTCACGGGCTGGCTGCACA
GTACCGGGCCGGGCCGGGTAACCCTGACCTGGCCCAGCCCGAGAAAATTT
CAGATCTCCTGACCCGGCCCGGCCCGTGATAAGTTGAGATCTCGAAACCC
GGCCAGACCTGGACCGACCTGGCCCGGCCCACGATATTTGTCAGATGTCC
AAACTCGGCTCGCCCCGACCCGAAAGATTCTCCAGATCTTCAAACCCGGC
CCGGCCCGGCCCGGCCCACCGGAGTCCAATTTCACGGGCTTCGGCCCGTA
CATACGGGTTGGCATACGAGCCGCGTCGCAGTGACCCGTGAAGGAAACCC
ATCGGCCCATGAGAAGAAGCCCATGGGCCGATGAGAATAAACTCACGGGT
CACCGTGGGTAACCGATCGAAGGTGCACGGGTTCAGCCGCCGCTACTTTG
GACTCTTCGGCGCATTTTCGGCGTACTAAAGACTAAAACGTGTTTTTCCC
GTATACAGACGCACAGCCACTATTGCTGTGCTATCATACTAGTCAGCACA
GTAGTAGTGTCGTTCACAGCCGCCCTGCGCCCTGTGCTATACCTACTATA
GATATGACGACTGTGCTGTTGTGCTACTATGATATGACCGCTCTAGTCAG
CACTGGGACTTGTAGCACAGACAACCCAGAAATCGACGTTTTGACGGGTC
CGCAAGATGAAATGAGGAAAGCACAGTTGGAGGGGTACGAACTGGCAGTC
AAGATGCAAGTTGAAGGCGCGGGGAAGAAGGTGTACGTAGTGGAATAGGA
GGTATACGGAGTGTTGTATATATAGAGCTCTACCAATATCTTTTTTGCGT
ACTTAAGGGCACCCTTGCAACCCTGGTCACATTTTTTTTTCCCCCTTTTC
GGCCGCAAACAGAGCAGCTGAATCAGTCTATATCCAAGATAATAACAAAT
CCAGCATTGGACGCCACAGGAAAGAGTATACCTCTCTCGAACTATTTCCT
TATCCGCATCCCCCCCCCCCATTCATGCTACTAAGGGGTTTCTCAGAGTC
TTTTGCGAGGCACGCACTGTGGTACTCGTCGCTTCTTCCTGGTCCTACAT
TAGCTCCAATATAACGGTATCGGATTTTTTTTTTTTCCCGACAATCTCGG
GCTGGGATTTTCTTGTAAAAATATGCATGTTTCTTATTATTATATCAGAT
GGTTGTTGTATCATACGTTGTTATACTACTGCACGCCTTGTTGTGTGATT
TTTTTTGTGTATGTACTCCACCAGGCCTGGCTCATCGATGCAATAGAAGT
GTTGGTGATCGCCTTCGCCATCGACGACATCGCAAGGACGTTTCACCTCG
GCAGCTTCTCCAAAGGCCTTGTGGGCAGCGCGAGTTTCTTCGGTGAGGGA
TGGAAGTGTCAACATGATATATATACATTTTCCAGCTGTGTGTGCCAGTA
TGATATCATACCCGGTCGACGGGTTTCAAGTTGCGTTGCATGTTGCGTTG
CACGTTGCGTTGCAATACTTAGGGGCTGGGTGCTGGCTGGCGTCCTACGA
ACTATAGGATAGCATGTACCGTACACCTTCGTATGATATCGTAACCTACA
TACATACTGCGCGGTACACATCTGTGACACCTATATGTGGAGGACGGGGT
AGGTAGATACCAGAGGCCTCCGAACGTGTCTGCCAGCGGCAGGACAGGAT
GCATCAAAACCTGACAGTCCTGGGTCACGGGGTAACGTATGCTATGAGTT
GTCCCGGCCTCCATTACTGGACGCTGAGGAAGGGAGACCGCAACGACTTC
AGCCGCAAGTTGTAGGAGAAAAAGGAGCGGTTGTGGTGCGAACATACCGC
GACGTTGTTTGTCGACGACGTGACGCACTCATCCCCCGGTTGGGCGATGC
GGGTGATACGAGAACATCAAGCCGTTATCGCTGGAGGGGGCGGGAGACAG
TGCAGCCCGCAGCACATGGAGGTCTAAGCGGGCACGTTCCTGAAGGGAAG
AAGCGGGCTATGATTCCAACGCCCGCTGCGATGATTGTGCCCACTCCCTG
ATACCAAAATCAGTCACAAGCGTTAACCCTAGTCCTGTACCCAATACCGC
TTCCCTTTGTTGTCCCCCCCCCCCCCTCCGTAAAAAGATTATTAATGTAA
TACTTCGTATTTGGAAAATACTTCAAGAGCGCCCAAATGTTGGAGGTGTC
TCTATTACAAGTAGGAACGGTTCTCCGTCTCGAAAGGGATGCATGCGTGG
TCAATGGTCAAATTACTAAGGCAAGCACCAAATAAGTAACCCCCCCCCGT
CCGTCCGTCCGTCCTCCGCTCCAACCCGAACAGGGATGCTGTTCGGCGCC
ATTTTTTGGTCTGTCTATGCCGACAGAAACGGTCGCCGGGGCGCC
back to top

Coding sequence (CDS) from alignment at D-herbacea_F_contig117:593530..603774-

>mRNA_D-herbacea_F_contig117.1239.1 ID=mRNA_D-herbacea_F_contig117.1239.1|Name=mRNA_D-herbacea_F_contig117.1239.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=672bp|location=Sequence derived from alignment at D-herbacea_F_contig117:593530..603774- (Desmarestia herbacea DmunF female)
ATGGTCGATCACAATTTAGTACAGACGGTTGACGATGAATCGTCCTCAGT
GAATGGGGACGGCACACCATCATCAGTGTCTATGACGTTTTCGGAAGCGA
TCGATGCCATCGGGATGGGCCCGTTCCAGAAAAGGCTTTTCATCATGTGC
GGCATGATGGTCGATCACAATTTAGTACAGACGGTTGACGATGAATCGTC
CTCAGTGAATGGGGACGGCACACCATCATCAGTGTCTATGACGTTTTCGG
AAGCGATCGATGCCATCGGGATGGGCCCGTTCCAGAAAAGGCTTTTCATC
ATGTGCGGCATGGCCTGGCTCATCGATGCAATAGAAGTGTTGGTGATCGC
CTTCGCCATCGACGACATCGCAAGGACGTTTCACCTCGGCAGCTTCTCCA
AAGGCCTTGTGGGCAGCGCGAGTTTCTTCGGCCTGGCTCATCGATGCAAT
AGAAGTGTTGGTGATCGCCTTCGCCATCGACGACATCGCAAGGACGTTTC
ACCTCGGCAGCTTCTCCAAAGGCCTTGTGGGCAGCGCGAGTTTCTTCGGG
ATGCTGTTCGGCGCCATTTTTTGGTCTGTCTATGCCGACAGAAACGGTCG
CCGGGGCGCCGGATGCTGTTCGGCGCCATTTTTTGGTCTGTCTATGCCGA
CAGAAACGGTCGCCGGGGCGCC
back to top