mRNA_D-herbacea_F_contig116.1177.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig116.1177.1
Unique NamemRNA_D-herbacea_F_contig116.1177.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig116.1177.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig116contigD-herbacea_F_contig116:404634..405037 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size406
Cds size402
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927553.3411005-CDS-D-herbacea_F_contig116:404633..4050351622927553.3411005-CDS-D-herbacea_F_contig116:404633..405035Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig116 404634..405035 +
1690790228.926168-CDS-D-herbacea_F_contig116:404633..4050351690790228.926168-CDS-D-herbacea_F_contig116:404633..405035Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig116 404634..405035 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig116.1177.1prot_D-herbacea_F_contig116.1177.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig116 404634..405035 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig116.1177.1

>prot_D-herbacea_F_contig116.1177.1 ID=prot_D-herbacea_F_contig116.1177.1|Name=mRNA_D-herbacea_F_contig116.1177.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=134bp
RIDFSPAQGSTLTHSSSSTLVESKLTHALSLSRARCITRWKLVSTLIAVR
RESNPELHESKLIHAVSLSLSLAFYYAMEVGFHFFCCPPGIEPRTSAKEG
NYYTNNYPSNRPLGSLHATKIIKYVVLTSVVVES
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mRNA from alignment at D-herbacea_F_contig116:404634..405037+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig116.1177.1 ID=mRNA_D-herbacea_F_contig116.1177.1|Name=mRNA_D-herbacea_F_contig116.1177.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=404bp|location=Sequence derived from alignment at D-herbacea_F_contig116:404634..405037+ (Desmarestia herbacea DmunF female)
CGCATTGATTTTAGTCCCGCACAGGGTTCGACACTCACACATAGTAGCTC
GTCGACTTTGGTCGAGTCAAAGCTCACTCATGCTCTCTCTCTCTCGCGCG
CGCGTTGTATTACGCGATGGAAGTTGGTTTCCACTTTAATTGCTGTCCGC
CGGGAATCGAACCCCGAACTCCATGAGTCAAAGCTTATTCATGCTGTCTC
TCTCTCTCTCTCTCTCGCGTTTTATTACGCGATGGAAGTTGGTTTCCACT
TTTTTTGCTGTCCACCGGGAATCGAACCCCGAACTTCCGCCAAGGAAGGC
AACTATTATACGAATAACTATCCTAGTAATAGACCACTCGGAAGCCTACA
TGCCACGAAAATAATAAAATATGTTGTTTTAACTTCTGTTGTTGTGGAGT
CTTC
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Coding sequence (CDS) from alignment at D-herbacea_F_contig116:404634..405037+

>mRNA_D-herbacea_F_contig116.1177.1 ID=mRNA_D-herbacea_F_contig116.1177.1|Name=mRNA_D-herbacea_F_contig116.1177.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=804bp|location=Sequence derived from alignment at D-herbacea_F_contig116:404634..405037+ (Desmarestia herbacea DmunF female)
CGCATTGATTTTAGTCCCGCACAGGGTTCGACACTCACACATAGTAGCTC
GTCGACTTTGGTCGAGTCAAAGCTCACTCATGCTCTCTCTCTCTCGCGCG
CGCGTTGTATTACGCGATGGAAGTTGGTTTCCACTTTAATTGCTGTCCGC
CGGGAATCGAACCCCGAACTCCATGAGTCAAAGCTTATTCATGCTGTCTC
TCTCTCTCTCTCTCTCGCGTTTTATTACGCGATGGAAGTTGGTTTCCACT
TTTTTTGCTGTCCACCGGGAATCGAACCCCGAACTTCCGCCAAGGAAGGC
AACTATTATACGAATAACTATCCTAGTAATAGACCACTCGGAAGCCTACA
TGCCACGAAAATAATAAAATATGTTGTTTTAACTTCTGTTGTTGTGGAGT
CTCGCATTGATTTTAGTCCCGCACAGGGTTCGACACTCACACATAGTAGC
TCGTCGACTTTGGTCGAGTCAAAGCTCACTCATGCTCTCTCTCTCTCGCG
CGCGCGTTGTATTACGCGATGGAAGTTGGTTTCCACTTTAATTGCTGTCC
GCCGGGAATCGAACCCCGAACTCCATGAGTCAAAGCTTATTCATGCTGTC
TCTCTCTCTCTCTCTCTCGCGTTTTATTACGCGATGGAAGTTGGTTTCCA
CTTTTTTTGCTGTCCACCGGGAATCGAACCCCGAACTTCCGCCAAGGAAG
GCAACTATTATACGAATAACTATCCTAGTAATAGACCACTCGGAAGCCTA
CATGCCACGAAAATAATAAAATATGTTGTTTTAACTTCTGTTGTTGTGGA
GTCT
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