mRNA_D-herbacea_F_contig116.1202.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig116.1202.1
Unique NamemRNA_D-herbacea_F_contig116.1202.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
[Close]
BLAST of mRNA_D-herbacea_F_contig116.1202.1 vs. uniprot
Match: A0A6H5L845_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L845_9PHAE)

HSP 1 Score: 421 bits (1081), Expect = 3.940e-146
Identity = 198/268 (73.88%), Postives = 232/268 (86.57%), Query Frame = 2 
Query:   35 IADRKKNTIRYPSCMSAMDLEIAAGFGECAVCFEPLCTKGASVMTDGSGQSATFFRAEQLPRRICRHFLCQECAPTIIPLRCPVCRREFSATFDVPDPLANPVRWFHIVDRDESGTIEKAELVDALKGMFPIEPGALEEIIEMNWDSWDADRNGTIDAEEFRDRLAPFLAETLGNLRERINPDLPNLREQPAEWFRIWDKDASGSLERPEIVRALIKSIPGLSGRDEDWLLGTFAAIWSIIDPDKDGSITEAEFIMPEGLYETLLANY 838
            +A R++NT R    MS MDLEIAAG+GEC+VCFE LC KGASVM DGSG  A F RAE+LPRR+CRHFLCQECAPTIIP +CPVCRR+F +T DVPDP+A+PVRWFH+VDRD++G+IEK+ELVDALKGMFP+EPGALEE+IEMNW SWD D NGT+D  EFR+RLAPFLA+++GN+R+RI   LP+L  QPAEWF+ WD+D SGSLERPEIVRALIK+IP  +GRDE WL GTFAAIWSIIDPD DGSIT AEF+MP GLYETL+AN+
Sbjct:   20 LAARQRNTHRN-QWMSTMDLEIAAGYGECSVCFEHLCAKGASVMVDGSGHQAGFLRAERLPRRVCRHFLCQECAPTIIPRKCPVCRRDFVSTLDVPDPIADPVRWFHVVDRDQNGSIEKSELVDALKGMFPVEPGALEEVIEMNWRSWDTDSNGTLDTAEFRNRLAPFLAQSIGNMRQRIIRQLPDLMNQPAEWFKHWDEDESGSLERPEIVRALIKTIPEFTGRDEGWLGGTFAAIWSIIDPDGDGSITGAEFMMPGGLYETLVANF 286
[Close]
BLAST of mRNA_D-herbacea_F_contig116.1202.1 vs. uniprot
Match: D7FYD8_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYD8_ECTSI)

HSP 1 Score: 175 bits (444), Expect = 2.690e-52
Identity = 77/99 (77.78%), Postives = 88/99 (88.89%), Query Frame = 2 
Query:   77 MSAMDLEIAAGFGECAVCFEPLCTKGASVMTDGSGQSATFFRAEQLPRRICRHFLCQECAPTIIPLRCPVCRREFSATFDVPDPLANPVRWFHIVDRDE 373
            MS MDLEIAAG+GEC+VCFE LC KGASVM DGSGQ A F RAE+LPRR+CRHFLCQECAPTIIP +CPVCRR+F +T DVPDP+ +PVRWFH+VDRD+
Sbjct:    1 MSTMDLEIAAGYGECSVCFEHLCAKGASVMVDGSGQQAGFLRAERLPRRVCRHFLCQECAPTIIPRKCPVCRRDFVSTLDVPDPITDPVRWFHVVDRDQ 99
[Close]
BLAST of mRNA_D-herbacea_F_contig116.1202.1 vs. uniprot
Match: D7FYD7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYD7_ECTSI)

HSP 1 Score: 154 bits (390), Expect = 3.790e-44
Identity = 70/93 (75.27%), Postives = 83/93 (89.25%), Query Frame = 2 
Query:  560 LRERINPDLPNLREQPAEWFRIWDKDASGSLERPEIVRALIKSIPGLSGRDEDWLLGTFAAIWSIIDPDKDGSITEAEFIMPEGLYETLLANY 838
            +R+RI P LP+L++QPAEWF+ WD+D SGSLERPEIVRALIK+IP  +GRDE WL GTFAAIWSIIDPD+DGSIT AEF+MP GLYETL+AN+
Sbjct:    1 MRQRITPQLPDLKDQPAEWFKYWDEDESGSLERPEIVRALIKTIPEFTGRDEGWLGGTFAAIWSIIDPDEDGSITGAEFMMPGGLYETLVANF 93
[Close]
BLAST of mRNA_D-herbacea_F_contig116.1202.1 vs. uniprot
Match: C1E6Q1_MICCC (Uncharacterized protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1E6Q1_MICCC)

HSP 1 Score: 156 bits (394), Expect = 8.700e-42
Identity = 90/259 (34.75%), Postives = 136/259 (52.51%), Query Frame = 2 
Query:   80 SAMDLEIAAGFGECAVCFEPLCTKGASVMTDGSGQSATFFRAEQLPRRICRHFLCQECAPT--IIPLRCPVCRREFSATFDVPDPLANPVRWFHIVDRDESGTIEKAELVDALKGMFPIEPGALEEIIEMNWDSWDADRNGTIDAEEFRDR--LAPFLAETLGNLRERINPDLPNLREQPAEWFRIWDKDASGSLERPEIVRALIKSIPGLSGRDEDWLLGT---FAAIWSIIDPDKDGSITEAEFIMPEGLYETLLAN 835
            SA D  +A  +GECAVCF+PLC +  +V+T   G+     R E+   R C HF    CA    +   +CP+CR  F+    VP P  +P  WF  VD D  G +  +E+++AL+     +  A+E  +   W  WD + +G ++  E   R  L  ++ +       R  P  P++   P EWF  WD+D SG LE+ E+VRAL+K+  GL G D   L        A+W + DPD  G++   EF+M +GL +T++A+
Sbjct:   83 SARDSHVAETYGECAVCFDPLCAQRTAVLTQEHGRG---MRKERT--RSCAHFFHLACANELRVHHAKCPICRAPFNGVLPVPSPGEDPDGWFAAVDVDGDGRLSPSEVLEALRAQIRCDWHAIERQLPKLWRRWDVNGDGYVEKNELVSRGGLIEYVTKHFPKREHRERPPPPSIARAPNEWFEYWDEDGSGELEKEEVVRALVKTF-GL-GADMPSLRNIRQIVDAVWCVFDPDGSGAVDRREFLMRDGLADTIVAS 334
[Close]
BLAST of mRNA_D-herbacea_F_contig116.1202.1 vs. uniprot
Match: A0A0G4H6Z1_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4H6Z1_9ALVE)

HSP 1 Score: 150 bits (378), Expect = 9.390e-39
Identity = 88/249 (35.34%), Postives = 134/249 (53.82%), Query Frame = 2 
Query:  110 FGECAVCFEPLCTKGASVMTDGSGQSATFFRAEQLPRRICRHFLCQECAPTIIPLR---CPVCRREFSATFDVPDPLANPVRWFHIVDRDESGTIEKAELVDALKGMFPIEPGALEEIIEMNWDSWDADRNGTIDAEEFRDRLAPFLAETLGNLRERINPDLP-NLREQPAEWFRIWDKDASGSLERPEIVRALIKSIPGLSGRDEDWLLGTFA---AIWSIIDPDKDGSITEAEFIMPEGLYETLLAN 835
            + EC +CF+ L  +  +V+T         +R     RR C+H   + C   +   R   CP+CRR+F  T DVPDP  +P  WF +VD D +G +++ E+++ LK   P++   LE  ++  W  WD D +G I   E  D     L     ++  R N   P ++R + + WFR WD++++GSL++ E+ RA IK+   LS RD + + G  A   A+W   DPD  G I E EF+  EGL +T+LAN
Sbjct:  179 YAECPICFDELYKEPQAVLT---------WRG----RRCCQHVFHKRCVGDMRRARQKHCPLCRRDFDDTLDVPDPTKDPRGWFRVVDLDGNGKLDRKEVIEVLKAALPVDWKKLEARLDNLWRQWDLDGSGFISEREMLDPQRGLLVWVRNHMDVRRNRGPPPDIRREKSGWFRYWDENSNGSLDKEEVCRAFIKTF-NLS-RDSEKVAGVRALLDALWVEFDPDGSGGIDEGEFVQREGLADTILAN 412
[Close]
BLAST of mRNA_D-herbacea_F_contig116.1202.1 vs. uniprot
Match: A4S2X8_OSTLU (Uncharacterized protein n=2 Tax=Ostreococcus sp. 'lucimarinus' TaxID=242159 RepID=A4S2X8_OSTLU)

HSP 1 Score: 127 bits (318), Expect = 1.310e-30
Identity = 76/256 (29.69%), Postives = 132/256 (51.56%), Query Frame = 2 
Query:   92 LEIAAGFGECAVCFEPLCTKGASVMTDGSGQSATFFRAEQLPRRICRHFLCQECAPTI---IPLRCPVCRREFSATFDVPDPLANPVRWFHIVDRDESGTIEKAELVDALKGMFPIEPGALEEIIEMNWDSWDADRNGTIDAEEF--RDRLAPFLAETLGNLRERINPDLPNLREQPAEWFRIWDKDASGSLERPEIVRALIKS--IPGLSGRDEDWLLGTFAAIWSIIDPDKDGSITEAEFIMPEGLYETLLANY 838
            L ++    EC  CFEPLC +  +V  D SG             R C+HFL + CA  +   I   CP+CR  F++   VP P  +   WF + D D +G ++K +++  ++   P++   +++ +   W  WD + +G +   +    D L  F+++     R R    +P++ ++ A WF+ WD+D SG+LE+ E+VRALIK+  I       +D +     +IW + D D  G I   EF++ +GL ++++A +
Sbjct:   81 LHVSEDHQECGACFEPLCKERTAVFVDESGA------------RTCKHFLHERCARAVCEHIGSVCPICRTAFASARGVPFPTEDANEWFRLCDVDGNGKLDKEQVLTVIRAQIPVDWRKIDKDLGSLWARWDPESSGALGKAQLVGADGLLEFVSKKYPP-RLREYKHVPHVTDKRA-WFKFWDEDDSGTLEKDEVVRALIKTFGIKDDVAHIQD-VRSMVESIWCVFDLDDSGGIDLTEFLLEDGLGDSIMAAF 321
[Close]
BLAST of mRNA_D-herbacea_F_contig116.1202.1 vs. uniprot
Match: A0A7J6M912_PEROL (RING-type domain-containing protein n=1 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6M912_PEROL)

HSP 1 Score: 128 bits (322), Expect = 5.750e-30
Identity = 83/264 (31.44%), Postives = 129/264 (48.86%), Query Frame = 2 
Query:   92 LEIAAGFGECAVCFEPLCTKGASVMTDGSGQSAT-FFRAEQLPRRICRHFLCQECAPTIIPLRCPVCRREFSATFDVPDPLANPVRWFHIVDRDESGTIEKAELVDALKGMFPIEPGALEEIIEMNWDSWDADRNGTIDAEEF---RDRLAPFLAETLGNLR-ERIN---PDLPNLREQPAEWFRIWDKDASGSLERPEIVRALIKSI-------PGLSGRDEDWLLGTFAAIWSIIDPDKDGSITEAEFIMPEGLYETLLANY 838
            L +A  + ECAVC+  L      ++   S ++ + +F  E + R + ++      A       CP+CR +FS    +PD   +P  WF + D D  GT++K E++ AL  + P+E   L E IE NW  WD D +G+I   EF   R  L  +L      ++ E +N    D+P+L   P EWF  WD + +GSLER EIVRA++++        P      +   +  F  IW  +   + G +T  EF  P G+ + +  NY
Sbjct:  123 LSLAERYNECAVCYFELYRLPVGILRSQSKRACSHYFHTECIKRLVAKNAHEARNAGHAAVRECPICRAKFSDIKTLPDVFKDPRAWFQLCDIDCGGTLDKEEVLGALGAVLPVERDKLAEAIEENWVVWDPDNDGSITLTEFVEPRRGLREYLLRNFNVIKTENLNIRPDDIPDLDSHPLEWFNFWDGNGNGSLERSEIVRAIVRTFCVSPSGEPSFKRAFDLREMALF--IWDSLGYHEFGELTFEEFNAPFGVGDQIYHNY 384
[Close]
BLAST of mRNA_D-herbacea_F_contig116.1202.1 vs. uniprot
Match: C1MUQ4_MICPC (Predicted protein n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1MUQ4_MICPC)

HSP 1 Score: 125 bits (313), Expect = 2.640e-29
Identity = 87/320 (27.19%), Postives = 130/320 (40.62%), Query Frame = 2 
Query:   98 IAAGFGECAVCFEPLCTKGASVMTDGSGQSATFFRAEQLPRRICRHFLCQECAPTIIP--LRCPVCRREFSATFDVPDPLANPVRWFHIVDRDESGTIEKAELVDALKGMFPIEPGALEEIIEMNWDSWDADRNGTIDAEEFRDR--LAPFLAETLGNL------------------------------------------------------------------RERINPDLPNLREQPAEWFRIWDKDASGSLERPEIVRALIKSIPGLSGRDE----DWLLGTFAAIWSIIDPDKDGSITEAEFIMPEGLYETLLAN 835
            +A  FGECAVCFE LC          S  +A F  +E+   R+C HF   ECA  +     +CP CR  F+    VP P  NP  WF   D D  G + KAE+++ L+     +  A+E  +   W  WD + +G ++  E   R  L  +++++                                                                      R     ++P++   P  WF  WD D SG+L++ E+VRALIK+     GRD+      +     A W + DPD  GS+   EF+M +GL ET++A+
Sbjct:  107 VAEEFGECAVCFEALC----------SAPTAVFVASER--HRVCAHFFHVECAGELAKHDKKCPTCRASFARVLPVPSPRENPNGWFAACDVDGDGRLSKAEVLEVLRAQLKCDWRAIERELPTLWPQWDVNGDGYVERHEMMKRGGLLDYVSKSFAKAKSVDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXREERQKRAEAAHHSTSGSHGIHRDDDRRRRHRKREVPSIVNDPTAWFAFWDFDDSGALDKEEVVRALIKTFK--LGRDDVRKAQDMRAVVNATWGLFDPDGSGSVDRREFLMRDGLAETIVAS 412
[Close]
BLAST of mRNA_D-herbacea_F_contig116.1202.1 vs. uniprot
Match: A0A7J6NT57_PEROL (RING-type domain-containing protein n=1 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6NT57_PEROL)

HSP 1 Score: 127 bits (318), Expect = 3.620e-29
Identity = 82/264 (31.06%), Postives = 129/264 (48.86%), Query Frame = 2 
Query:   92 LEIAAGFGECAVCFEPLCTKGASVMTDGSGQSAT-FFRAEQLPRRICRHFLCQECAPTIIPLRCPVCRREFSATFDVPDPLANPVRWFHIVDRDESGTIEKAELVDALKGMFPIEPGALEEIIEMNWDSWDADRNGTIDAEEF---RDRLAPFLAETLGNLR-ERIN---PDLPNLREQPAEWFRIWDKDASGSLERPEIVRALIKSI-------PGLSGRDEDWLLGTFAAIWSIIDPDKDGSITEAEFIMPEGLYETLLANY 838
            L +A  + ECAVC+  L      ++   S ++ + +F  E + R + ++      A       CP+CR +FS    +PD   +P  WF + D D  G+++K E++ AL  + P+E   L E IE NW  WD D +G+I   EF   R  L  +L      ++ E +N    D+P+L   P EWF  WD + +GSLER EIVRA++++        P      +   +  F  IW  +   + G +T  EF  P G+ + +  NY
Sbjct:  140 LSLAERYNECAVCYFELYRLPVGILRSQSKRACSHYFHTECIKRLVAKNAHEARNAGHAAVRECPICRAKFSDIKTLPDVFKDPRAWFQLCDIDCGGSLDKEEVLGALGAVLPVERDKLAEAIEENWVVWDPDNDGSITLTEFVEPRRGLREYLLRNFNVIKTENLNIRPDDIPDLDSHPLEWFNFWDGNGNGSLERSEIVRAIVRTFCVSPSGEPSFKRAFDLREMALF--IWDSLGYHEFGELTFEEFNAPFGVGDQIYHNY 401
[Close]
BLAST of mRNA_D-herbacea_F_contig116.1202.1 vs. uniprot
Match: A0A7J6LQN2_PERCH (RING-type domain-containing protein n=1 Tax=Perkinsus chesapeaki TaxID=330153 RepID=A0A7J6LQN2_PERCH)

HSP 1 Score: 120 bits (302), Expect = 5.380e-27
Identity = 78/262 (29.77%), Postives = 123/262 (46.95%), Query Frame = 2 
Query:   92 LEIAAGFGECAVCFEPLCTKGASVMTDGSGQSAT-FFRAEQLPRRICRHFLCQECAPTIIPLRCPVCRREFSATFDVPDPLANPVRWFHIVDRDESGTIEKAELVDALKGMFPIEPGALEEIIEMNWDSWDADRNGTIDAEEF---RDRLAPFLAETLGNLRE---RINP-DLPNLREQPAEWFRIWDKDASGSLERPEIVRALIKSIPGLSGRDEDW-----LLGTFAAIWSIIDPDKDGSITEAEFIMPEGLYETLLANY 838
            L IA  F EC+VC+  L      ++   S ++   +F  E + R + ++      A       CP+C   FS    +PD   +P  WF + D D  GT+++ E++ AL  + P+    L   IE NW+ WD D +G I   EF   R  L  +L     N++     + P D+P+L   P  WF  WD + +GSLER E+VRA+IK+     G +  +     +      IW  +   + G +T  EF  P G+ + +  N+
Sbjct:  142 LSIAERFNECSVCYFELFRLPVGILRLQSRRACPHYFHTECIKRLVAKNASDARAAGYPSAQECPICGARFSEIKTLPDVFKDPRAWFQLCDIDSGGTLDQEEVLGALGAVLPVARDKLAVAIEDNWEVWDPDNDGVITLTEFVEPRRGLRQYLLRNFNNIKSDSVNLRPSDIPDLDSHPMAWFDFWDGNRNGSLERSEVVRAIIKTFCLNPGGEPSFARAFDIRELAMDIWDSLGYHEFGELTFEEFNAPFGVGDQIYHNF 403
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig116.1202.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L845_9PHAE3.940e-14673.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FYD8_ECTSI2.690e-5277.78RING-type domain-containing protein n=1 Tax=Ectoca... [more]
D7FYD7_ECTSI3.790e-4475.27Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
C1E6Q1_MICCC8.700e-4234.75Uncharacterized protein n=1 Tax=Micromonas commoda... [more]
A0A0G4H6Z1_9ALVE9.390e-3935.34Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
A4S2X8_OSTLU1.310e-3029.69Uncharacterized protein n=2 Tax=Ostreococcus sp. '... [more]
A0A7J6M912_PEROL5.750e-3031.44RING-type domain-containing protein n=1 Tax=Perkin... [more]
C1MUQ4_MICPC2.640e-2927.19Predicted protein n=1 Tax=Micromonas pusilla (stra... [more]
A0A7J6NT57_PEROL3.620e-2931.06RING-type domain-containing protein n=1 Tax=Perkin... [more]
A0A7J6LQN2_PERCH5.380e-2729.77RING-type domain-containing protein n=1 Tax=Perkin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig116contigD-herbacea_F_contig116:775471..782694 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
EggNOG OGs2BZS4@1,2S2K6@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons6
Taxonomic scopeEukaryota
Seed ortholog score159.5
Seed ortholog evalue2.2e-36
Seed eggNOG ortholog296587.XP_002502215.1
Model size878
Cds size774
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig116.1202.1prot_D-herbacea_F_contig116.1202.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig116 775547..782666 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927557.9216282-UTR-D-herbacea_F_contig116:775470..7755461622927557.9216282-UTR-D-herbacea_F_contig116:775470..775546Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig116 775471..775546 +
1690790231.612601-UTR-D-herbacea_F_contig116:775470..7755461690790231.612601-UTR-D-herbacea_F_contig116:775470..775546Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig116 775471..775546 +
1622927558.0239565-UTR-D-herbacea_F_contig116:782666..7826941622927558.0239565-UTR-D-herbacea_F_contig116:782666..782694Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig116 782667..782694 +
1690790231.6845698-UTR-D-herbacea_F_contig116:782666..7826941690790231.6845698-UTR-D-herbacea_F_contig116:782666..782694Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig116 782667..782694 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927557.940133-CDS-D-herbacea_F_contig116:775546..7757201622927557.940133-CDS-D-herbacea_F_contig116:775546..775720Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig116 775547..775720 +
1690790231.6227345-CDS-D-herbacea_F_contig116:775546..7757201690790231.6227345-CDS-D-herbacea_F_contig116:775546..775720Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig116 775547..775720 +
1622927557.9528444-CDS-D-herbacea_F_contig116:780124..7802471622927557.9528444-CDS-D-herbacea_F_contig116:780124..780247Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig116 780125..780247 +
1690790231.632828-CDS-D-herbacea_F_contig116:780124..7802471690790231.632828-CDS-D-herbacea_F_contig116:780124..780247Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig116 780125..780247 +
1622927557.9682386-CDS-D-herbacea_F_contig116:780767..7808971622927557.9682386-CDS-D-herbacea_F_contig116:780767..780897Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig116 780768..780897 +
1690790231.646722-CDS-D-herbacea_F_contig116:780767..7808971690790231.646722-CDS-D-herbacea_F_contig116:780767..780897Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig116 780768..780897 +
1622927557.9821005-CDS-D-herbacea_F_contig116:781525..7816561622927557.9821005-CDS-D-herbacea_F_contig116:781525..781656Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig116 781526..781656 +
1690790231.6571178-CDS-D-herbacea_F_contig116:781525..7816561690790231.6571178-CDS-D-herbacea_F_contig116:781525..781656Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig116 781526..781656 +
1622927557.9993498-CDS-D-herbacea_F_contig116:781986..7821251622927557.9993498-CDS-D-herbacea_F_contig116:781986..782125Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig116 781987..782125 +
1690790231.6668432-CDS-D-herbacea_F_contig116:781986..7821251690790231.6668432-CDS-D-herbacea_F_contig116:781986..782125Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig116 781987..782125 +
1622927558.012161-CDS-D-herbacea_F_contig116:782589..7826661622927558.012161-CDS-D-herbacea_F_contig116:782589..782666Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig116 782590..782666 +
1690790231.6759737-CDS-D-herbacea_F_contig116:782589..7826661690790231.6759737-CDS-D-herbacea_F_contig116:782589..782666Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig116 782590..782666 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig116.1202.1

>prot_D-herbacea_F_contig116.1202.1 ID=prot_D-herbacea_F_contig116.1202.1|Name=mRNA_D-herbacea_F_contig116.1202.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=258bp
MSAMDLEIAAGFGECAVCFEPLCTKGASVMTDGSGQSATFFRAEQLPRRI
CRHFLCQECAPTIIPLRCPVCRREFSATFDVPDPLANPVRWFHIVDRDES
GTIEKAELVDALKGMFPIEPGALEEIIEMNWDSWDADRNGTIDAEEFRDR
LAPFLAETLGNLRERINPDLPNLREQPAEWFRIWDKDASGSLERPEIVRA
LIKSIPGLSGRDEDWLLGTFAAIWSIIDPDKDGSITEAEFIMPEGLYETL
LANYNFS*
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mRNA from alignment at D-herbacea_F_contig116:775471..782694+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig116.1202.1 ID=mRNA_D-herbacea_F_contig116.1202.1|Name=mRNA_D-herbacea_F_contig116.1202.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=7224bp|location=Sequence derived from alignment at D-herbacea_F_contig116:775471..782694+ (Desmarestia herbacea DmunF female)
GTCGTCGTATCGACAGAGTGCACGTATCTATCTGATAGCTGATAGAAAAA
AAAACACCATCAGATATCCGTCCTGCATGTCGGCCATGGACCTGGAGATC
GCCGCAGGGTTCGGAGAGTGTGCGGTATGCTTTGAGCCTCTGTGCACGAA
GGGGGCGTCGGTTATGACGGATGGGTCCGGACAGAGTGCAACGTTTTTCA
GGGCCGAGCAACTACCCCGTCGTATCTGCCGGCATTTTTTGTGCCAAGAG
GCAAGTTAGCTCACTGACAGCGAACCGACCCCAGTCGAACTCTGACGAAA
GCGTCGTGGTTGTGCTCTGCGAGCTCTAGCGTTTGCCTTGTTAGACAATA
ATACTTTGTACTTACGATACGGTTGCACTTGGCGATATTTTGCTACTCTA
CTGTTTTTTGGGTGAGAGGATTGCTACTACTACTATTGTCATACTGCATG
TCTGCGACTGCACCAGGCTGCCTGTCTGCTGTACAAGTACTCTCTCGGTG
TAGTATGTTGCGCTCTTCTGTGTTGGCGTCATCATACTATCACAGTTGAG
ACATGCGAGTGCAGCAGCTTTGCTATATAGGACTAACCGCTTTTTGTTGT
TTACTGTTTGTCTCCGCCCCTTCCACGTGCCCGGTTTACGTACTCACCAC
TACAGACAGTACAGTAGTAGTCAGTAGTCAGTACAGAAGTATTGATCACC
GCCTTCTGTTTTCTGTTCCAGATTGTTGTTGTGCATCGACGTACCATGTA
TTGTGTGTGCATGTTTTGATGCCAAGGTACACACCAGCTCTATGAATGAT
ACGTGTACTCTTCTGTTGGTTGTTCAACTGCTGTTGTACTACTACTGTCT
GTCAATGCTGTATCTGTACGACATACCACAGACTTGAATGAGTACATTGA
ACCGTCTCACCGATAATTGCACTTGTTTTTATAGGTTTTCTTTATTTTAT
ATTTCCTGAAGAAAACAAAGAATGGCACCGGCCACTCCATCGCCCGGAGA
AATACAAAAATAAACAAATTCGAAGTATCCCGTTGAGCTTGCTGGGCCTA
TTTCATCCATGGGATGTACTGCTCTATTCCCCGAGGATCGAGGTAGACTA
CTGTACGATAATAGAATACTTCGCGACCGAAGTACGAGTATCACGCAACA
GCAGGCAGTGAACTTGACGATATTCCCCTGGCCCCGGAACCAGTTTGGAA
CCTCATGGCTGATGAATTTGTAATCAAAATTTAAAATTAATAAGAAAATT
GTGCTCGTACCAGGCACAACGTTTGAACAGACAAGCCACACACAAACAGG
CAACTACTGTCGACTGTGTTACTTGTATTGTAGTGCGGCGCCCAAAAGTG
GATTGCCCTCATATGATACCTCATACCTCACATGTCCTGTACGAGTAGAG
CTTGGGGTGGTTGCACAGCGGAGCCAGTGCGTTATACCTTATCTGAGCAA
CGATCGTAGGTTCCGCGCGACCAAAGGATCACACAGTCACACAGTTTTAT
TGTCGTAGTTTTATAGCTTTGCCTCTCCTGTCCCCCTTGCGTCTTTGTGT
GCTTAATTTACTGCTTAAATTTACTCCTGAGTGTACGGCGGTACCTCCCT
CTTACTGTACAACCGTGCGCCCCCCCCTATAGACCCTTGCGTGTATCCAT
GGCAAGATCCACAGAGGAAGGGGGGCAGCAGCTCTACATGTAGCTGTTGG
TGTAGCTGACAATCGGATATATCCCATTTTCGACTTTTCTTGTGGTCCTT
TTTTGGTTTTCATTGTTGTTGACTTACTTTATTTCGAGTCTGTGAATTAT
TTGGTGTTTTTTTCTCTGGCGAAAGGGTCCGCCCTCCTTGGGCACTGCTC
TTTCTCATGTGTATATTTTTTGCTTTATTTTGCTTTGTTCTTGCTTCTGG
AGCGATATTGTGCCGGGTTTTGTGACCACGGGCAAGATATTTTGAGATGA
GCTAATGGGAGAAACAACAACAACAACAACAACAACAGTACAGCAGTACT
ATTATTGGTGAAGTTGATGAATTCCCCCTGGCCCCCGAACCAGTTTGTAG
TGAGTGATGACACGGCTTATGTGTTGGTAATAAAAAAGGGCCGGTTATAA
CGGGCAAAAAAAGTCACGAATCATCAAAAAAAGTCTGGTTTCCTAACTTT
TGGAAATCTTTTGTTTGCCAAAATAGCCCTGTTTGAAAGTTACGAATGGT
GATTTTTTTCGAAAGATTTTTTCAATCCGCTTCAAGATCACAATTGTGGA
CTTTTTTTTTCTAGAATTGTGACTTTGTTTTTTGCCATAGTTGTTTTTTG
TCACGATTGTTAGAACCGACAATATGCCTACATAGGCTCTTACGCGGGAC
GTCTCGGGGTGTGCCTACAAATTCGGTAACAAATGCTAAATCAACTACCG
TACTGTCTGTGAAAAACGCCGGCATATGTCTCCGGGAGAAGCCATCCGCC
ATCCCTAGCTGACACACTTCTGCTGCTGTCATGTACTGGCATTGTATAGT
TTTTTTTTTTCATAGTACTGTATTGATAACGTGTGCAATGGAGGACAGAC
TCTGGGTACAGCACACGGCCCAAAAACCACTATCATACGTTCTGTACGTA
CTGTGGTCGCGACAGATGTTTGCTATTTATACTGCAGGTTGATGGACTGC
CGGGCTCTGCGATCGTAGAGTGCTACCAGTACAGTAGTCCTAACCTAGTA
CTGTTAGCCAATGCAGCAGTAGACAGGCATGACCCAATGGTCTAGTGGTT
AGGATGTTCGCCTCTGTTGGCGGAAGTTGGGGGTTCGATTCCCGGTGGCA
CTTTTCTGTGCCATCTTCCGTCGCGGAAAACGCAACAGCGTGAGTAAGCA
CAATTCGATGAAGTCGACGAGGGAAGAAAGTGCTGCACTCTTCTCGCGAC
AAAAATGTAGGCACGTACCGTCGTGGGAAGACGGGAGGAGCGCCTGCTAT
GTGACCCCGGATCTGAGTTACGAAGAAAGATGGAGCTAGAGAAAGAATAG
GGGGAAGATAATAAATGGGACGATACAAAAAGAAAAACAATAGTGCTTAC
CAGTTATAGACGAAAACCCCATAGAAACTCTATACGAAGTATCAACAACC
TCAACGAGCTTCCCAACCTCACAGGCTCGATACAAGAATGCCACAGAGAA
AAAAGCAAGTGTCCTCGATTTCAGCGCCGAAGGCGTAGATTTTGGCCCCG
CCGTAGTCGTAGTCGTATGGTGGGTGATTGGAGTTGAGGGTTAGGGTCGG
GTTGGGTCTGCTCGGCACGCATTGAAATCAACAAAAAGAAGGTGTGTCAA
CCATAGTTTTCGTCTAATTTAACGGGTAAACGTCCCTCGGCCGATTGGCC
CCTATCGGGGCGTTTGGCCACAAGCTATTACAGAATATAGGCGTACGTCG
TGGTGTGCTGACCTTGACCTGGAAAAGCGATGCAACCGGCCTGGACTACA
AGCAACCCTGACTACGTACTACGCAGCCTCAACAAATCAGGGAGTCTCAA
AATTTATTGGGCTGGCTGTATTTGTGCTATATATTGCCTGTTTTTTTTAT
TGCTTTTTTGTTTATTTTTTCTATCTCGTTTGCCGCTTGTTTGGTTTGGC
TTGGCATATCTTGATTTCGTGGTTTGATACTTGATCTGATTCCATCTTGA
TTCCATTTTGATTTCTGTTTGTGTTCCCCTCAGAAAGGCTATTATAGTAG
TCTAGTACACAAGATGATATTGAGGCCCAAATTACCCCCTCTCGCCATTA
TCCTGTTGAAACCGGGCCAACCCAGGCGAGTCACTACGCTGTAGCTCATC
TGAGGACCGATAGAATCCGCGCGACCGAAGTATCACACAGCGAGATTGAC
GATTATCCCCTGGCCCCCGAACCAGTTTGGAAGGTCGCAGCTGATGTATT
TGTAAACAAAAAATAACAATATAGAATGATAAGTAATATCCTGTAGAGCC
TGGGACGACCCAGGGAAGTCACTGCATTATACCTTATCTGAGGACCGATA
GACTCCGCGCGACTGATGTATCATACAGTGAGGTTGATGATTTATCCCCT
GACCCCCGAACCAGTTTGGAACGTCACGGCTGATGTATTTGTAAGTATAA
ATAATATATCTACGGGTACAAACGTACTCGTACAAGTATTCATGTAGATC
ATAGAGGTGTCAACAACTGTATTACTAATTTTACGGCTTGCTGGACTGCT
GCCTGTCTCTTGATTGTGTTATTTTATTTATATTGTCGATTTGTTTGCCG
CCGTGGACAAGTACAAGACACAATTAATAGTACGTGTCGTACAAATAATT
TTTACTATTTATTCCGGACAAGCGCGTGTTAGCCCTCAGGCTGACCGTAT
GACTTCCCGGATCATGTTTGTTCCAATTGTGGCCGTCCCAGCTGTTGCTT
CGTTTTTCAACCATGAGTTAATACGATATCGTGCTACTTGTATTGTGTAG
AATCGCGCTCATTTCTGTCGTTGCGGGTCGTGTCATTTGTTTGATGGGTT
CGACTTCCCTGCCAACTTGTCACCCCCCATGTCTCTCCTCGCGTGCCGCG
CTCTTGATGTTGCTTCACTTTTGTGCTTGCGTTCGTTGGATTGTTGTATG
ATGCCTGGGTGTGTTTTTTTGTGCGTGTTTGTTTGTGTGCTGTTGCTTTT
ACAGTGCGCACCGACGATCATCCCGTTGAGGTGCCCGGTGTGCCGGCGGG
AGTTCAGTGCGACCTTTGATGTACCCGACCCTTTGGCCAATCCCGTGCGA
TGGTTCCACATCGTTGACCGTGATGAGGTGAGCCTGTACCACGGTTCTAT
AGTGTAAACTCCCCTCCCGCAATACTGCCGCACATTGCGAGAGTTGTCGT
TTATTATACGAGTGCAAGGCATGTTCTCGGGAGCTTGTTGCAAGACGAAA
CATGTTATCTTCGACGGTACGAGGTATACAGTGCAAGCATCGGAGAAGTG
TTCTTGCGTAGAACTCGATGTGTGGAAAGGGATGAGATGGACAAAGTGGA
ATGTGGACAAATAAAAGAAGGAGCAGGGCCGGCATCGAGAAGGTACACGG
CAGCACAGCGCACGTGCTGTCATGCGTACCACGCTCCAAGTCGCAATGTG
TAGGTCCTTCGATGTACACGAAATCTAAATGTTATCGAGAGGTACCAGTA
TATGACGGCCAGGGTTTCTCCGAAGGCGTTCGTTTATCGTCACTGGCTGT
TCCCTTTCTTGATCCAAATGCTTCTTCTTGCTGTCCCCCCCCCCCCCCCC
CTTCCCCTTACTCGAACCCATTTCACGATTGTGTTATTCATTGAAAGAGC
GGCACAATCGAGAAGGCGGAGCTCGTGGATGCACTAAAGGGCATGTTCCC
TATCGAGCCGGGAGCGCTTGAAGAAATCATAGAGATGAACTGGGACAGCT
GGGACGCCGACAGGAATGGGACGATAGGTGACCGCAACGTTCAGAGCTTG
CTCTCCGCAGCTTTGTACATTGTTATAGCAGTAGTGGCTATTCCCATGAA
AATGATGTTGCATTGGTGTGGATTTTTTCATGACGGACGCCGACAGGAAT
GGGACGCTAGGTGACCGCAACGTTCAGAGCTTGCTCTCCCCAGCTTTGTA
CATTGTTATAGCAGTAGTGGCTATTCCCATGAAAATGATGTTGCATTGGT
GTGGATTTTTTCATGACGCTTGATCAACGGGAAAAAAAGCGACGGCCGAG
AGAACGCGTGTGCGAAGGATTTAGGGTGCGCGATTGGTTGCGCTGTACGT
GGACAAAATTCTTCCAGCGTGCGTTGCCGCTTGATTTTTGGTTTGTTTTA
GTTGCCATCGCTCGATAGCCGATTGTGAGTCATCGTCTGGAGACCCGGCC
ATCGGGGGAGAGTTTTGAAAAAGCGCTGGCGTCAGGTGTTACAGCACCAT
GTCCTTCTTAAGTCAGGCACCCTTTTTCAATTCCTTCGAGGAAGTTAGTG
CCTCAGCGCACAGCGCACCCACGACGATCGTGGCTGGTAAAGTCCGGTGA
TCGACTCCCGCCCTCCACCTGACACCGACGCCGCTGTTACCTTTTGTTTT
TACAGACGCGGAGGAGTTTCGAGACCGTCTCGCACCGTTCCTTGCCGAAA
CGCTGGGGAACTTGAGGGAGAGGATTAATCCGGATCTTCCGAACCTGAGG
GAACAACCAGCGGAGTGGTTCAGAATTTGGGACAAGGTGAGACGACCGCA
GGGGGGGGGGGGGTACGGTACTTGTAGGTGTGGCGGGGAAAGTGCAACCC
ACTTGTGCGTTTTTTGGCTTATTTTTATTACGTTTTGCCGGGGGGGACTG
AGAATAGAATTATGAACGTTGTTTTGGAGATTGTGGGGGGTTGACGTACG
GGGTGAAGCGCTGTGGATCATGTTTTGTGTGTACTTCAGAGTATACAGTT
GACGACTCGAAATGTTGTTGCCCTGCTGTTTTACCAGCCCGAACACTCTC
TTGTCTGTCGTTGCAATTCTTGCATCTTTTTGGGAAAATACATATCATCC
TCTTGCGCTTGAGCAGGATGCATCGGGGTCGCTGGAGCGGCCAGAGATCG
TGCGCGCCTTGATCAAGTCCATCCCGGGATTGAGTGGCCGCGATGAGGAC
TGGCTGCTGGGGACGTTCGCGGCGATTTGGTCCATCATTGACCCGGACAA
AGACGGTGAGACACGCTGTGCAGATATAATGGTGTCGAGGGGCATAGTGA
ACGCGCGGAAACGTTTTACTATCGCTACGTATTCGTGCGCGGGATTGTTT
TTCCCCCAATCTGAGCGTATTGTAGGAAGCGGTCAGGTCCCTTAGTCGAG
TCAACTGTTTTTGCTCTATCATAAGCGATCTTTGCTTCGGTGTATATCGA
GAACATAGGCGCTCCGGGTATCGCGTATCATCCGCCTCCCGTCTCTTTTG
TGCGTGAGATTTTGGAGCAGGAATACCAGTTTTTTTTGTCGTAGGCAACG
CCCCTAGCCCGTGCTCGTGCCCCGCTGGAATTTGCATTAATTCGCATGCG
ACGGCTTCGTCGATTCGATATGTAGCCAGACGCCCCACCGCGATCCCGAC
AGGGTTAATTTTGTGGGTACTACTGACGGTTACGTTTTCCCGTAAACCCC
CCCTTGCAATATCTGGAAGGGTCGATCACGGAGGCGGAATTCATCATGCC
AGAAGGTTTGTATGAAACCCTCCTCGCTAACTACAACTTCTCGTGACGCA
TGTAGCTGGGCGCGGCGGACGGGG
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Coding sequence (CDS) from alignment at D-herbacea_F_contig116:775471..782694+

>mRNA_D-herbacea_F_contig116.1202.1 ID=mRNA_D-herbacea_F_contig116.1202.1|Name=mRNA_D-herbacea_F_contig116.1202.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=1548bp|location=Sequence derived from alignment at D-herbacea_F_contig116:775471..782694+ (Desmarestia herbacea DmunF female)
ATGTCGGCCATGGACCTGGAGATCGCCGCAGGGTTCGGAGAGTGTGCGGT
ATGCTTTGAGCCTCTGTGCACGAAGGGGGCGTCGGTTATGACGGATGGGT
CCGGACAGAGTGCAACGTTTTTCAGGGCCGAGCAACTACCCCGTCGTATC
TGCCGGCATTTTTTGTGCCAAGAGATGTCGGCCATGGACCTGGAGATCGC
CGCAGGGTTCGGAGAGTGTGCGGTATGCTTTGAGCCTCTGTGCACGAAGG
GGGCGTCGGTTATGACGGATGGGTCCGGACAGAGTGCAACGTTTTTCAGG
GCCGAGCAACTACCCCGTCGTATCTGCCGGCATTTTTTGTGCCAAGAGTG
CGCACCGACGATCATCCCGTTGAGGTGCCCGGTGTGCCGGCGGGAGTTCA
GTGCGACCTTTGATGTACCCGACCCTTTGGCCAATCCCGTGCGATGGTTC
CACATCGTTGACCGTGATGAGTGCGCACCGACGATCATCCCGTTGAGGTG
CCCGGTGTGCCGGCGGGAGTTCAGTGCGACCTTTGATGTACCCGACCCTT
TGGCCAATCCCGTGCGATGGTTCCACATCGTTGACCGTGATGAGAGCGGC
ACAATCGAGAAGGCGGAGCTCGTGGATGCACTAAAGGGCATGTTCCCTAT
CGAGCCGGGAGCGCTTGAAGAAATCATAGAGATGAACTGGGACAGCTGGG
ACGCCGACAGGAATGGGACGATAGAGCGGCACAATCGAGAAGGCGGAGCT
CGTGGATGCACTAAAGGGCATGTTCCCTATCGAGCCGGGAGCGCTTGAAG
AAATCATAGAGATGAACTGGGACAGCTGGGACGCCGACAGGAATGGGACG
ATAGACGCGGAGGAGTTTCGAGACCGTCTCGCACCGTTCCTTGCCGAAAC
GCTGGGGAACTTGAGGGAGAGGATTAATCCGGATCTTCCGAACCTGAGGG
AACAACCAGCGGAGTGGTTCAGAATTTGGGACAAGACGCGGAGGAGTTTC
GAGACCGTCTCGCACCGTTCCTTGCCGAAACGCTGGGGAACTTGAGGGAG
AGGATTAATCCGGATCTTCCGAACCTGAGGGAACAACCAGCGGAGTGGTT
CAGAATTTGGGACAAGGATGCATCGGGGTCGCTGGAGCGGCCAGAGATCG
TGCGCGCCTTGATCAAGTCCATCCCGGGATTGAGTGGCCGCGATGAGGAC
TGGCTGCTGGGGACGTTCGCGGCGATTTGGTCCATCATTGACCCGGACAA
AGACGGATGCATCGGGGTCGCTGGAGCGGCCAGAGATCGTGCGCGCCTTG
ATCAAGTCCATCCCGGGATTGAGTGGCCGCGATGAGGACTGGCTGCTGGG
GACGTTCGCGGCGATTTGGTCCATCATTGACCCGGACAAAGACGGGTCGA
TCACGGAGGCGGAATTCATCATGCCAGAAGGTTTGTATGAAACCCTCCTC
GCTAACTACAACTTCTCGTGAGGTCGATCACGGAGGCGGAATTCATCATG
CCAGAAGGTTTGTATGAAACCCTCCTCGCTAACTACAACTTCTCGTGA
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