mRNA_D-herbacea_F_contig117.1232.1 (mRNA) Desmarestia herbacea DmunF female
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Overview
Homology
BLAST of mRNA_D-herbacea_F_contig117.1232.1 vs. uniprot
Match: UPI001F1F2B9F (hypothetical protein n=1 Tax=Sinobacterium norvegicum TaxID=1641715 RepID=UPI001F1F2B9F) HSP 1 Score: 74.3 bits (181), Expect = 2.140e-12 Identity = 43/124 (34.68%), Postives = 56/124 (45.16%), Query Frame = 3
Query: 51 HVHGSSCGHVAVLHEDHVDFLMEGGQLECYGGREKTRQGWVSSTNEGAADADCGCDNSASKSTAGAVATEHGDVHWNGTRPDG--PRGQCMGHTHGPNCGHDIIHHDGHLDYVVNGRLIHPIAD 416
H HGS+CGH A+ H DH+D+L +G +GG CD EH + + T P P C GH HGP+CGH+ I HD H D++V+GRL H D
Sbjct: 12 HTHGSNCGHTAIRHGDHIDYLADGKLHHPHGGH---------------------CD-------------EH-SIELSNTNPAQCHPTQGCAGHVHGPDCGHEAIQHDDHTDFIVDGRLHHQHGD 100
BLAST of mRNA_D-herbacea_F_contig117.1232.1 vs. uniprot
Match: A0A7Y4E348_9VIBR (Uncharacterized protein n=4 Tax=Vibrio TaxID=662 RepID=A0A7Y4E348_9VIBR) HSP 1 Score: 72.0 bits (175), Expect = 1.460e-11 Identity = 42/123 (34.15%), Postives = 54/123 (43.90%), Query Frame = 3
Query: 51 HVHGSSCGHVAVLHEDHVDFLMEGGQLECYGGREKTRQGWVSSTNEGAADADCGCDNSASKSTAGAVATEHGDVHWNG---TRPDG--PRGQCMGHTHGPNCGHDIIHHDGHLDYVVNGRLIH 404
H HG +CGH A+ H+ HVD+L++G +G +H D H G T PDG P C GH HGP CGH+ I H H+DY+V+GRL H
Sbjct: 12 HAHGPNCGHTAIRHDGHVDYLVDGTLHHPHG--------------------------------------DHCDEHVIGLSDTNPDGCHPVHSCGGHVHGPGCGHEAIQHGDHVDYIVDGRLHH 96
BLAST of mRNA_D-herbacea_F_contig117.1232.1 vs. uniprot
Match: A0A1X3DHK2_9NEIS (Uncharacterized protein n=6 Tax=Neisseria TaxID=482 RepID=A0A1X3DHK2_9NEIS) HSP 1 Score: 71.6 bits (174), Expect = 1.940e-11 Identity = 43/124 (34.68%), Postives = 51/124 (41.13%), Query Frame = 3
Query: 51 HVHGSSCGHVAVLHEDHVDFLMEGGQLECYGGREKTRQGWVSSTNEGAADADCGCDNSASKSTAGAVATEHGDVHWNGTRPDG--PRGQCMGHTHGPNCGHDIIHHDGHLDYVVNGRLIHPIAD 416
HVHGS CGH A+ H DHVD+L + EH + N T PDG P C GH HGP+CGH+ + H H DY+VNGRL H D
Sbjct: 12 HVHGSGCGHTAIKHGDHVDYLHDXXXXXXXX----------------------------------XXYDEH-SLDVNETNPDGCRPVHDCAGHVHGPDCGHEAVPHGDHTDYIVNGRLHHQHGD 100
BLAST of mRNA_D-herbacea_F_contig117.1232.1 vs. uniprot
Match: A3WYU0_9BRAD (Uncharacterized protein n=1 Tax=Nitrobacter sp. Nb-311A TaxID=314253 RepID=A3WYU0_9BRAD) HSP 1 Score: 71.2 bits (173), Expect = 2.940e-11 Identity = 45/125 (36.00%), Postives = 52/125 (41.60%), Query Frame = 3
Query: 51 HVHGSSCGHVAVLHEDHVDFLMEGGQLECYGGREKTRQGWVSSTNEGAADADCGCDNSASKSTAGAVATEHGDVHWNGTRPD------GPRGQCMGHTHGPNCGHDIIHHDGHLDYVVNGRLIHP 407
H HG SCGHVAV H DHVD+L +G G V EH + N PD G G GH HGP+CGH + H H+DY+VNGRL HP
Sbjct: 11 HKHGPSCGHVAVKHGDHVDYLHDGHLHH----------------------------------QTGDVVEEH-TIEVNAENPDRCTPEFGHVGHDAGHVHGPDCGHQAVPHGDHVDYLVNGRLHHP 100
BLAST of mRNA_D-herbacea_F_contig117.1232.1 vs. uniprot
Match: A0A0K1NBC6_9BURK (Uncharacterized protein n=2 Tax=unclassified Ottowia TaxID=2645081 RepID=A0A0K1NBC6_9BURK) HSP 1 Score: 70.5 bits (171), Expect = 6.760e-11 Identity = 42/126 (33.33%), Postives = 52/126 (41.27%), Query Frame = 3
Query: 51 HVHGSSCGHVAVLHEDHVDFLMEGGQLECYGGREKTRQGWVSSTNEGAADADCGCDNSASKSTAGAVATEHGDVHWNGTRPDGPRGQCMGH----THGPNCGHDIIHHDGHLDYVVNGRLIHPIAD 416
H HG CGH A+ H HVD+L EG + GR + VS TN P+G C GH HGP CGH+ + H H+D++VNGRL HP D
Sbjct: 21 HQHGPGCGHTAIRHNGHVDYLQEGHLHHPHEGRVQEHSIAVSDTN-----------------------------------PEGCTPPCAGHEPGHVHGPGCGHEAVPHGNHIDFLVNGRLHHPHGD 111
BLAST of mRNA_D-herbacea_F_contig117.1232.1 vs. uniprot
Match: A0A066UK69_9VIBR (Uncharacterized protein n=1 Tax=Vibrio fortis TaxID=212667 RepID=A0A066UK69_9VIBR) HSP 1 Score: 69.7 bits (169), Expect = 9.670e-11 Identity = 41/118 (34.75%), Postives = 54/118 (45.76%), Query Frame = 3
Query: 51 HVHGSSCGHVAVLHEDHVDFLMEGGQLECYGGREKTRQGWVSSTNEGAADADCGCDNSASKSTAGAVATEHGDVHWNGTRPDGPRGQCMGHTHGPNCGHDIIHHDGHLDYVVNGRLIH 404
HVHG +CGH A+ H DH+D+L+EG +G V+ TN A+C VH C H HGP+CGH+ I H H+DY+V+GRL H
Sbjct: 12 HVHGETCGHTAIRHGDHIDYLVEGELHHPHGDHCHAHTLEVNKTNP----AECN------------------QVH-----------SCGNHIHGPDCGHEAIKHGDHVDYIVDGRLHH 96
BLAST of mRNA_D-herbacea_F_contig117.1232.1 vs. uniprot
Match: A0A1Q2M5D1_9GAMM (Uncharacterized protein n=3 Tax=Microbulbifer agarilyticus TaxID=260552 RepID=A0A1Q2M5D1_9GAMM) HSP 1 Score: 69.3 bits (168), Expect = 1.250e-10 Identity = 42/120 (35.00%), Postives = 53/120 (44.17%), Query Frame = 3
Query: 51 HVHGSSCGHVAVLHEDHVDFLMEGGQLECYGGREKTRQGWVSSTNEGAADADCGCDNSASKSTAGAVATEHGDVHWNGTRPDG--PRGQCMGHTHGPNCGHDIIHHDGHLDYVVNGRLIH 404
H HG+ CGH AV H DH D+L++G +G CD EH + + T PDG P C H HGP CGH+ I H H+DY+V+GRL H
Sbjct: 12 HTHGAGCGHTAVRHGDHTDYLLDGKLHHPHGDH---------------------CD-------------EHA-IEVSATNPDGCNPVHTCGEHVHGPGCGHEAIPHGDHVDYIVDGRLHH 96
BLAST of mRNA_D-herbacea_F_contig117.1232.1 vs. uniprot
Match: A0A7X8TN54_9VIBR (Uncharacterized protein n=1 Tax=Vibrio agarilyticus TaxID=2726741 RepID=A0A7X8TN54_9VIBR) HSP 1 Score: 68.9 bits (167), Expect = 2.050e-10 Identity = 44/147 (29.93%), Postives = 61/147 (41.50%), Query Frame = 3
Query: 51 HVHGSSCGHVAVLHEDHVDFLMEGGQLECYGGREKTRQGWVSSTNEGAADADCGCDNSASKSTAGAVATEHGDVHW---NGTRPD--GPRGQCMGHTHGPNCGHDIIHHDGHLDYVVNGRLIHPIADSIGSGGETIIGGFEDHGSIR 476
HVHG +CGH A+ H DHVD+L++G +G +H D H + P+ P G+ H HGP CGH+ I H H+DY+V+GRL HP D ++DHG +
Sbjct: 17 HVHGPNCGHTAIQHGDHVDYLVDGVLHHPHG--------------------------------------DHCDEHVIAIDAKNPEQCSPVGKADEHIHGPGCGHEAIKHGDHIDYIVDGRLHHPHGDH-----------YDDHGPVE 114
BLAST of mRNA_D-herbacea_F_contig117.1232.1 vs. uniprot
Match: A0A2K1CCP5_9VIBR (Uncharacterized protein n=2 Tax=Vibrio TaxID=662 RepID=A0A2K1CCP5_9VIBR) HSP 1 Score: 68.6 bits (166), Expect = 2.270e-10 Identity = 45/146 (30.82%), Postives = 60/146 (41.10%), Query Frame = 3
Query: 51 HVHGSSCGHVAVLHEDHVDFLMEGGQLECYGGREKTRQGWVSSTNEGAADADCGCDNSASKSTAGAVATEHGDVHWNGTRPD--GPRGQCMGHTHGPNCGHDIIHHDGHLDYVVNGRLIHPIADSIGSGGETIIGGFEDHGSIRAL 482
H+H S+CGH A+ H +H+D+L++G +G CD EH + N P P C GH HGPNCGH+ I H H DY+V+GRL H D +DHG I +
Sbjct: 12 HIHNSNCGHTAIRHNNHIDYLVDGKLHHPHGDH---------------------CD-------------EH-TIQINDINPSICKPTTSCNGHIHGPNCGHESIVHGDHRDYIVDGRLHHQHGDHC-----------DDHGPIELI 111
BLAST of mRNA_D-herbacea_F_contig117.1232.1 vs. uniprot
Match: A0A7Y3YNW4_9VIBR (Uncharacterized protein n=1 Tax=Vibrio chagasii TaxID=170679 RepID=A0A7Y3YNW4_9VIBR) HSP 1 Score: 68.6 bits (166), Expect = 2.270e-10 Identity = 39/118 (33.05%), Postives = 52/118 (44.07%), Query Frame = 3
Query: 51 HVHGSSCGHVAVLHEDHVDFLMEGGQLECYGGREKTRQGWVSSTNEGAADADCGCDNSASKSTAGAVATEHGDVHWNGTRPDGPRGQCMGHTHGPNCGHDIIHHDGHLDYVVNGRLIH 404
H+HG CGH A+ H H D+L++G +G CD E+ DV+ N +P C H HGPNCGH+ I H H+DY+V+GRL H
Sbjct: 12 HIHGPGCGHTAIRHSGHTDYLVDGKLHHPHGDH---------------------CDEH---------VVEYSDVNPNECKPIH---SCGEHVHGPNCGHEAIQHGDHIDYIVDGRLHH 96 The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig117.1232.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-herbacea_F_contig117.1232.1 >prot_D-herbacea_F_contig117.1232.1 ID=prot_D-herbacea_F_contig117.1232.1|Name=mRNA_D-herbacea_F_contig117.1232.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=206bp MCSGASAGASSEVGAHVHGSSCGHVAVLHEDHVDFLMEGGQLECYGGREKback to top mRNA from alignment at D-herbacea_F_contig117:395757..399938- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-herbacea_F_contig117.1232.1 ID=mRNA_D-herbacea_F_contig117.1232.1|Name=mRNA_D-herbacea_F_contig117.1232.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=4182bp|location=Sequence derived from alignment at D-herbacea_F_contig117:395757..399938- (Desmarestia herbacea DmunF female)back to top Coding sequence (CDS) from alignment at D-herbacea_F_contig117:395757..399938- >mRNA_D-herbacea_F_contig117.1232.1 ID=mRNA_D-herbacea_F_contig117.1232.1|Name=mRNA_D-herbacea_F_contig117.1232.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=1236bp|location=Sequence derived from alignment at D-herbacea_F_contig117:395757..399938- (Desmarestia herbacea DmunF female)back to top |