mRNA_D-herbacea_F_contig116.1192.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig116.1192.1
Unique NamemRNA_D-herbacea_F_contig116.1192.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
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BLAST of mRNA_D-herbacea_F_contig116.1192.1 vs. uniprot
Match: D7FYF0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYF0_ECTSI)

HSP 1 Score: 63.5 bits (153), Expect = 2.440e-10
Identity = 35/53 (66.04%), Postives = 36/53 (67.92%), Query Frame = 1 
Query:   10 HPASGRPRPAPRPLPVAALGPERLGAAVDVIVGHLRRLALQQAWDKWQPTLTQ 168
             P SGR +  P P    A GP RLGAAVD IVGHLRRL L QAW KWQP LTQ
Sbjct:    8 QPPSGRRQLRPGP-EAPAPGPARLGAAVDAIVGHLRRLVLLQAWAKWQPKLTQ 59
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BLAST of mRNA_D-herbacea_F_contig116.1192.1 vs. uniprot
Match: A0A6H5KA79_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA79_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 8.540e-10
Identity = 33/43 (76.74%), Postives = 33/43 (76.74%), Query Frame = 1 
Query:   43 RPLPVA-ALGPERLGAAVDVIVGHLRRLALQQAWDKWQPTLTQ 168
            RP P A A GP RLGAAVD IVGHLRRL L QAW KWQP LTQ
Sbjct:   16 RPGPEAPAPGPVRLGAAVDAIVGHLRRLVLLQAWAKWQPKLTQ 58
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig116.1192.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FYF0_ECTSI2.440e-1066.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KA79_9PHAE8.540e-1076.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig116contigD-herbacea_F_contig116:636339..636509 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size173
Cds size171
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927556.7268054-CDS-D-herbacea_F_contig116:636338..6365091622927556.7268054-CDS-D-herbacea_F_contig116:636338..636509Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig116 636339..636509 -
1690790230.9371579-CDS-D-herbacea_F_contig116:636338..6365091690790230.9371579-CDS-D-herbacea_F_contig116:636338..636509Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig116 636339..636509 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig116.1192.1prot_D-herbacea_F_contig116.1192.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig116 636339..636509 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig116.1192.1

>prot_D-herbacea_F_contig116.1192.1 ID=prot_D-herbacea_F_contig116.1192.1|Name=mRNA_D-herbacea_F_contig116.1192.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=57bp
MLQHPASGRPRPAPRPLPVAALGPERLGAAVDVIVGHLRRLALQQAWDKW
QPTLTQA
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mRNA from alignment at D-herbacea_F_contig116:636339..636509-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig116.1192.1 ID=mRNA_D-herbacea_F_contig116.1192.1|Name=mRNA_D-herbacea_F_contig116.1192.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=171bp|location=Sequence derived from alignment at D-herbacea_F_contig116:636339..636509- (Desmarestia herbacea DmunF female)
ATGCTTCAGCATCCCGCGAGCGGAAGGCCTCGGCCAGCCCCGCGGCCGTT
GCCGGTAGCGGCTCTCGGTCCCGAACGCCTCGGCGCCGCGGTGGACGTTA
TCGTTGGCCACCTGCGCAGGCTTGCTCTTCAGCAGGCGTGGGACAAGTGG
CAGCCTACGCTGACTCAGGCA
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Coding sequence (CDS) from alignment at D-herbacea_F_contig116:636339..636509-

>mRNA_D-herbacea_F_contig116.1192.1 ID=mRNA_D-herbacea_F_contig116.1192.1|Name=mRNA_D-herbacea_F_contig116.1192.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=342bp|location=Sequence derived from alignment at D-herbacea_F_contig116:636339..636509- (Desmarestia herbacea DmunF female)
ATGCTTCAGCATCCCGCGAGCGGAAGGCCTCGGCCAGCCCCGCGGCCGTT
GCCGGTAGCGGCTCTCGGTCCCGAACGCCTCGGCGCCGCGGTGGACGTTA
TCGTTGGCCACCTGCGCAGGCTTGCTCTTCAGCAGGCGTGGGACAAGTGG
CAGCCTACGCTGACTCAGGCAATGCTTCAGCATCCCGCGAGCGGAAGGCC
TCGGCCAGCCCCGCGGCCGTTGCCGGTAGCGGCTCTCGGTCCCGAACGCC
TCGGCGCCGCGGTGGACGTTATCGTTGGCCACCTGCGCAGGCTTGCTCTT
CAGCAGGCGTGGGACAAGTGGCAGCCTACGCTGACTCAGGCA
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