mRNA_D-herbacea_F_contig116.1179.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig116.1179.1
Unique NamemRNA_D-herbacea_F_contig116.1179.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
[Close]
BLAST of mRNA_D-herbacea_F_contig116.1179.1 vs. uniprot
Match: D8LT28_ECTSI (RING-Gid-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT28_ECTSI)

HSP 1 Score: 189 bits (479), Expect = 3.540e-56
Identity = 92/123 (74.80%), Postives = 106/123 (86.18%), Query Frame = 2 
Query:    2 VDGSRAAGLARESILAVAFRAGVLALPDLVKMAAARRGSNQAWDGMQELHVDLALPPGMRYHSMFACPVTGEPSTSGNPPVLLKCGHVLLRSSVGELARNASKFKCPTCRVEQTENDTMILTL 370
            VD SR +GL+RESIL+VAFRAG+LALP LVKMAA  RGSNQ W+GMQEL +++ LPPG+RYHSMF+CPV+ EPST  NPPVLLKCGHV+LRSSV  LARN S+FKCPTC VEQ EN+TM LTL
Sbjct:  131 VDASRVSGLSRESILSVAFRAGILALPTLVKMAAVVRGSNQEWNGMQELPLEVPLPPGLRYHSMFSCPVSREPSTLDNPPVLLKCGHVVLRSSVSRLARNGSRFKCPTCPVEQMENETMPLTL 253
[Close]
BLAST of mRNA_D-herbacea_F_contig116.1179.1 vs. uniprot
Match: A0A6H5K8M5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8M5_9PHAE)

HSP 1 Score: 182 bits (463), Expect = 2.570e-51
Identity = 89/123 (72.36%), Postives = 104/123 (84.55%), Query Frame = 2 
Query:    2 VDGSRAAGLARESILAVAFRAGVLALPDLVKMAAARRGSNQAWDGMQELHVDLALPPGMRYHSMFACPVTGEPSTSGNPPVLLKCGHVLLRSSVGELARNASKFKCPTCRVEQTENDTMILTL 370
            VD SR +GL+RESIL+VAFRAG+LALP LVKMAA  RGSN  W+GM+EL +++ LPPG+RYHSMF+CPV+ EPST  NPPVLLKCGH +LRSSV  LARN S+FKCPTC VEQ EN+TM LTL
Sbjct:  357 VDASRISGLSRESILSVAFRAGILALPTLVKMAAVVRGSNLEWNGMRELPLEVPLPPGLRYHSMFSCPVSREPSTLDNPPVLLKCGHAVLRSSVSRLARNGSRFKCPTCPVEQMENETMPLTL 479
[Close]
BLAST of mRNA_D-herbacea_F_contig116.1179.1 vs. uniprot
Match: A0A261Y3R7_9FUNG (Uncharacterized protein n=1 Tax=Bifiguratus adelaidae TaxID=1938954 RepID=A0A261Y3R7_9FUNG)

HSP 1 Score: 107 bits (266), Expect = 1.140e-23
Identity = 50/116 (43.10%), Postives = 72/116 (62.07%), Query Frame = 2 
Query:   23 GLARESILAVAFRAGVLALPDLVKMAAARRGSNQAWDGMQELHVDLALPPGMRYHSMFACPVTGEPSTSGNPPVLLKCGHVLLRSSVGELA----RNASKFKCPTCRVEQTENDTM 358
            G++ ES L V+   G +ALP ++KMA   +     W    EL V++ LP  +RYHS+FACPV+ E +T  NPP+++ CGHV+ + S+ +L     RN+SKFKCP C  E T N  +
Sbjct:  230 GMSAESPLFVSVMVGTIALPTIIKMATIMKDKKTEWSQQDELPVEIPLPENLRYHSIFACPVSKEQATEENPPMMMPCGHVICKESLSKLGKGSRRNSSKFKCPYCPSESTPNQAV 345
[Close]
BLAST of mRNA_D-herbacea_F_contig116.1179.1 vs. uniprot
Match: A0A2D4CM94_PYTIN (RMD5 family protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CM94_PYTIN)

HSP 1 Score: 105 bits (263), Expect = 6.900e-23
Identity = 52/107 (48.60%), Postives = 70/107 (65.42%), Query Frame = 2 
Query:   38 SILAVAFRAGVLALPDLVKMAAARRGSNQAWDGMQELHVDLALPPGMRYHSMFACPVTGEPSTSGNPPVLLKCGHVLLRSSVGELARNASK-FKCPTCRVEQTENDT 355
            S L     AG+ ALP + K+ A        WD ++EL V+L +P   RYH++FACPV+ E ST  NPP+LLKCGHV+ +S V  ++ N ++ FKCPTC VEQTE +T
Sbjct:  305 SYLGTCLSAGIAALPAMRKLVAVMDTKVTNWDTLEELPVELPIPDEHRYHTVFACPVSKEESTPSNPPILLKCGHVICKSCVKRISFNMTRRFKCPTCPVEQTECET 411
[Close]
BLAST of mRNA_D-herbacea_F_contig116.1179.1 vs. uniprot
Match: A0A015LDZ0_RHIIW (Ubiquitin-protein ligase RMD5 n=8 Tax=Glomeraceae TaxID=36751 RepID=A0A015LDZ0_RHIIW)

HSP 1 Score: 104 bits (260), Expect = 8.640e-23
Identity = 49/112 (43.75%), Postives = 68/112 (60.71%), Query Frame = 2 
Query:   23 GLARESILAVAFRAGVLALPDLVKMAAARRGSNQAWDGMQELHVDLALPPGMRYHSMFACPVTGEPSTSGNPPVLLKCGHVLLRSSVGELARNASKFKCPTCRVEQTENDTM 358
            G++ ES L ++   G  ALP ++KMA   +     W    EL V++ LP  MRYHS+FACPV+ E ST  NPP++L CGHV+   S+ +L+R  S+FKCP C  E   N  +
Sbjct:  238 GMSSESPLYISVTVGATALPTILKMATIMKEKKNEWSQQDELPVEVPLPDYMRYHSIFACPVSKEQSTEKNPPMMLPCGHVICHESLNKLSRGNSRFKCPYCPHESIANQAL 349
[Close]
BLAST of mRNA_D-herbacea_F_contig116.1179.1 vs. uniprot
Match: A0A484E8Z1_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E8Z1_BRELC)

HSP 1 Score: 105 bits (261), Expect = 1.350e-22
Identity = 52/108 (48.15%), Postives = 71/108 (65.74%), Query Frame = 2 
Query:   35 ESILAVAFRAGVLALPDLVKMAAARRGSNQAWDGMQELHVDLALPPGMRYHSMFACPVTGEPSTSGNPPVLLKCGHVLLRSSVGELARNASK-FKCPTCRVEQTENDT 355
            +S L    R GV ALP + K+A+        W+ ++EL V++ +    R+HS+F+CPV+ E ST  NPPVLLKCGHV+  S V  ++ N S+ FKCPTC VEQTE+DT
Sbjct:  307 QSYLDTCLRVGVPALPAMRKLASVMDSKLADWNNLEELPVEIPIAKEFRFHSVFSCPVSKEESTPENPPVLLKCGHVICHSCVKRISYNLSRQFKCPTCPVEQTESDT 414
[Close]
BLAST of mRNA_D-herbacea_F_contig116.1179.1 vs. uniprot
Match: A0A0P1AZT3_PLAHL (Rmd5 family protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AZT3_PLAHL)

HSP 1 Score: 103 bits (257), Expect = 6.100e-22
Identity = 49/110 (44.55%), Postives = 70/110 (63.64%), Query Frame = 2 
Query:   38 SILAVAFRAGVLALPDLVKMAAARRGSNQAWDGMQELHVDLALPPGMRYHSMFACPVTGEPSTSGNPPVLLKCGHVLLRSSVGELARNASK-FKCPTCRVEQTENDTMIL 364
            S L +    GV ALP + K+ +        WD M+EL V++ +P   R+H++F+CPV+ E ST  NPP+LLKCGHV+  S V   + N ++ FKCPTC +EQTE +T+ L
Sbjct:  334 SYLGICLSTGVSALPAMQKLVSLTDSKLIDWDRMEELPVEIPIPQEFRFHNVFSCPVSKEESTPNNPPILLKCGHVICHSCVKRFSYNMTRRFKCPTCPIEQTEEETLKL 443
[Close]
BLAST of mRNA_D-herbacea_F_contig116.1179.1 vs. uniprot
Match: A0A0D2WQV5_CAPO3 (Uncharacterized protein n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2WQV5_CAPO3)

HSP 1 Score: 103 bits (256), Expect = 6.560e-22
Identity = 51/117 (43.59%), Postives = 76/117 (64.96%), Query Frame = 2 
Query:   23 GLARESILAVAFRAGVLALPDLVKMAAARRG---SNQAWDGMQELHVDLALPPGMRYHSMFACPVTGEPSTSGNPPVLLKCGHVLLRSSVGELARNASKFKCPTCRVEQTENDTMIL 364
            G+  +S L V+F AG  ALP L+KMA+  +G   S+  W    EL V++ L    ++HS+FACPV+ E ++  NPP+++KCGHV+ + S+  L++N  +FKCP C VEQT  D  I+
Sbjct:  298 GMTYDSPLFVSFLAGCAALPTLLKMASVMQGRGASSTLWTSKDELPVEIELGKDSQFHSVFACPVSREQASPENPPMMMKCGHVVCKLSLERLSKNGGRFKCPYCPVEQTPADAHIV 414
[Close]
BLAST of mRNA_D-herbacea_F_contig116.1179.1 vs. uniprot
Match: A0A3N4LQF3_9PEZI (Uncharacterized protein n=1 Tax=Terfezia boudieri ATCC MYA-4762 TaxID=1051890 RepID=A0A3N4LQF3_9PEZI)

HSP 1 Score: 102 bits (255), Expect = 7.340e-22
Identity = 49/109 (44.95%), Postives = 71/109 (65.14%), Query Frame = 2 
Query:   23 GLARESILAVAFRAGVLALPDLVKMAAARRGSNQAWDGMQELHVDLALPPGMRYHSMFACPVTGEPSTSGNPPVLLKCGHVLLRSSVGELARNASK--FKCPTCRVEQT 343
            GL+ ES L +A  AG +ALP L+KM + R+  N AW  + EL V++ LPP  ++HS+F CPV+ + +T  NPP++L CGHV+ + S+  LA+  S+   KCP C  E T
Sbjct:  278 GLSAESPLYIAATAGAIALPTLLKMTSIRKEKNTAWSSVNELPVEIPLPPRYQFHSIFVCPVSKDQTTETNPPMMLPCGHVIAQDSLHRLAKGGSQVTLKCPYCPKEST 386
[Close]
BLAST of mRNA_D-herbacea_F_contig116.1179.1 vs. uniprot
Match: A0A2R6W6A5_MARPO (Uncharacterized protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6W6A5_MARPO)

HSP 1 Score: 100 bits (249), Expect = 4.630e-21
Identity = 51/108 (47.22%), Postives = 68/108 (62.96%), Query Frame = 2 
Query:   23 GLARESILAVAFRAGVLALPDLVKMAAARRGSNQAWDGMQELHVDLALPPGMRYHSMFACPVTGEPSTSGNPPVLLKCGHVLLRSSVGELAR-NASKFKCPTCRVEQT 343
            G A ES L V   AG  ALP LVK+A       Q W  M++L V++ L    ++HS+FACPV+ +PST+ NPP+L+ CGHVL + S+ +LA+ N   FKCP C  E T
Sbjct:  270 GQAYESPLHVTISAGAQALPTLVKLATIMANKKQEWQNMKQLPVEIELSKEFQFHSIFACPVSRDPSTAENPPMLMPCGHVLCKQSIQKLAKGNFRTFKCPYCPSETT 377
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig116.1179.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LT28_ECTSI3.540e-5674.80RING-Gid-type domain-containing protein n=1 Tax=Ec... [more]
A0A6H5K8M5_9PHAE2.570e-5172.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A261Y3R7_9FUNG1.140e-2343.10Uncharacterized protein n=1 Tax=Bifiguratus adelai... [more]
A0A2D4CM94_PYTIN6.900e-2348.60RMD5 family protein n=1 Tax=Pythium insidiosum Tax... [more]
A0A015LDZ0_RHIIW8.640e-2343.75Ubiquitin-protein ligase RMD5 n=8 Tax=Glomeraceae ... [more]
A0A484E8Z1_BRELC1.350e-2248.15Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
A0A0P1AZT3_PLAHL6.100e-2244.55Rmd5 family protein n=1 Tax=Plasmopara halstedii T... [more]
A0A0D2WQV5_CAPO36.560e-2243.59Uncharacterized protein n=1 Tax=Capsaspora owczarz... [more]
A0A3N4LQF3_9PEZI7.340e-2244.95Uncharacterized protein n=1 Tax=Terfezia boudieri ... [more]
A0A2R6W6A5_MARPO4.630e-2147.22Uncharacterized protein n=2 Tax=Marchantia polymor... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig116contigD-herbacea_F_contig116:420656..424530 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score146.4
Seed ortholog evalue6.8e-33
Seed eggNOG ortholog2880.D8LT28
Preferred nameRMND5A
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006508,GO:0006511,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010498,GO:0019538,GO:0019941,GO:0030163,GO:0032991,GO:0034657,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044464,GO:0051603,GO:0071704,GO:1901564,GO:1901565,GO:1901575
EggNOG free text desc.proteasome-mediated ubiquitin-dependent protein catabolic process
EggNOG OGsCOG5109@1,KOG2817@2759
Ec32 ortholog descriptionZinc finger, RING/FYVE/PHD-type
Ec32 orthologEc-08_003890.1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size732
Cds size279
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig116.1179.1prot_D-herbacea_F_contig116.1179.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig116 421015..423045 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927555.9273653-UTR-D-herbacea_F_contig116:420655..4210141622927555.9273653-UTR-D-herbacea_F_contig116:420655..421014Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig116 420656..421014 -
1690790230.3854494-UTR-D-herbacea_F_contig116:420655..4210141690790230.3854494-UTR-D-herbacea_F_contig116:420655..421014Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig116 420656..421014 -
1622927555.9651322-UTR-D-herbacea_F_contig116:423045..4230781622927555.9651322-UTR-D-herbacea_F_contig116:423045..423078Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig116 423046..423078 -
1690790230.4145477-UTR-D-herbacea_F_contig116:423045..4230781690790230.4145477-UTR-D-herbacea_F_contig116:423045..423078Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig116 423046..423078 -
1622927555.9747875-UTR-D-herbacea_F_contig116:424469..4245301622927555.9747875-UTR-D-herbacea_F_contig116:424469..424530Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig116 424470..424530 -
1690790230.428834-UTR-D-herbacea_F_contig116:424469..4245301690790230.428834-UTR-D-herbacea_F_contig116:424469..424530Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig116 424470..424530 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927555.9402087-CDS-D-herbacea_F_contig116:421014..4211651622927555.9402087-CDS-D-herbacea_F_contig116:421014..421165Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig116 421015..421165 -
1690790230.3958907-CDS-D-herbacea_F_contig116:421014..4211651690790230.3958907-CDS-D-herbacea_F_contig116:421014..421165Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig116 421015..421165 -
1622927555.9504337-CDS-D-herbacea_F_contig116:422917..4230451622927555.9504337-CDS-D-herbacea_F_contig116:422917..423045Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig116 422918..423045 -
1690790230.4051678-CDS-D-herbacea_F_contig116:422917..4230451690790230.4051678-CDS-D-herbacea_F_contig116:422917..423045Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig116 422918..423045 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig116.1179.1

>prot_D-herbacea_F_contig116.1179.1 ID=prot_D-herbacea_F_contig116.1179.1|Name=mRNA_D-herbacea_F_contig116.1179.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=93bp
MAAARRGSNQAWDGMQELHVDLALPPGMRYHSMFACPVTGEPSTSGNPPV
LLKCGHVLLRSSVGELARNASKFKCPTCRVEQTENDTMILTL*
back to top

mRNA from alignment at D-herbacea_F_contig116:420656..424530-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig116.1179.1 ID=mRNA_D-herbacea_F_contig116.1179.1|Name=mRNA_D-herbacea_F_contig116.1179.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=3875bp|location=Sequence derived from alignment at D-herbacea_F_contig116:420656..424530- (Desmarestia herbacea DmunF female)
GGTGGACGGGAGCAGGGCGGCCGGACTAGCGAGAGAGAGCATTCTCGCGG
TGGCGTTTAGGGTAGGAGTAATATTTATAACTTATCTGAGGACCGATAGA
ATCCGCGCGACCGATGTATCACACAGTGAGGTTGACGATTATCCCCTGGC
CCCCGAACCAGTTTGGAACGTCACGGCTGATGTTTTTTGTAAGTTAAATA
ATAATATTTATCATAAAATAAGCATTTTTATTTTCATTTTCATTTGCTTT
TTTTTTTTCTTCTTTTATTATCGTATTGTTCTATTTCTTTTTTCTCGTTC
TGTTTTGTTCAATTTGCGATTTGATGCTACTATTATATAGCTTGTGACCA
CGGAATTTTTGATATCTCTCTATTACTAAGATGGAAGAAGAGCAATCAGT
ACCAGTAGAGACTCTTGAGTACGTTACTACTGCTGGATGTCATAGGGTAG
GAAGGGCGATTTTTTAATGCGAAGACGACAAGAACAACAGCATCATGCCT
CACGTTAATTTAATTTATCTATCCAGCTACTACAGTACTTGTAGTTTACG
GGAGGAGCTCTTGTACTCGTCGCTCAGCGCGCCTGTCTGAGCAAGCCATG
GTGACAGGTGTCCTCCCTTCACCTCCCCCTCCCGTGCCCATCTCGTTACG
TACATGCCTCGTTTTTTTTTATCGCGCACACAATTCGATGAAAGTCGACG
AGGGAAGAAAGTGCTGCACTCTTCTCGCGACAAAAATGTAGGCACGTACC
GTAGTGGGAAGGCGGGAAAAGCGCCTGCTATGTGACCCCGGATCTGAGTT
ACGAAGAGAGATGGAGCTAGAGAAAGAATAGGGTGAAGATAATAAATGAG
ACGCAATTAAAAAAAACAAAAAAAAAACAGGGTCCGGCATTTCCATAATA
ATAACTCGTCGAATTTTCATCGAGTTTTTCTTGCTCGCGCTTTCCGCGAC
GGAAAATGGCACACAAAAAAAAAGTTACAGTTTTGTGTTTGCCGGGATTC
GAACCCCCTAAGTTCTGGCAACAGGGTCGAAAATGGCACCTAAAAAAGTA
CAATCTTGTATTGGCCGGGATTCGAACCCGCGAATTTCTGGCAACAGGGT
CGAAAATGGCACATAAAAAAAAGTACAATCTTGTATTGGCCGGGATTCGA
ACCCCGAATTTGGTGGCAACAGGGTCGATTAATACTCCATTAGACCACAG
CGCCACCCCTATTTGTATTTTTTTATTAGGAAACCATGTTATTTTTTGTC
TCATGTTTGTATATTTTCTCCGTTCGGATGTGAAAAAAAAATTAATGTCT
TGAATTATGATAGTATAATTTATGTTTTTTTTTTTTTTTTTTGGCGTTTG
TATCGTACTTTTGTAAATAGTAATGTTTTCCCTCTCTTTTTTCACTTTAA
AAACAATATAGTTCGAAGTATAGATTTTCCATGCATTTTTTTTTTGTTGC
AGGCCGGGGTATTGGCTTTGCCTGATCTGGTCAAGATGGCGGCCGCGAGG
CGAGGCTCGAACCAGGCCTGGGACGGTATGCAGGAGCTCCACGTGGACTT
AGCTCTGCCCCCCGGCATGCGCTACCACAGCATGTTTGCTTGTCCTGTGA
CAGGAGAGCCAAGGTTGGTAAAAACGGTTCTCGTTAGTTAGCTCTTCGTT
GAGAGAGCTGTGATAGTTTTTGCGCTGTTTAGATGATACCCGTCCAACTC
AGGGTTTCGATGGTTGTCGAGTCGTCTTATTTTTCATAGAAAAGCTAAAA
CTTTGTCGTGTGGCAGGAGAGCCAAGGTCGGTGAAAGCATGCACGGTTTT
TTAGCTCTATAGTAGAGCTTGTCGTGCTTCAATTGCGTTATTTTGATAGT
ATGATGCCATGATACCCGTCCACGGGGGGGGCGCGGATGGGAATCGAGGA
TGCCCCCCCTCAACGACGGATTTCTGGGCGCTTATCGAGGTTTGTTAGAG
CACATGTACGTGACGAAATTAGGGTGTTGAAACGTGGAGGAACAGCACTA
ACGCCGAGGTGAATTGAATAGACGAGGAACAACTAGAAACATGATAACAT
TTGGAATGGACTGGACTGAAAGTCACATGTAATACACGAGAATTCTCACA
CTGTGCAAACTCGAGGAATAATAGTTTCTTCTGGTACCGCCGAAGAATCG
TTGCCCTCCAAATCATCTTACTCTCTAGTCTCTTTCGCTTGACCTTCTTC
GCTCTCACACCCACCAGACATTACCCAGGCGTAGCCTACGGTTGGGTGGT
ACTAATATGTACTACTACTGTTGTATATAGACTGTGCCGTACTATTGACT
GTAACACAGCATACTTATGATAGTATAGTGTTAGTAGTATAGTTAGTAGA
GTTAAGTATACCATATGTCATACAAACCCCGGGGTTACTAGCGTATTGCC
CCCCCCCCACACTTAGCCCCGATTTTGGCCTATCGATGGTTTGGGAGGTG
TGCGTCTCTTCTAACGAACCGCAGGGCCCTTCGACTCGTCCAACCCACGG
TTTCAATGGGTGTAGCGGCGTGGTTTTATTCCATAGAACGGTTAAAACCT
TGTCCTGTGGCAGGAGAGCCAAGGTCGGTGAAATCGTTCATGTTGTTTGC
TTTTCGCGTTTTGGGTGGTACCCGTACATTGGCTAAAACAAACACAGCTC
TACTACTGTTGTTCCGTCGTACAATGTTTTTTTTTCTATGGTACAGGACA
CAAAGTATGTTCCCTCCCACTGATTATGCTGTATGGTATACACATCGGGC
ACTGTCGTATAAAGAGGTTTCGATGTGTGCGGGATAAATCTGTTTTTCGA
ATCCTCTCGCTCTTTTGCTTGTGTGATTGCATGTTTGTTATAATCGTTGA
TTTGTTTCTTTGTGTGGATAAAAAAAATATAGCGTGTTCGATTCCACCGG
AGATATCTTACGTGCCAGGCAGGTACAATACAGCAAATAGACTGGGTGCC
ACGCGTCTTATTTTTAAACGGGTGATAGTCTGCCTCGATTTTTGCGCTCG
ACGGGGGAGCGTATGCCGCCGCGCTCTCGGGAGCGTAGGCCGGACAAGCT
GACCCTACCTCCCCCCCTCCGTGATGATGATTTTGAACCCGTACGCGATG
CAAGAACAACACCAATGCAGAATAGGTACCTTGTACATATTATAGCATAG
TTTTTTTTAGCGTTTTATGTACCCCACAAGATGTATAGAGTATAGACCTT
CCCCCCGTTGGCAAACATGCGTATAGTATTAAATATTGTAGATGGCCCGG
CCGGTAAAACACCATTACTATTTAACAAATAGTATAAAACTCAATGGCAC
CCCCCTCTCTCGTTGTTGCTCTGCCATAACATTAACAAAAAATGTGCAAA
AAATGCCTCTTTCAGCACTTCGGGAAACCCGCCTGTTCTGCTCAAGTGCG
GCCACGTACTGCTGAGATCGAGCGTCGGCGAGTTGGCCCGCAATGCTTCT
AAGTTCAAGTGTCCGACGTGTCGCGTGGAGCAGACGGAAAACGACACGAT
GATCCTGACTCTTTGAAGACGGTGTGGCACGGTACAGCATGGCGTTCCTT
CGAGTGTTGATTTGATTGATTGATTGATTGATTTGATTGATGAATGGATT
GATTGATTTGATTGATTCGATTAATTGATTGGTTGATTGATTTGATTGAT
TGTTTTTTGGTTGGCTCGTAATTTGGTTGGTTGGTTGGTCCTGTCGTGGA
GGTGCCCACCGAAGAAGGGAGGGGGCATGCGCTCGCGTTCGCTCGCTTGT
CTGTTTCTGTTGTCGTGATGCAAGCAAGCGGTCTTGGCCCCTGGCCCTGG
TTGAGTTACTATCCGGGGTTCCAGCCGCCGGTGGCCGTTTTATATTTGCG
ACGGTTCGCGGGGGGTGCGACGGGG
back to top

Coding sequence (CDS) from alignment at D-herbacea_F_contig116:420656..424530-

>mRNA_D-herbacea_F_contig116.1179.1 ID=mRNA_D-herbacea_F_contig116.1179.1|Name=mRNA_D-herbacea_F_contig116.1179.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=558bp|location=Sequence derived from alignment at D-herbacea_F_contig116:420656..424530- (Desmarestia herbacea DmunF female)
ATGGCGGCCGCGAGGCGAGGCTCGAACCAGGCCTGGGACGGTATGCAGGA
GCTCCACGTGGACTTAGCTCTGCCCCCCGGCATGCGCTACCACAGCATGT
TTGCTTGTCCTGTGACAGGAGAGCCAAGATGGCGGCCGCGAGGCGAGGCT
CGAACCAGGCCTGGGACGGTATGCAGGAGCTCCACGTGGACTTAGCTCTG
CCCCCCGGCATGCGCTACCACAGCATGTTTGCTTGTCCTGTGACAGGAGA
GCCAAGCACTTCGGGAAACCCGCCTGTTCTGCTCAAGTGCGGCCACGTAC
TGCTGAGATCGAGCGTCGGCGAGTTGGCCCGCAATGCTTCTAAGTTCAAG
TGTCCGACGTGTCGCGTGGAGCAGACGGAAAACGACACGATGATCCTGAC
TCTTTGACACTTCGGGAAACCCGCCTGTTCTGCTCAAGTGCGGCCACGTA
CTGCTGAGATCGAGCGTCGGCGAGTTGGCCCGCAATGCTTCTAAGTTCAA
GTGTCCGACGTGTCGCGTGGAGCAGACGGAAAACGACACGATGATCCTGA
CTCTTTGA
back to top