mRNA_D-herbacea_F_contig1161.1206.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig1161.1206.1
Unique NamemRNA_D-herbacea_F_contig1161.1206.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
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BLAST of mRNA_D-herbacea_F_contig1161.1206.1 vs. uniprot
Match: D7FS10_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS10_ECTSI)

HSP 1 Score: 93.6 bits (231), Expect = 2.240e-20
Identity = 61/106 (57.55%), Postives = 69/106 (65.09%), Query Frame = 1 
Query:   10 SSAPASRSGERRVSLYDVLTGDAPLPP-RG--------ERATTASGVVGAGGASSG------------VHPSLGGARRASIFDRIADVVFNEEQKEKNPVDAVAVR 264
            S+  A  SGERR+SLYDVLTG+APLPP RG        E A+T    VG G  S G            V P  GGARRASIFDRIADVVFNEEQK+++PVDA+AVR
Sbjct:   87 STVAAEGSGERRLSLYDVLTGEAPLPPTRGGLRDTASAEAASTTRREVGRGLRSGGSXXXXXXXXXXGVVPLGGGARRASIFDRIADVVFNEEQKKQDPVDAIAVR 192
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig1161.1206.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FS10_ECTSI2.240e-2057.55Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig1161contigD-herbacea_F_contig1161:69711..69977 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score94.7
Seed ortholog evalue2.3e-17
Seed eggNOG ortholog2880.D7FS10
Hectar predicted targeting categoryother localisation
EggNOG OGs2E84P@1,2SEN4@2759
Ec32 ortholog descriptionPDZ domain
Ec32 orthologEc-12_006920.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size267
Cds size267
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927558.3762977-CDS-D-herbacea_F_contig1161:69710..699771622927558.3762977-CDS-D-herbacea_F_contig1161:69710..69977Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1161 69711..69977 +
1690790231.8652365-CDS-D-herbacea_F_contig1161:69710..699771690790231.8652365-CDS-D-herbacea_F_contig1161:69710..69977Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1161 69711..69977 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig1161.1206.1prot_D-herbacea_F_contig1161.1206.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig1161 69711..69977 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig1161.1206.1

>prot_D-herbacea_F_contig1161.1206.1 ID=prot_D-herbacea_F_contig1161.1206.1|Name=mRNA_D-herbacea_F_contig1161.1206.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=89bp
MVVSSAPASRSGERRVSLYDVLTGDAPLPPRGERATTASGVVGAGGASSG
VHPSLGGARRASIFDRIADVVFNEEQKEKNPVDAVAVR*
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mRNA from alignment at D-herbacea_F_contig1161:69711..69977+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig1161.1206.1 ID=mRNA_D-herbacea_F_contig1161.1206.1|Name=mRNA_D-herbacea_F_contig1161.1206.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=267bp|location=Sequence derived from alignment at D-herbacea_F_contig1161:69711..69977+ (Desmarestia herbacea DmunF female)
ATGGTGGTATCATCGGCGCCAGCAAGCAGGTCGGGTGAAAGACGGGTCAG
CCTCTACGACGTGCTTACCGGGGACGCACCGCTACCGCCGCGTGGAGAGA
GGGCGACCACCGCCAGCGGAGTCGTCGGTGCTGGTGGTGCTAGTAGTGGC
GTACACCCATCGCTCGGGGGCGCACGGAGGGCGTCCATTTTTGATCGTAT
CGCGGACGTAGTATTCAACGAGGAGCAAAAGGAGAAGAACCCAGTTGACG
CGGTCGCTGTAAGGTGA
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Coding sequence (CDS) from alignment at D-herbacea_F_contig1161:69711..69977+

>mRNA_D-herbacea_F_contig1161.1206.1 ID=mRNA_D-herbacea_F_contig1161.1206.1|Name=mRNA_D-herbacea_F_contig1161.1206.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=534bp|location=Sequence derived from alignment at D-herbacea_F_contig1161:69711..69977+ (Desmarestia herbacea DmunF female)
ATGGTGGTATCATCGGCGCCAGCAAGCAGGTCGGGTGAAAGACGGGTCAG
CCTCTACGACGTGCTTACCGGGGACGCACCGCTACCGCCGCGTGGAGAGA
GGGCGACCACCGCCAGCGGAGTCGTCGGTGCTGGTGGTGCTAGTAGTGGC
GTACACCCATCGCTCGGGGGCGCACGGAGGGCGTCCATTTTTGATCGTAT
CGCGGACGTAGTATTCAACGAGGAGCAAAAGGAGAAGAACCCAGTTGACG
CGGTCGCTGTAAGGTGAATGGTGGTATCATCGGCGCCAGCAAGCAGGTCG
GGTGAAAGACGGGTCAGCCTCTACGACGTGCTTACCGGGGACGCACCGCT
ACCGCCGCGTGGAGAGAGGGCGACCACCGCCAGCGGAGTCGTCGGTGCTG
GTGGTGCTAGTAGTGGCGTACACCCATCGCTCGGGGGCGCACGGAGGGCG
TCCATTTTTGATCGTATCGCGGACGTAGTATTCAACGAGGAGCAAAAGGA
GAAGAACCCAGTTGACGCGGTCGCTGTAAGGTGA
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