mRNA_D-herbacea_F_contig116.1187.1 (mRNA) Desmarestia herbacea DmunF female
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Overview
Homology
BLAST of mRNA_D-herbacea_F_contig116.1187.1 vs. uniprot
Match: D7FRV8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRV8_ECTSI) HSP 1 Score: 166 bits (419), Expect = 1.180e-47 Identity = 80/128 (62.50%), Postives = 97/128 (75.78%), Query Frame = 1
Query: 64 AGSLVVHIRSGDIFDPEDQGRVRQGFGQPPLQFYLLAIASRSWSDVTIITSANSQVATNPTFAALELMASTGALGPNVSAFKDRSLLTDLRAMLCADGLAVARSSLHFLTFAHSRATRFFVPNACGPG 447
AGSLV HIRSGDIF+P+ +G RQGFGQPPLQ+YL +A++ W +VT +T+A A NPTF LE+MA G LG NV F +R+LLTD++ MLCAD LA +RSS+ FLTFAHSRAT FFVP CG G
Sbjct: 114 AGSLVAHIRSGDIFNPDGEGHRRQGFGQPPLQYYLRVLAAKDWDNVTFLTAAWEDRALNPTFLTLEMMADAGVLGENVHLFNNRTLLTDMKEMLCADALATSRSSMSFLTFAHSRATTFFVPTPCGNG 241
BLAST of mRNA_D-herbacea_F_contig116.1187.1 vs. uniprot
Match: D7FRV9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRV9_ECTSI) HSP 1 Score: 164 bits (414), Expect = 8.710e-46 Identity = 81/128 (63.28%), Postives = 97/128 (75.78%), Query Frame = 1
Query: 64 AGSLVVHIRSGDIFDPEDQGRVRQGFGQPPLQFYLLAIASRSWSDVTIITSANSQVATNPTFAALELMASTGALGPNVSAFKDRSLLTDLRAMLCADGLAVARSSLHFLTFAHSRATRFFVPNACGPG 447
AGSLVVHIRSGDIF+P ++GR R FGQPPLQ+YL + + W +VT +T+A +Q A NPTF+ LE+MA G LG NV K+RSLL D+R MLCAD LA +RSS+ FLTFAHSRAT FFVP CG G
Sbjct: 250 AGSLVVHIRSGDIFNPNEEGRRRTEFGQPPLQYYLHVLGEKDWDNVTFLTAAWNQKAINPTFSILEVMAKAGTLGDNVRLLKNRSLLEDVREMLCADALATSRSSMSFLTFAHSRATTFFVPTPCGNG 377
BLAST of mRNA_D-herbacea_F_contig116.1187.1 vs. uniprot
Match: A0A6H5L0Z0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0Z0_9PHAE) HSP 1 Score: 120 bits (300), Expect = 2.150e-29 Identity = 63/126 (50.00%), Postives = 82/126 (65.08%), Query Frame = 1
Query: 70 SLVVHIRSGDIFDPEDQGRVRQGFGQPPLQFYLLAIASRSWSDVTIITSANSQVATNPTFAALELMASTGALGPNVSAFKDRSLLTDLRAMLCADGLAVARSSLHFLTFAHSRATRFFVPNACGPG 447
SLVVH+RSGDIF PE +GQPPLQFYL I SR WS+++++T+A Q NPTF L+ + G LG + + DR L TDLR MLCA+ + +A+SS+ L HSRA RFF+P +C G
Sbjct: 238 SLVVHMRSGDIFSPELSDI--PWYGQPPLQFYLKVIGSRPWSNISVLTNARIQREFNPTFGVLQELDKQGLLGAPANFYADRDLYTDLRDMLCAENVVLAKSSITRLLVRHSRAKRFFLPTSCARG 361
BLAST of mRNA_D-herbacea_F_contig116.1187.1 vs. uniprot
Match: A0A6H5L7B0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7B0_9PHAE) HSP 1 Score: 119 bits (298), Expect = 4.440e-29 Identity = 64/127 (50.39%), Postives = 82/127 (64.57%), Query Frame = 1
Query: 64 AGSLVVHIRSGDIFDPEDQGRVRQGFGQPPLQFYLLAIASRSWSDVTIITSANSQVATNPTFAALELMASTGALGPNVSAFKDRSLLTDLRAMLCADGLAVARSSLHFLTFAHSRATRFFVPNACGP 444
AGSLVVH+RSGDIF P G + +GQPPL +YL IAS+ W+ ++ +TS + NP + +E + S G LG NV KDR L DL+AMLCAD LA++ S+ L AHSRA RFF+P C P
Sbjct: 239 AGSLVVHVRSGDIFKP---GTIYHQYGQPPLLYYLAVIASKPWNKMSFVTSGEDDLL-NPAYRVIEGINSQGLLGTNVEMHKDRPLWEDLQAMLCADSLALSHSTFTNLLLAHSRAKRFFLPWGCEP 361
BLAST of mRNA_D-herbacea_F_contig116.1187.1 vs. uniprot
Match: D7FSJ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSJ7_ECTSI) HSP 1 Score: 114 bits (285), Expect = 1.240e-27 Identity = 65/130 (50.00%), Postives = 80/130 (61.54%), Query Frame = 1
Query: 64 AGSLVVHIRSGDIFDPEDQGRVRQGFGQPPLQFYLLAIASRSWSDVTIITSANSQVATNPTFAALELMASTGALGPN---VSAFKDRSLLTDLRAMLCADGLAVARSSLHFLTFAHSRATRFFVPNACGP 444
A SLV H RSGD+F P Q +GQPPL + L IAS+ WS++T IT+ + NPTF +E + S G LG N V +K RSL DL+AMLCAD L+VA S+L L AHSRA FF+P C P
Sbjct: 161 ARSLVFHFRSGDVFKPRKDFHF-QTYGQPPLLYVLAVIASKKWSNLTFITNGEHERLLNPTFRVIEELISQGILGTNGTIVETYKKRSLWEDLQAMLCADALSVAHSTLTNLLLAHSRAKMFFLPWGCEP 289
BLAST of mRNA_D-herbacea_F_contig116.1187.1 vs. uniprot
Match: D8LSV7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSV7_ECTSI) HSP 1 Score: 97.1 bits (240), Expect = 2.560e-22 Identity = 49/105 (46.67%), Postives = 68/105 (64.76%), Query Frame = 1
Query: 133 QGFGQPPLQFYLLAIASRSWSDVTIITSANSQVATNPTFAALELMASTGALGPNVSAFKDRSLLTDLRAMLCADGLAVARSSLHFLTFAHSRATRFFVPNACGPG 447
+G +PPLQFYL I SR WS+++++T+A Q NPTF L+ + G LG + + DR L TDLR MLCA+ + +A+SS+ L HSRA RFF+P +C G
Sbjct: 35 RGPQKPPLQFYLKVIGSRPWSNISVLTNARIQREFNPTFGVLQELDKQGLLGAPANFYPDRDLYTDLRDMLCAENVVLAKSSITRLLVRHSRAKRFFLPTSCARG 139
BLAST of mRNA_D-herbacea_F_contig116.1187.1 vs. uniprot
Match: A0A6H5K2F3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K2F3_9PHAE) HSP 1 Score: 100 bits (250), Expect = 5.140e-22 Identity = 55/124 (44.35%), Postives = 74/124 (59.68%), Query Frame = 1
Query: 67 GSLVVHIRSGDIFDPEDQGRVRQGFGQPPLQFYLLAIASRSWSDVTIITSANSQVATNPTFAALELMASTGALGPNVSAFKDRSLLTDLRAMLCADGLAVARSSLHFLTFAHSRATRFFVPNAC 438
G+LV+H+RSGDIF +V +GQPPLQFYL I W V I+T++ NP AL+ M G L +V +R++ DL +M CADGLA+ARS+L LT HS+A R + P+ C
Sbjct: 352 GNLVLHVRSGDIFSD----KVLAYYGQPPLQFYLQVIQHADWDSVDIVTNSQEHDGLNPVIPALQAMVDAGDLPDSVHVHTNRTMEEDLLSMFCADGLALARSTLVSLTGFHSKAKRVYGPHQC 471
BLAST of mRNA_D-herbacea_F_contig116.1187.1 vs. uniprot
Match: D7G2M2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2M2_ECTSI) HSP 1 Score: 93.2 bits (230), Expect = 2.700e-19 Identity = 55/129 (42.64%), Postives = 75/129 (58.14%), Query Frame = 1
Query: 64 AGSLVVHIRSGDIF-DPEDQGRVRQGFGQPPLQFYLLAIASRSWSDVTIITSANSQVAT--NPTFAALELMASTGALGPNVSAFKDRSLLTDLRAMLCADG-LAVARSSLHFLTFAHSRATRFFVPNAC 438
A +LV+H+RSGDIF DP G+GQPPLQ+Y+ AI + W V I+T+ ++ NP ALE+M + G L N+ KDR++ D +M+C G L ARSSL L HS A+R + P C
Sbjct: 316 ANTLVIHVRSGDIFVDP-----AAPGYGQPPLQYYVRAIKHQKWDRVDIVTNGRTKKMNVMNPVIPALEVMFAEGELTGNIYFHKDRTMEEDFLSMMCVGGGLVTARSSLSLLLAHHSSASRLYFPRPC 439
BLAST of mRNA_D-herbacea_F_contig116.1187.1 vs. uniprot
Match: A0A6H5JZ49_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ49_9PHAE) HSP 1 Score: 67.0 bits (162), Expect = 1.010e-10 Identity = 40/80 (50.00%), Postives = 51/80 (63.75%), Query Frame = 1
Query: 67 GSLVVHIRSGDIFDPEDQG-RVRQGFGQPPLQFYLLAIASRSWSDVTIITSANSQV-ATNPTFAALELMASTGALGPNVS 300
G+LV+HIRSGDIF PE +G +GQPPL FY ++S W V II++AN + NPTF LE +AS G L NV+
Sbjct: 128 GTLVIHIRSGDIFKPEKEGWHGMIWYGQPPLLFYEDVMSSAPWVQVDIISNANGEEHQLNPTFGVLEDLASRGLLQLNVT 207
BLAST of mRNA_D-herbacea_F_contig116.1187.1 vs. uniprot
Match: A0A835ZFH5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFH5_9STRA) HSP 1 Score: 60.5 bits (145), Expect = 7.330e-8 Identity = 48/134 (35.82%), Postives = 65/134 (48.51%), Query Frame = 1
Query: 10 LSNEGGVGGGXXXXXXXXAGSLVVHIRSGDIFDPEDQGRVRQGFGQPPLQFYLLAIASRSWSDVTIITS-ANSQVATNPTFAALE-LMASTGALGPNVSAFKDRSLLTDLRAMLCADGLAVARSSLHFLTFAHS 405
+ +GG GGG LV+H+RSGDI+D +GQPPL +Y + R W VTI+T A+ ++ +P L L+ A SAF DLRA+LCA L A+SSL L H+
Sbjct: 205 VCGDGGGGGGKN--------DLVIHLRSGDIWDAPAP---HPWYGQPPLSWYAAVLNHRDWDAVTIVTERAHDELRAHPLATLLPALLRRPAARVVRASAF----WRADLRALLCARHLVTAQSSLTALLLWHA 323 The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig116.1187.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-herbacea_F_contig116.1187.1 >prot_D-herbacea_F_contig116.1187.1 ID=prot_D-herbacea_F_contig116.1187.1|Name=mRNA_D-herbacea_F_contig116.1187.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=149bp RWLLSNEGGVGGGGGIGSDGSAGSLVVHIRSGDIFDPEDQGRVRQGFGQPback to top mRNA from alignment at D-herbacea_F_contig116:529438..532581- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-herbacea_F_contig116.1187.1 ID=mRNA_D-herbacea_F_contig116.1187.1|Name=mRNA_D-herbacea_F_contig116.1187.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=3144bp|location=Sequence derived from alignment at D-herbacea_F_contig116:529438..532581- (Desmarestia herbacea DmunF female)back to top Coding sequence (CDS) from alignment at D-herbacea_F_contig116:529438..532581- >mRNA_D-herbacea_F_contig116.1187.1 ID=mRNA_D-herbacea_F_contig116.1187.1|Name=mRNA_D-herbacea_F_contig116.1187.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=894bp|location=Sequence derived from alignment at D-herbacea_F_contig116:529438..532581- (Desmarestia herbacea DmunF female)back to top |