mRNA_D-herbacea_F_contig116.1183.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig116.1183.1
Unique NamemRNA_D-herbacea_F_contig116.1183.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
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BLAST of mRNA_D-herbacea_F_contig116.1183.1 vs. uniprot
Match: D7FYE3_ECTSI (SUN domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYE3_ECTSI)

HSP 1 Score: 144 bits (362), Expect = 1.500e-37
Identity = 93/181 (51.38%), Postives = 107/181 (59.12%), Query Frame = 1 
Query:   25 VEDARLSC-----------GD--LSKRVETFVAEEV---WTKLHDNEDDEGGDGIDMPLPLQTLYTLEEVKELVATEVEIFSYGGTGMRDYASLLSGASVAYGPLVTE----------DG---RQGQLTSPTLAHSALPWADYVLHWLRVPGRVYADDGDAALSLSNSLGSCFAFRGGEGR 480
            VEDA LS            GD  L  RVE   A+EV   W +     +  G D +     +  L T+EE +ELVA EVE+FS GGTGM DYASL  GA V YGP              DG   ++G LTS TLA + L W DY+LH LRVPGRVYA+DGDAALS SNSLGSCFAF+GGEGR
Sbjct:  191 VEDAGLSASTAADAAAAADGDRNLQTRVEAIAAQEVALKWGEAEATGEHGGRDAVSKEAGV--LATVEEAEELVAREVEMFSSGGTGMPDYASLTPGAKVVYGPFPVAPAYDGEAQQGDGMVEKKGWLTSKTLASTELEWHDYLLHMLRVPGRVYAEDGDAALSASNSLGSCFAFKGGEGR 369
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig116.1183.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FYE3_ECTSI1.500e-3751.38SUN domain-containing protein n=2 Tax=Ectocarpus T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig116contigD-herbacea_F_contig116:475925..478281 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSUN domain
Ec32 orthologEc-08_003710.1
Exons3
Model size483
Cds size480
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig116.1183.1prot_D-herbacea_F_contig116.1183.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig116 475926..478281 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927556.278846-CDS-D-herbacea_F_contig116:475925..4761921622927556.278846-CDS-D-herbacea_F_contig116:475925..476192Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig116 475926..476192 -
1690790230.674648-CDS-D-herbacea_F_contig116:475925..4761921690790230.674648-CDS-D-herbacea_F_contig116:475925..476192Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig116 475926..476192 -
1622927556.2949839-CDS-D-herbacea_F_contig116:477467..4775901622927556.2949839-CDS-D-herbacea_F_contig116:477467..477590Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig116 477468..477590 -
1690790230.6987538-CDS-D-herbacea_F_contig116:477467..4775901690790230.6987538-CDS-D-herbacea_F_contig116:477467..477590Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig116 477468..477590 -
1622927556.3071566-CDS-D-herbacea_F_contig116:478191..4782811622927556.3071566-CDS-D-herbacea_F_contig116:478191..478281Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig116 478192..478281 -
1690790230.7137225-CDS-D-herbacea_F_contig116:478191..4782811690790230.7137225-CDS-D-herbacea_F_contig116:478191..478281Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig116 478192..478281 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig116.1183.1

>prot_D-herbacea_F_contig116.1183.1 ID=prot_D-herbacea_F_contig116.1183.1|Name=mRNA_D-herbacea_F_contig116.1183.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=160bp
DIERLLERVEDARLSCGDLSKRVETFVAEEVWTKLHDNEDDEGGDGIDMP
LPLQTLYTLEEVKELVATEVEIFSYGGTGMRDYASLLSGASVAYGPLVTE
DGRQGQLTSPTLAHSALPWADYVLHWLRVPGRVYADDGDAALSLSNSLGS
CFAFRGGEGR
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mRNA from alignment at D-herbacea_F_contig116:475925..478281-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig116.1183.1 ID=mRNA_D-herbacea_F_contig116.1183.1|Name=mRNA_D-herbacea_F_contig116.1183.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=2357bp|location=Sequence derived from alignment at D-herbacea_F_contig116:475925..478281- (Desmarestia herbacea DmunF female)
GACATCGAACGTCTCCTCGAGCGCGTCGAAGATGCCAGGCTGTCGTGCGG
TGACCTGTCGAAGCGCGTTGAGACATTCGTGGCAGAAGAGGTAAAGCCCC
GCCCTCACGTACACACCCTACATTTTTTTTTTTTTTTTTTTCCATTTGTG
AAAATAGGGACAACTGTCCTCGACAGACGTGGGGGGCGATTTTATCCCTT
TTTAATAATAATAATAATAATAATTATAATAATAACAATAGGTCATCTCC
GCACATCCCGTATATTGTCGTCCGCTCTAATCTTTCTCCAGCTCCATCTC
TCTTCGTAAGACTCAGATCCGGGGTACCATAGCAGGCGCTACTCCCCCCT
CCCCACCTACGAACGGTACGTGCCTACATTTTTATCGCGAAAAGGGTGCT
GCAGCACTTTCTTCCCTCGTCGACTTTCATCGAATTGTGCTTACTCACGC
TCTTCTCGCGTTTTCCGCGACGGAGGTATGGCACAGAAAATTGCCACCGG
GAATTGAACTCCCAACTTCGGCCAACAGAGGCGAACAGCTTAGTCTCGTA
CTTCGAAGTAGACCATCGCTCCACCCCTTATCATTGGAATTTGTAAGGTT
CGTGATCCATCCGCCGGAGAAGTAACAAAAAAAGTTGCGTTATTTTTTTT
GCTGGTCGCGTTTTTTTTGTTTTTTTTTTTCGTTTGTGGAGGTTTGGACG
AAGTTGCACGACAACGAAGATGATGAGGGCGGCGATGGGATCGACATGCC
TCTTCCCCTGCAAACCCTGTACACCCTTGAGGAGGTCAAAGAGCTGGTGG
CGACGGAGGTGGAGGTGAGCATATGTGTGCTTCATATCGTAGCTACGAGT
ATCATACGTGTGTACCATGCGAATACAAGAGCTTGTGCGTCGGCGGAGTG
GGGTGGGTCGCTGCAGTCAGTGCGCGGCAGACCATTGTAGAGCATTCGTA
GCTGGTGTTATGTTGTATGTTTTATATCGTCTCGCTCGTATTGTTGTTGT
GGTGGTTGTCTTCATATATATCGTCTCCTACAAAAGTGAAAATTAATGAA
TGTCTTGAATTATTAATAGTATGAATTAATTAATTTTTTGGCGTTTCATA
CTATTAACAGAATTTCTACCTACTAACTACTAACTACTACTCTACAACTA
CTACTACACAACATCTATACCACTACAGTATATAAACCCATCTACTTCGA
AGTATAATATTATAGTAATAATGTCCACGTGTATCCAATATCTTAGCATT
CGGTATTAAAAGTCGTCCTTTCCGTCCTACACTCTTTTTTTTTTTTTTTT
TTTTCGTCCCATTTATTGTCTTCGCTCTATTCTTACTCTAGATCCATTAT
CTCTTCGTACCTCAGATCCGGGGTCACATAGTAGGCACTCCTCCCGGCTT
CCCACTACGTTACGTGCCTAGATTTTTATCGCGAGTAGAGTCCAGTACTT
TATTCCCTCGTCTACTATTTCATCCAATTGGTCACCTGTGAAAACTAGTT
TATGTCTTGGCATTAGTATCGTTAATTAATTGTTTAATTATGCTCGTAGA
CTAATTTATTGCTTAGTTAATTGATTTTTTTACTTTCTCCCTGGGATATG
AAAACTAATCAATGTCTTCAAGTACAAGTAGCATACGAAGTATAATAATA
AGTTACGTTTTTGACGTTTGTATTGTACGCGCTTGTCAATATCAGGTTCC
CTGGACATCAATAAACCCGCCCCCTGAGTGGTATAGAAGGTATAGGCACC
CCGGCCCGTACGGCCCGTCTCGGTGTGTGCCTTCGTGTTATACAAAGCCC
CGAGACGTTCCGGTTAAGCTTCACTCCCCCCCCCCCCACACCCCGCGCGC
GCTTATGATAAGATAAGCAAAAGGTTTTTATGATAAATTAGGTATAGAAA
AAACGTAAAGAGCGCCCAAATGTTGGACATGTCTCTCTTAGGAGTAGGAA
CGGTGCTTCCGTCTCGAAAGGGAGACGTGGTCAATGCGGTCGAATGACTC
TAAGGCAAGCAACAAATGAATACCCCCCCCCCCCCCCCCCTTCCCCCGAT
ACCGCCGCCACTATTGAAACCCTCTCTTCTCAAAAACAGATATTCTCCTA
CGGCGGCACAGGTATGCGAGATTACGCCTCCCTTCTCTCGGGGGCTTCGG
TGGCGTACGGACCTCTGGTAACCGAAGACGGGCGACAGGGACAGCTCACG
TCGCCGACCTTGGCTCATTCCGCTCTTCCGTGGGCGGATTACGTGCTCCA
CTGGCTGAGGGTTCCGGGGCGAGTGTACGCCGACGACGGGGACGCCGCGC
TGTCGTTGTCAAACTCCCTTGGTTCCTGCTTTGCGTTTCGGGGCGGGGAG
GGCCGGC
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Coding sequence (CDS) from alignment at D-herbacea_F_contig116:475925..478281-

>mRNA_D-herbacea_F_contig116.1183.1 ID=mRNA_D-herbacea_F_contig116.1183.1|Name=mRNA_D-herbacea_F_contig116.1183.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=960bp|location=Sequence derived from alignment at D-herbacea_F_contig116:475925..478281- (Desmarestia herbacea DmunF female)
GACATCGAACGTCTCCTCGAGCGCGTCGAAGATGCCAGGCTGTCGTGCGG
TGACCTGTCGAAGCGCGTTGAGACATTCGTGGCAGAAGAGGACATCGAAC
GTCTCCTCGAGCGCGTCGAAGATGCCAGGCTGTCGTGCGGTGACCTGTCG
AAGCGCGTTGAGACATTCGTGGCAGAAGAGGTTTGGACGAAGTTGCACGA
CAACGAAGATGATGAGGGCGGCGATGGGATCGACATGCCTCTTCCCCTGC
AAACCCTGTACACCCTTGAGGAGGTCAAAGAGCTGGTGGCGACGGAGGTG
GAGGTTTGGACGAAGTTGCACGACAACGAAGATGATGAGGGCGGCGATGG
GATCGACATGCCTCTTCCCCTGCAAACCCTGTACACCCTTGAGGAGGTCA
AAGAGCTGGTGGCGACGGAGGTGGAGATATTCTCCTACGGCGGCACAGGT
ATGCGAGATTACGCCTCCCTTCTCTCGGGGGCTTCGGTGGCGTACGGACC
TCTGGTAACCGAAGACGGGCGACAGGGACAGCTCACGTCGCCGACCTTGG
CTCATTCCGCTCTTCCGTGGGCGGATTACGTGCTCCACTGGCTGAGGGTT
CCGGGGCGAGTGTACGCCGACGACGGGGACGCCGCGCTGTCGTTGTCAAA
CTCCCTTGGTTCCTGCTTTGCGTTTCGGGGCGGGGAGGGCCGGATATTCT
CCTACGGCGGCACAGGTATGCGAGATTACGCCTCCCTTCTCTCGGGGGCT
TCGGTGGCGTACGGACCTCTGGTAACCGAAGACGGGCGACAGGGACAGCT
CACGTCGCCGACCTTGGCTCATTCCGCTCTTCCGTGGGCGGATTACGTGC
TCCACTGGCTGAGGGTTCCGGGGCGAGTGTACGCCGACGACGGGGACGCC
GCGCTGTCGTTGTCAAACTCCCTTGGTTCCTGCTTTGCGTTTCGGGGCGG
GGAGGGCCGG
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