mRNA_D-herbacea_F_contig1161.1205.1 (mRNA) Desmarestia herbacea DmunF female
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Overview
Homology
BLAST of mRNA_D-herbacea_F_contig1161.1205.1 vs. uniprot
Match: A0A6H5KCA4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCA4_9PHAE) HSP 1 Score: 452 bits (1164), Expect = 1.760e-150 Identity = 275/513 (53.61%), Postives = 322/513 (62.77%), Query Frame = 1
Query: 70 TATLNSWLILLLCSRLDAFVPGPRTAVGGGLRLAP------ASRLRVSRQERRACLGLRSTRNDDNTNXXXXXXXXXSAASNQSPREQ------PSSVI-FRVLRGGTPGARRGSSTSTATTEHRRLDNNHPDPELVEVSLDR---GGKGDIFPQDLEDFLFLARSSQPGSIGDELQRRGVRVFPKEAFSDGXXXXXXXNHMLYSWKGGGKPLPRGASMCDLPRDGQGRVRLVLWDPCGPDHPLIWAVGGEPTAEASVEVLNFPASRPDESLLEGGSSSXXXXXXXXXXXXXXXXXXXXXSRAGEFDDLRSAVVFRNWFNVDQQQAIADALAGQILSPDEDDEDNVIATDRTHFPLVDDRAALAAVGDGMLGALSTDRFSGSVSGRTPPVPVRANREFTAVCYGNEAKMDRHTDTWKEWTLIVSVGHTIPFELGSSDGAPDVSLELASGEGLLFNGHELYHAVRQVKNGTAPSFWKTHRLNTEGGFARVGLLSMKSFSSKGVVAPRWGPLDGS 1560
TA S L++LLC DAFVP R +G L AP L ++R+ R + RS+ N XXXXXXXX P+SV+ FRVLRGG P ++T P+ +LVEVSLDR GG PQDL +FLFL RSSQPGSIG++LQRRGVRVFP+EAF+D W GG +PLP M +LPRDG+GRVRLVLWDPCGPDHPL+ AV EP+ +ASVEVLNF D +GG + +FD+ RSAVVFR WF V+QQQ IAD+LA QI + D DDE + DR HFPL+ DRA LAAVGD ML ALS+DRFSG V GR PPVP RANREF AVCYG +AKM H DTWKEWTLIVS+G+TIPF+LG S G PD+ LELASGEGLLFNG+EL+H V VK GTAP+FW+TH L+ +GGFARVG LSMKSF+SKGV AP WG GS
Sbjct: 6 TAIFTSSLVVLLCPGPDAFVPSAR--IGPPLSAAPPRPRHRVEGLPLTRRTRPSLPCTRSSAQQQADNRXXXXXXXXXXXXXXXXXXXXXTANGPASVVRFRVLRGGNPRDNAAAAT--------------PEADLVEVSLDRPDSGGGMANNPQDLREFLFLVRSSQPGSIGEDLQRRGVRVFPEEAFADAEAEV--------GWAGG-RPLPLDTPMTELPRDGEGRVRLVLWDPCGPDHPLVRAVSVEPSKDASVEVLNFLLPG-DRRRHDGGEGTAGDGGGCSSGYGR------------DFDESRSAVVFRKWFTVEQQQVIADSLASQIFAED-DDEGPGLDVDREHFPLLRDRAGLAAVGDSMLSALSSDRFSGEVGGRDPPVPTRANREFNAVCYGAQAKMQEHRDTWKEWTLIVSIGNTIPFDLGMSKGRPDIRLELASGEGLLFNGYELFHEVHGVKPGTAPAFWETHALSAKGGFARVGFLSMKSFNSKGVSAPTWGVEKGS 479
BLAST of mRNA_D-herbacea_F_contig1161.1205.1 vs. uniprot
Match: D7FS11_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS11_ECTSI) HSP 1 Score: 437 bits (1123), Expect = 2.790e-144 Identity = 249/433 (57.51%), Postives = 290/433 (66.97%), Query Frame = 1
Query: 316 PSSVI-FRVLRGGTPGARRGSSTSTATTEHRRLDNNHPDPELVEVSLDR---GGKGDIFPQDLEDFLFLARSSQPGSIGDELQRRGVRVFPKEAFSD-------GXXXXXXXNHMLYSWKG-------GGKPLPRGASMCDLPRDGQGRVRLVLWDPCGPDHPLIWAVGGEPTAEASVEVLNFPASRPDESLLEGGSSSXXXXXXXXXXXXXXXXXXXXXSRAGEFDDLRSAVVFRNWFNVDQQQAIADALAGQILSPDEDDEDNVIATDRTHFPLVDDRAALAAVGDGMLGALSTDRFSGSVSGRTPPVPVRANREFTAVCYGNEAKMDRHTDTWKEWTLIVSVGHTIPFELGSSDGAPDVSLELASGEGLLFNGHELYHAVRQVKNGTAPSFWKTHRLNTEGGFARVGLLSMKSFSSKGVVAPRWGPLDGS 1560
P+SV+ FRVLRGG P + AT P+ +LVEVSLDR GG PQDL +FLFL RSSQPGSIG++LQRRGVRVFP+EAF+D GXXXXXXX +G GG+PLP M +LPRDG+GRVRLVLWDPCGP HPL+ AV EP+ +ASV VLNF P++S G +F++ RSAVVFR WF V+QQQ IAD+LA Q+ + D DDE + DR HFPL+ DRAALAAVGD ML ALS+DRFSG V GR PPVP RANREF AVCYG +AKM H DTWKEWTLIVS+G+TIPF+LG S G PD+ LELASGEGLLFNG+EL+H V VK GTAP+FW+ H LN +GGFARVG LSMKSF+SKGV AP WG G+
Sbjct: 80 PASVVRFRVLRGGNPRDNAAAXXXAAT----------PEADLVEVSLDRPDSGGGMANNPQDLREFLFLVRSSQPGSIGEDLQRRGVRVFPEEAFADAEAELGAGXXXXXXXXXXXXGEEGLSGVGWTGGRPLPLDTPMTELPRDGEGRVRLVLWDPCGPTHPLVRAVSVEPSKDASVMVLNFLL--PEDSRRHDGGEGTAGEGGGCSSGY-----------GSDFNESRSAVVFRKWFTVEQQQVIADSLASQMFAED-DDEGPGLDVDREHFPLLRDRAALAAVGDSMLSALSSDRFSGEVGGRDPPVPTRANREFNAVCYGAQAKMQEHRDTWKEWTLIVSIGNTIPFDLGVSQGRPDIRLELASGEGLLFNGYELFHEVHGVKPGTAPAFWENHALNAKGGFARVGFLSMKSFNSKGVSAPTWGVEKGT 488 The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig1161.1205.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-herbacea_F_contig1161.1205.1 >prot_D-herbacea_F_contig1161.1205.1 ID=prot_D-herbacea_F_contig1161.1205.1|Name=mRNA_D-herbacea_F_contig1161.1205.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=506bp MTRWNNTATLNSWLILLLCSRLDAFVPGPRTAVGGGLRLAPASRLRVSRQback to top mRNA from alignment at D-herbacea_F_contig1161:52586..67777- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-herbacea_F_contig1161.1205.1 ID=mRNA_D-herbacea_F_contig1161.1205.1|Name=mRNA_D-herbacea_F_contig1161.1205.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=15192bp|location=Sequence derived from alignment at D-herbacea_F_contig1161:52586..67777- (Desmarestia herbacea DmunF female)back to top Coding sequence (CDS) from alignment at D-herbacea_F_contig1161:52586..67777- >mRNA_D-herbacea_F_contig1161.1205.1 ID=mRNA_D-herbacea_F_contig1161.1205.1|Name=mRNA_D-herbacea_F_contig1161.1205.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=3036bp|location=Sequence derived from alignment at D-herbacea_F_contig1161:52586..67777- (Desmarestia herbacea DmunF female)back to top |