mRNA_D-herbacea_F_contig116.1186.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig116.1186.1
Unique NamemRNA_D-herbacea_F_contig116.1186.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
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BLAST of mRNA_D-herbacea_F_contig116.1186.1 vs. uniprot
Match: D7FRV9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRV9_ECTSI)

HSP 1 Score: 91.3 bits (225), Expect = 1.820e-19
Identity = 39/83 (46.99%), Postives = 56/83 (67.47%), Query Frame = 3 
Query:    3 YRRMSRAEMKATPENTTLLCIEKPEAEIYGIDWRGDRKPYSIYESWNDTYEQLLEMVVFDGMAGFKRCHL*QRLHPLTIHPSF 251
            +RRM R  +KAT +NTTLL +EKP+AE+YG  W G+   YS+Y++W+DT EQLLEM  F G+ G ++C         ++HP +
Sbjct:  379 FRRMRRPPVKATFDNTTLLLLEKPDAEVYGTAWPGNSPKYSVYQAWHDTPEQLLEMATFGGIEGVQKC---------SVHPPW 452
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BLAST of mRNA_D-herbacea_F_contig116.1186.1 vs. uniprot
Match: D7FHC1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHC1_ECTSI)

HSP 1 Score: 68.2 bits (165), Expect = 3.030e-11
Identity = 23/54 (42.59%), Postives = 39/54 (72.22%), Query Frame = 3 
Query:   45 NTTLLCIEKPEAEIYGIDWRGDRKPYSIYESWNDTYEQLLEMVVFDGMAGFKRC 206
            N +++C+++PE ++YGIDWR  +  Y++Y+SW D    ++EMVV D + G +RC
Sbjct:  506 NASMICLQRPEVQVYGIDWRTTKDAYTVYDSW-DPNSNMMEMVVSDAVKGVQRC 558
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BLAST of mRNA_D-herbacea_F_contig116.1186.1 vs. uniprot
Match: A0A6H5L7B0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7B0_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 3.940e-11
Identity = 25/54 (46.30%), Postives = 38/54 (70.37%), Query Frame = 3 
Query:   45 NTTLLCIEKPEAEIYGIDWRGDRKPYSIYESWNDTYEQLLEMVVFDGMAGFKRC 206
            N T++C+++ E E+YGI+WR   + Y++Y+SW D    LLEMVV D + G +RC
Sbjct:  373 NATMICLQRSEVEVYGIEWRTTSEAYTVYDSW-DPSSNLLEMVVSDSVKGMQRC 425
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BLAST of mRNA_D-herbacea_F_contig116.1186.1 vs. uniprot
Match: D7FSJ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSJ7_ECTSI)

HSP 1 Score: 61.2 bits (147), Expect = 7.470e-9
Identity = 20/54 (37.04%), Postives = 36/54 (66.67%), Query Frame = 3 
Query:   45 NTTLLCIEKPEAEIYGIDWRGDRKPYSIYESWNDTYEQLLEMVVFDGMAGFKRC 206
            + +++C+++PE E+YGI+WR     Y++Y  W+ +  QL EM+V D + G + C
Sbjct:  301 SASMICLQRPEVEVYGIEWRTTSNAYTVYNKWDPSVNQL-EMIVSDDLKGVQHC 353
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig116.1186.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FRV9_ECTSI1.820e-1946.99Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FHC1_ECTSI3.030e-1142.59Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L7B0_9PHAE3.940e-1146.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FSJ7_ECTSI7.470e-937.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig116contigD-herbacea_F_contig116:528005..529436 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size301
Cds size204
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig116.1186.1prot_D-herbacea_F_contig116.1186.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig116 528091..529425 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927556.350644-UTR-D-herbacea_F_contig116:528004..5280901622927556.350644-UTR-D-herbacea_F_contig116:528004..528090Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig116 528005..528090 -
1690790230.7232032-UTR-D-herbacea_F_contig116:528004..5280901690790230.7232032-UTR-D-herbacea_F_contig116:528004..528090Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig116 528005..528090 -
1622927556.3862612-UTR-D-herbacea_F_contig116:529425..5294361622927556.3862612-UTR-D-herbacea_F_contig116:529425..529436Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig116 529426..529436 -
1690790230.7549975-UTR-D-herbacea_F_contig116:529425..5294361690790230.7549975-UTR-D-herbacea_F_contig116:529425..529436Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig116 529426..529436 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927556.3611372-CDS-D-herbacea_F_contig116:528090..5282221622927556.3611372-CDS-D-herbacea_F_contig116:528090..528222Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig116 528091..528222 -
1690790230.736319-CDS-D-herbacea_F_contig116:528090..5282221690790230.736319-CDS-D-herbacea_F_contig116:528090..528222Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig116 528091..528222 -
1622927556.3737702-CDS-D-herbacea_F_contig116:529353..5294251622927556.3737702-CDS-D-herbacea_F_contig116:529353..529425Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig116 529354..529425 -
1690790230.747321-CDS-D-herbacea_F_contig116:529353..5294251690790230.747321-CDS-D-herbacea_F_contig116:529353..529425Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig116 529354..529425 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig116.1186.1

>prot_D-herbacea_F_contig116.1186.1 ID=prot_D-herbacea_F_contig116.1186.1|Name=mRNA_D-herbacea_F_contig116.1186.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=68bp
MSRAEMKATPENTTLLCIEKPEAEIYGIDWRGDRKPYSIYESWNDTYEQL
LEMVVFDGMAGFKRCHL*
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mRNA from alignment at D-herbacea_F_contig116:528005..529436-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig116.1186.1 ID=mRNA_D-herbacea_F_contig116.1186.1|Name=mRNA_D-herbacea_F_contig116.1186.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=1432bp|location=Sequence derived from alignment at D-herbacea_F_contig116:528005..529436- (Desmarestia herbacea DmunF female)
CGTACAGGCGCATGAGCCGCGCGGAGATGAAGGCAACTCCGGAGAACACG
ACGCTGCTGTGCATCGAGAAGCCGGAGGCTGAGGTGTGTGTTGTTGTGTA
GTAGTAGCGTTTGTGTGTGTACACGTGTAGTGCGTAATACCCGTATGTCT
TAATGTTGTGTGCTTTTCGAAGTATAGTAATAGCGGTGGTGGTTTTCGGC
ATACGATTACAAAATTTTGCCAAAGTTGGTTTTTGGCTGAGATATGGAGT
TCCTCAAGTGAGGAGCCTCAGAAAATTTGGGTACCCCCCCCGTGCCGCGG
CATGCCTCTGGGGTACACACAAAGAGTGTAGTGAGGTGGCGTAGTGTGTG
TTTGTCGTGTGTTTTTCGAAGTATTTAGTATCAGACGTGGTGGTGGTGAT
GGTGGTGGCGGTGGCGGTGGCGGTGGCGTGTGGGGGGGGGGGGGTTGTAG
GGAGAAGGGGGAGGGGGGACCGGGGTTGGAGTTCGTTGTCGTTTTGTGGC
AGGTGTGTCGAAACAATGGCTCGTTATTTTCGAGAAGCTTGTTTCTTGGT
AGGATCACAGGGGAATAATAGATGCCAGAAGTCGCGAGTGAGGATGTATA
TATATCTAGATCTAACTACCCCTTTTGTGTCTCCGAAAAAGGTTGTAAAC
TCATATCAGCTACAATAGTAAGGACGGTACGAGGTACCCCTTTCGTGTGT
CTCGGAGTAATGTAAATACATCAGCAGCTACAATAATAAGGACGCCGCAT
TGTACCGTAATATCACAGTAGTACCAAACTCAACCCGCCCCGGCTTTCGG
AAAAAAATACCCCCGTCAACGACTCTCTGTGTCACACCATTGCTTTTTTT
GTTAGGCTGGCTGGAATGACAGGTGTAATTCGACCCCCCCCTAGGGGATA
GATGGTGGCCACAATCGCGAAACATCAAGGGGATGCGATAAGCAAAAGGT
TCTTACGTAAGATATCGCTAAATAAACCCAGAAAGAGCGCGCAAAGGTTG
GAGGTGTCTCTATTAGCAGTAGGAACGGTGCCTCCTTCTCAAAAGTGCTC
TGTGATCAATGGTCAAATGACTATGGCAAGTAACAAATGAGTAGTACCAC
CCCCCCCTCCCCACCCCTTCCCCGCGCGCGCACTCACGCACCCCCCCGCT
CACGCATGCATCATCCCATCCCCGCAATAATACACGCCTGCCTTCCGTTG
ACCTGCCCCGCAAGATTTACGGGATAGACTGGAGGGGAGACCGGAAACCG
TATAGCATATACGAGAGCTGGAACGATACCTACGAGCAGCTGTTGGAGAT
GGTTGTCTTCGATGGAATGGCTGGGTTTAAGCGATGTCACCTCTAACAGC
GACTGCATCCATTAACAATCCACCCTTCCTTCCTTTTTGTAAAAAAAACG
GGTCCGGGCTCGGGTTTCTGGAGGAAATAGTG
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Coding sequence (CDS) from alignment at D-herbacea_F_contig116:528005..529436-

>mRNA_D-herbacea_F_contig116.1186.1 ID=mRNA_D-herbacea_F_contig116.1186.1|Name=mRNA_D-herbacea_F_contig116.1186.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=408bp|location=Sequence derived from alignment at D-herbacea_F_contig116:528005..529436- (Desmarestia herbacea DmunF female)
ATGAGCCGCGCGGAGATGAAGGCAACTCCGGAGAACACGACGCTGCTGTG
CATCGAGAAGCCGGAGGCTGAGATGAGCCGCGCGGAGATGAAGGCAACTC
CGGAGAACACGACGCTGCTGTGCATCGAGAAGCCGGAGGCTGAGATTTAC
GGGATAGACTGGAGGGGAGACCGGAAACCGTATAGCATATACGAGAGCTG
GAACGATACCTACGAGCAGCTGTTGGAGATGGTTGTCTTCGATGGAATGG
CTGGGTTTAAGCGATGTCACCTCTAAATTTACGGGATAGACTGGAGGGGA
GACCGGAAACCGTATAGCATATACGAGAGCTGGAACGATACCTACGAGCA
GCTGTTGGAGATGGTTGTCTTCGATGGAATGGCTGGGTTTAAGCGATGTC
ACCTCTAA
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