mRNA_D-herbacea_F_contig117.1224.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig117.1224.1
Unique NamemRNA_D-herbacea_F_contig117.1224.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig117.1224.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig117contigD-herbacea_F_contig117:300966..301505 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size540
Cds size312
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927559.035603-UTR-D-herbacea_F_contig117:300965..3011931622927559.035603-UTR-D-herbacea_F_contig117:300965..301193Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig117 300966..301193 +
1690790232.2462122-UTR-D-herbacea_F_contig117:300965..3011931690790232.2462122-UTR-D-herbacea_F_contig117:300965..301193Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig117 300966..301193 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927559.048823-CDS-D-herbacea_F_contig117:301193..3015051622927559.048823-CDS-D-herbacea_F_contig117:301193..301505Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig117 301194..301505 +
1690790232.2641032-CDS-D-herbacea_F_contig117:301193..3015051690790232.2641032-CDS-D-herbacea_F_contig117:301193..301505Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig117 301194..301505 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig117.1224.1prot_D-herbacea_F_contig117.1224.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig117 301194..301505 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig117.1224.1

>prot_D-herbacea_F_contig117.1224.1 ID=prot_D-herbacea_F_contig117.1224.1|Name=mRNA_D-herbacea_F_contig117.1224.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=104bp
MQCNATIMYMLSYPFDGSCHHSTIQYGVVWCKQGEPVVVHAPSAVRKAHP
TSTTIKGCHSRHGAAGRQKALYTSAHCCIVFNYKCISHEVPNWFRGLGII
AKNF
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mRNA from alignment at D-herbacea_F_contig117:300966..301505+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig117.1224.1 ID=mRNA_D-herbacea_F_contig117.1224.1|Name=mRNA_D-herbacea_F_contig117.1224.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=540bp|location=Sequence derived from alignment at D-herbacea_F_contig117:300966..301505+ (Desmarestia herbacea DmunF female)
TAGCAGCCCGCCCAAAAACTAGCGACACCATAGAGCTAAGTAGAGAGACG
TGAAAAGGATAGCGCAAGAAACGCGCCATACGGTATAAAAAGAGGGATAC
AAAGAGGGGGGTCCAATTTTGCGGGGCGAACGTGTAACATGGCGTCCTAA
CGGGACACAAGACAGAGCATTGACTGAATCAGAGGAAAAGTTGTCTCCCG
GCCGAGTTAGTAGTTATTAAGGTGCAGCATGCAGTGTAACGCTACCATCA
TGTATATGTTATCGTATCCCTTTGATGGTTCATGTCATCATAGTACAATA
CAGTACGGTGTTGTTTGGTGCAAGCAAGGAGAGCCCGTTGTCGTACACGC
GCCATCGGCTGTCAGAAAGGCGCACCCTACGAGTACTACCATCAAGGGCT
GCCACTCGCGACACGGAGCGGCGGGACGGCAAAAGGCGCTATATACAAGT
GCACACTGTTGTATTGTTTTTAATTACAAATGCATTAGTCATGAGGTTCC
AAATTGGTTCCGGGGCTTGGGGATAATCGCCAAAAACTTC
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Coding sequence (CDS) from alignment at D-herbacea_F_contig117:300966..301505+

>mRNA_D-herbacea_F_contig117.1224.1 ID=mRNA_D-herbacea_F_contig117.1224.1|Name=mRNA_D-herbacea_F_contig117.1224.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=624bp|location=Sequence derived from alignment at D-herbacea_F_contig117:300966..301505+ (Desmarestia herbacea DmunF female)
ATGCAGTGTAACGCTACCATCATGTATATGTTATCGTATCCCTTTGATGG
TTCATGTCATCATAGTACAATACAGTACGGTGTTGTTTGGTGCAAGCAAG
GAGAGCCCGTTGTCGTACACGCGCCATCGGCTGTCAGAAAGGCGCACCCT
ACGAGTACTACCATCAAGGGCTGCCACTCGCGACACGGAGCGGCGGGACG
GCAAAAGGCGCTATATACAAGTGCACACTGTTGTATTGTTTTTAATTACA
AATGCATTAGTCATGAGGTTCCAAATTGGTTCCGGGGCTTGGGGATAATC
GCCAAAAACTTCATGCAGTGTAACGCTACCATCATGTATATGTTATCGTA
TCCCTTTGATGGTTCATGTCATCATAGTACAATACAGTACGGTGTTGTTT
GGTGCAAGCAAGGAGAGCCCGTTGTCGTACACGCGCCATCGGCTGTCAGA
AAGGCGCACCCTACGAGTACTACCATCAAGGGCTGCCACTCGCGACACGG
AGCGGCGGGACGGCAAAAGGCGCTATATACAAGTGCACACTGTTGTATTG
TTTTTAATTACAAATGCATTAGTCATGAGGTTCCAAATTGGTTCCGGGGC
TTGGGGATAATCGCCAAAAACTTC
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