mRNA_D-herbacea_F_contig116.1174.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig116.1174.1
Unique NamemRNA_D-herbacea_F_contig116.1174.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
[Close]
BLAST of mRNA_D-herbacea_F_contig116.1174.1 vs. uniprot
Match: A0A6H5KI11_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI11_9PHAE)

HSP 1 Score: 434 bits (1116), Expect = 6.470e-142
Identity = 211/224 (94.20%), Postives = 218/224 (97.32%), Query Frame = 1 
Query:  352 MSASIEQRNQDATCYTGNLDSAVTEALLWEIMIQAGPVANVHMPKDKVTGVHQGFGFVEFRSEDDAEYAIKIMNMVKLFGKPLRVNKASQDRKANDVGANLFVGQLDGDVDEKMLYDTFSAFGFITQTPKVMRDPDTGMSKGYGFVSYDGFDASDMAIECMHNQYLCNRQISVQYAYKKDSRGERHGGQAERLLASNNPSKFKVHTLFSVAPGKIEGTVSAGTG 1023
            MSASIEQRNQDATCYTGNLDS+VTEALLWE+MIQAGPVANVHMPKDK+TGVHQGFGFVEFRSEDDAEYAIKIMNMVKLFGKPLRVNKASQDRKANDVGANLF+GQLD DVDEKMLYDTFSAFGFITQTPKVMRDPDTGMSKGYGFVSYDGF+ASD AIECMHNQYLCNRQISVQYAYKKD+RGERHGGQAERLLASNNPSKFKVHTLFSVAPGKIEG+  A  G
Sbjct:    1 MSASIEQRNQDATCYTGNLDSSVTEALLWELMIQAGPVANVHMPKDKITGVHQGFGFVEFRSEDDAEYAIKIMNMVKLFGKPLRVNKASQDRKANDVGANLFIGQLDPDVDEKMLYDTFSAFGFITQTPKVMRDPDTGMSKGYGFVSYDGFEASDKAIECMHNQYLCNRQISVQYAYKKDTRGERHGGQAERLLASNNPSKFKVHTLFSVAPGKIEGSAPAAGG 224
[Close]
BLAST of mRNA_D-herbacea_F_contig116.1174.1 vs. uniprot
Match: D8LT41_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT41_ECTSI)

HSP 1 Score: 434 bits (1117), Expect = 4.040e-140
Identity = 214/231 (92.64%), Postives = 221/231 (95.67%), Query Frame = 1 
Query:  352 MSASIEQRNQDATCYTGNLDSAVTEALLWEIMIQAGPVANVHMPKDKVTGVHQGFGFVEFRSEDDAEYAIKIMNMVKLFGKPLRVNKASQDRKANDVGANLFVGQLDGDVDEKMLYDTFSAFGFITQTPKVMRDPDTGMSKGYGFVSYDGFDASDMAIECMHNQYLCNRQISVQYAYKKDSRGERHGGQAERLLASNNPSKFKVHTLFSVAPGKIEGTVSA--GTGGRTAG 1038
            MSASIEQRNQDATCYTGNLDS+VTEALLWE+MIQAGPVANVHMPKDK+TGVHQGFGFVEFRSEDDAEYAIKIMNMVKLFGKPLRVNKASQDRKANDVGANLF+GQLD DVDEKMLYDTFSAFGFITQTPKVMRDPDTGMSKGYGFVSYDGF+ASD AIECMHNQYLCNRQISVQYAYKKD+RGERHGGQAERLLASNNPSKFKVHTLFSVAPGKIEG+  A  G GG   G
Sbjct:    1 MSASIEQRNQDATCYTGNLDSSVTEALLWELMIQAGPVANVHMPKDKITGVHQGFGFVEFRSEDDAEYAIKIMNMVKLFGKPLRVNKASQDRKANDVGANLFIGQLDPDVDEKMLYDTFSAFGFITQTPKVMRDPDTGMSKGYGFVSYDGFEASDKAIECMHNQYLCNRQISVQYAYKKDTRGERHGGQAERLLASNNPSKFKVHTLFSVAPGKIEGSAPAAGGNGGMGMG 231
[Close]
BLAST of mRNA_D-herbacea_F_contig116.1174.1 vs. uniprot
Match: A0A835YPU5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPU5_9STRA)

HSP 1 Score: 365 bits (937), Expect = 1.550e-114
Identity = 172/217 (79.26%), Postives = 194/217 (89.40%), Query Frame = 1 
Query:  352 MSASIEQRNQDATCYTGNLDSAVTEALLWEIMIQAGPVANVHMPKDKVTGVHQGFGFVEFRSEDDAEYAIKIMNMVKLFGKPLRVNKASQDRKANDVGANLFVGQLDGDVDEKMLYDTFSAFGFITQTPKVMRDPDTGMSKGYGFVSYDGFDASDMAIECMHNQYLCNRQISVQYAYKKDSRGERHGGQAERLLASNNPSKFKVHTLFSVAPGKIEG 1002
            MSA+IEQRNQDATCY GNLD A TE LLWE+MIQAGPV NVHMPKDKVT  HQG+GFVEFRSE+DAEYAIKI+NMVKLFGKPLRVNKAS DRKA DVGANLF+GQLD +VDEK+LYDTFSAFGFIT TPKVMRDP+TG SKGYGFVSYDGF+ASD+AIECM+ Q+LCNRQI VQYA+K+DS GERHG  AERLLA+NNP + K HT+F+   G+++G
Sbjct:    1 MSAAIEQRNQDATCYCGNLDEAATEELLWELMIQAGPVVNVHMPKDKVTNTHQGYGFVEFRSEEDAEYAIKILNMVKLFGKPLRVNKASSDRKAQDVGANLFIGQLDPEVDEKLLYDTFSAFGFITNTPKVMRDPETGASKGYGFVSYDGFEASDLAIECMNGQFLCNRQIVVQYAFKRDSHGERHGSLAERLLAANNPLRLKPHTMFASQEGEVQG 217
[Close]
BLAST of mRNA_D-herbacea_F_contig116.1174.1 vs. uniprot
Match: A0A7S3ZVH1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZVH1_9STRA)

HSP 1 Score: 342 bits (878), Expect = 5.240e-108
Identity = 160/218 (73.39%), Postives = 190/218 (87.16%), Query Frame = 1 
Query:  364 IEQRNQDATCYTGNLDSAVTEALLWEIMIQAGPVANVHMPKDKVTGVHQGFGFVEFRSEDDAEYAIKIMNMVKLFGKPLRVNKASQDRKANDVGANLFVGQLDGDVDEKMLYDTFSAFGFITQTPKVMRDPDTGMSKGYGFVSYDGFDASDMAIECMHNQYLCNRQISVQYAYKKDSRGERHGGQAERLLASNNPSK-FKVHTLFSVAPGKIEGTVSA 1014
            +EQRNQDATCY GNLD  +TE LLWE+M+QAGPV+NVH+P+DKVTG HQG+GFVEFRSE+DA+YA+K+MNMVKLFGKPLRVNKASQDR+A +VGANLFVG LDGDVDEK+LYDTFSAFG I++TPKVMRDPDTG SKGYGFVSYD F+ASD+AIECMH Q+LCN+Q+ V YA+K+DS+ ERHG QAERLLA+NNP+   + HT+F      + G  SA
Sbjct:    6 VEQRNQDATCYVGNLDEQLTEELLWEMMLQAGPVSNVHLPRDKVTGSHQGYGFVEFRSEEDADYALKVMNMVKLFGKPLRVNKASQDRRAVEVGANLFVGGLDGDVDEKLLYDTFSAFGTISETPKVMRDPDTGGSKGYGFVSYDSFEASDLAIECMHGQFLCNKQVQVGYAFKRDSKTERHGSQAERLLAANNPNNAVQPHTMFGTGAPAVAGAFSA 223
[Close]
BLAST of mRNA_D-herbacea_F_contig116.1174.1 vs. uniprot
Match: F0YAQ8_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YAQ8_AURAN)

HSP 1 Score: 343 bits (881), Expect = 1.300e-107
Identity = 157/213 (73.71%), Postives = 185/213 (86.85%), Query Frame = 1 
Query:  364 IEQRNQDATCYTGNLDSAVTEALLWEIMIQAGPVANVHMPKDKVTGVHQGFGFVEFRSEDDAEYAIKIMNMVKLFGKPLRVNKASQDRKANDVGANLFVGQLDGDVDEKMLYDTFSAFGFITQTPKVMRDPDTGMSKGYGFVSYDGFDASDMAIECMHNQYLCNRQISVQYAYKKDSRGERHGGQAERLLASNNPSKFKVHTLFSVAPGKIEG 1002
            +EQRNQDATCY GNLD  +TE LLWE+M+QAGP+ NVH+P+DKVTG HQG+GFVEFRSE+DA+YA+K+MNMVKLFGKPLRVNKASQD+K  +VGANLFVG LD DVDEK+LYDTFSAFG IT+TPK+MRDPDTG SKG+GFVSYD F+ASD+AIECMHNQ+LCN+Q+ V YA+K+DS+ ERHG QAERLLA+NNP   K H +F   PG   G
Sbjct:    6 VEQRNQDATCYVGNLDEQLTEELLWEMMLQAGPIGNVHLPRDKVTGSHQGYGFVEFRSEEDADYALKVMNMVKLFGKPLRVNKASQDKKTLEVGANLFVGGLDVDVDEKLLYDTFSAFGTITETPKIMRDPDTGNSKGFGFVSYDSFEASDLAIECMHNQFLCNKQVQVGYAFKRDSKTERHGSQAERLLAANNPMSAKPHAMFGTGPGDAMG 218
[Close]
BLAST of mRNA_D-herbacea_F_contig116.1174.1 vs. uniprot
Match: A0A7S2SH37_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SH37_9STRA)

HSP 1 Score: 333 bits (854), Expect = 9.360e-105
Identity = 168/246 (68.29%), Postives = 195/246 (79.27%), Query Frame = 1 
Query:  352 MSASIEQRNQDATCYTGNLDSAVTEALLWEIMIQAGPVANVHMPKDKVTGVHQGFGFVEFRSEDDAEYAIKIMNMVKLFGKPLRVNKASQDRKANDVGANLFVGQLDGDVDEKMLYDTFSAFGFITQTPKVMRDPDTGMSKGYGFVSYDGFDASDMAIECMHNQYLCNRQISVQYAYKKDSRGERHGGQAERLLASNNP--SKFKVHTLFSVAPGKIEGTVSAGTGGRTAGAPPPLXXXPSSGMPP 1083
            MSA+IEQRNQDATCY GNLD  V E LLWE+M+QAGPV ++HMPKDKVT  HQGFGFVEFRSE+DA+YAIKIMNMVKLF KP+RVNKASQDRK  DVGANLF+G LD  VDEK+LYDTFSAFG +T  PKVMRDPDTG+SKG+GFVSYD F+A+D+AIECM+ Q+L NR I VQ+A+K+DS+GERHG QAER+LA+NNP   +   HT+F+  P    G  S G GG      PPL    S  MPP
Sbjct:    1 MSAAIEQRNQDATCYCGNLDDQVEEELLWELMLQAGPVVSLHMPKDKVTNSHQGFGFVEFRSEEDADYAIKIMNMVKLFDKPIRVNKASQDRKTMDVGANLFIGNLDAQVDEKLLYDTFSAFGGLTDQPKVMRDPDTGLSKGFGFVSYDSFEAADLAIECMNGQFLSNRAIQVQFAFKRDSQGERHGSQAERMLAANNPLARRMAPHTMFAAGP---PGMPSGGMGG------PPLM---SQAMPP 234
[Close]
BLAST of mRNA_D-herbacea_F_contig116.1174.1 vs. uniprot
Match: A0A6A4C3Q0_9STRA (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A4C3Q0_9STRA)

HSP 1 Score: 323 bits (829), Expect = 3.050e-101
Identity = 150/213 (70.42%), Postives = 181/213 (84.98%), Query Frame = 1 
Query:  352 MSASIEQRNQDATCYTGNLDSAVTEALLWEIMIQAGPVANVHMPKDKVTGVHQGFGFVEFRSEDDAEYAIKIMNMVKLFGKPLRVNKASQDRKANDVGANLFVGQLDGDVDEKMLYDTFSAFGFITQTPKVMRDPDTGMSKGYGFVSYDGFDASDMAIECMHNQYLCNRQISVQYAYKKDSRGERHGGQAERLLASNNPSKFKVHTLFSVAPG 990
            MSA+IEQRNQDAT Y GNLD  V+E LLWE+M+QAG V NVHMP+DKVTG HQ +GFVEFR+E+ AEYA+K++NMV+LFGKP+RV KAS DRK  DVGANLF+G LD +VDEK+LYDTFSAFG I +TPKVMRDPD+  S+G+GFVS+D F+A+D+AIECMH QYLCNRQ+ VQ+A+KKDSR ERHG +AERLLA  NP K + HT+F+  PG
Sbjct:    1 MSAAIEQRNQDATVYVGNLDDRVSEELLWELMLQAGSVCNVHMPRDKVTGSHQNYGFVEFRAEECAEYAVKVLNMVQLFGKPVRVKKASSDRKNVDVGANLFLGNLDPEVDEKLLYDTFSAFGGIVETPKVMRDPDSQASRGFGFVSFDSFEAADLAIECMHGQYLCNRQVVVQFAFKKDSRNERHGSEAERLLAQRNPDKLQPHTMFAFTPG 213
[Close]
BLAST of mRNA_D-herbacea_F_contig116.1174.1 vs. uniprot
Match: A0A0W8D7L6_PHYNI (Splicing factor 3B subunit 4 n=11 Tax=Peronosporaceae TaxID=4777 RepID=A0A0W8D7L6_PHYNI)

HSP 1 Score: 323 bits (827), Expect = 8.200e-101
Identity = 149/217 (68.66%), Postives = 180/217 (82.95%), Query Frame = 1 
Query:  352 MSASIEQRNQDATCYTGNLDSAVTEALLWEIMIQAGPVANVHMPKDKVTGVHQGFGFVEFRSEDDAEYAIKIMNMVKLFGKPLRVNKASQDRKANDVGANLFVGQLDGDVDEKMLYDTFSAFGFITQTPKVMRDPDTGMSKGYGFVSYDGFDASDMAIECMHNQYLCNRQISVQYAYKKDSRGERHGGQAERLLASNNPSKFKVHTLFSVAPGKIEG 1002
            MSA+IEQRNQDAT Y GNLD  VTE LLWE+M+QAG V NVHMP+DKVTG HQ +GFVEFR+E+ AEYA+K++NM++L+G+ +RV KAS DRK  DVGANLF+G LD +VDEK+LYDTFSAFG I +TPK+MRDPDT  SKG+GFVS+D F+A+D+AIECMH QYLCNRQ+ VQYA+KKDS  ERHG +AERLLA  NP+K K HT+F+   G   G
Sbjct:    1 MSAAIEQRNQDATVYVGNLDDRVTEELLWELMLQAGSVCNVHMPRDKVTGAHQNYGFVEFRTEECAEYAVKVLNMIQLYGRVIRVKKASNDRKNLDVGANLFIGNLDPEVDEKLLYDTFSAFGGIVETPKIMRDPDTKASKGFGFVSFDSFEAADLAIECMHGQYLCNRQVVVQYAFKKDSHNERHGSEAERLLAQRNPNKLKPHTMFAFTAGAAPG 217
[Close]
BLAST of mRNA_D-herbacea_F_contig116.1174.1 vs. uniprot
Match: A0A024GK10_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GK10_9STRA)

HSP 1 Score: 321 bits (822), Expect = 6.300e-100
Identity = 150/211 (71.09%), Postives = 180/211 (85.31%), Query Frame = 1 
Query:  352 MSASIEQRNQDATCYTGNLDSAVTEALLWEIMIQAGPVANVHMPKDKVTGVHQGFGFVEFRSEDDAEYAIKIMNMVKLFGKPLRVNKASQDRKANDVGANLFVGQLDGDVDEKMLYDTFSAFGFITQTPKVMRDPDTGMSKGYGFVSYDGFDASDMAIECMHNQYLCNRQISVQYAYKKDSRGERHGGQAERLLASNNPSKFKVHTLFSVA 984
            MSA+IEQRNQDAT Y GNLD  V+E LLWE+M+QAG V NVHMP+DKVT  HQ +GFVEFR+E+ AEYAIKIMNM++++GKP+RV KASQD+K  D+GANLF+G LD +VDEK+LYDTFSAFG I +TPK+MRDPDT  S+G+GF+SYD F+ASD+AIECM+ QYLCNRQI VQYA+KKDS  ERHG QAERLLA +NP+K K HT F+ A
Sbjct:    1 MSAAIEQRNQDATVYIGNLDDKVSEELLWELMLQAGSVVNVHMPRDKVTTTHQNYGFVEFRTEECAEYAIKIMNMIQVYGKPIRVKKASQDKKTLDIGANLFIGNLDPEVDEKLLYDTFSAFGGIIETPKIMRDPDTKHSRGFGFISYDAFEASDLAIECMNAQYLCNRQIVVQYAFKKDSNNERHGSQAERLLAQSNPNKLKPHTRFAFA 211
[Close]
BLAST of mRNA_D-herbacea_F_contig116.1174.1 vs. uniprot
Match: A0A484EDR7_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EDR7_BRELC)

HSP 1 Score: 319 bits (818), Expect = 1.520e-99
Identity = 146/217 (67.28%), Postives = 180/217 (82.95%), Query Frame = 1 
Query:  352 MSASIEQRNQDATCYTGNLDSAVTEALLWEIMIQAGPVANVHMPKDKVTGVHQGFGFVEFRSEDDAEYAIKIMNMVKLFGKPLRVNKASQDRKANDVGANLFVGQLDGDVDEKMLYDTFSAFGFITQTPKVMRDPDTGMSKGYGFVSYDGFDASDMAIECMHNQYLCNRQISVQYAYKKDSRGERHGGQAERLLASNNPSKFKVHTLFSVAPGKIEG 1002
            MSA IEQRNQDAT Y GNLD  VTE LLWE+M+QAG V NVHMP+DKV+G HQ +GFVEFR+E+ AEYA+K++NM++L+G+ +RV KAS DRK+ DVGANLF+G LD +VDEK+LYDTFSAFG I +TPK+MRDPD+  SKG+GF+S+D F+A+D+AIECMH QYLCNRQ+ VQYA+KKDS  ERHG +AERLLA  NP+K K HT+F+   G   G
Sbjct:    1 MSAGIEQRNQDATVYVGNLDDRVTEELLWELMLQAGSVCNVHMPRDKVSGAHQNYGFVEFRAEECAEYAVKVLNMIQLYGRVIRVKKASNDRKSLDVGANLFIGNLDPEVDEKLLYDTFSAFGGIVETPKIMRDPDSKASKGFGFISFDSFEAADLAIECMHGQYLCNRQVVVQYAFKKDSHNERHGSEAERLLAQTNPNKLKPHTMFAFTTGAPPG 217
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig116.1174.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KI11_9PHAE6.470e-14294.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LT41_ECTSI4.040e-14092.64Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YPU5_9STRA1.550e-11479.26Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S3ZVH1_9STRA5.240e-10873.39Hypothetical protein (Fragment) n=1 Tax=Pelagomona... [more]
F0YAQ8_AURAN1.300e-10773.71Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S2SH37_9STRA9.360e-10568.29Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A6A4C3Q0_9STRA3.050e-10170.42Uncharacterized protein n=3 Tax=Phytophthora TaxID... [more]
A0A0W8D7L6_PHYNI8.200e-10168.66Splicing factor 3B subunit 4 n=11 Tax=Peronosporac... [more]
A0A024GK10_9STRA6.300e-10071.09Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]
A0A484EDR7_BRELC1.520e-9967.28Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig116contigD-herbacea_F_contig116:331129..344439 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score436.4
Seed ortholog evalue2.1e-119
Seed eggNOG ortholog2880.D8LT41
Preferred nameSF3B4
KEGG koko:K07951,ko:K12831
KEGG Pathwayko03040,map03040
KEGG ModuleM00352
Hectar predicted targeting categoryother localisation
GOsGO:0000375,GO:0000377,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005686,GO:0005689,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010604,GO:0010628,GO:0016070,GO:0016071,GO:0019219,GO:0019222,GO:0030532,GO:0031323,GO:0031325,GO:0031974,GO:0031981,GO:0032991,GO:0033120,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043484,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045292,GO:0045935,GO:0046483,GO:0048024,GO:0048026,GO:0048518,GO:0048522,GO:0050684,GO:0050685,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0065007,GO:0070013,GO:0071004,GO:0071010,GO:0071704,GO:0080090,GO:0090304,GO:0097159,GO:0097525,GO:0120114,GO:1901360,GO:1901363,GO:1903311,GO:1903313,GO:1990904
EggNOG free text desc.RNA splicing
EggNOG OGsKOG0131@1,KOG0131@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03036,ko03041,ko04031,ko04147
Exons11
Model size2531
Cds size1743
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927555.430439-UTR-D-herbacea_F_contig116:331128..3311751622927555.430439-UTR-D-herbacea_F_contig116:331128..331175Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig116 331129..331175 +
1690790230.0417006-UTR-D-herbacea_F_contig116:331128..3311751690790230.0417006-UTR-D-herbacea_F_contig116:331128..331175Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig116 331129..331175 +
1622927555.4427812-UTR-D-herbacea_F_contig116:331656..3319601622927555.4427812-UTR-D-herbacea_F_contig116:331656..331960Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig116 331657..331960 +
1690790230.0571353-UTR-D-herbacea_F_contig116:331656..3319601690790230.0571353-UTR-D-herbacea_F_contig116:331656..331960Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig116 331657..331960 +
1622927555.5898-UTR-D-herbacea_F_contig116:344002..3444391622927555.5898-UTR-D-herbacea_F_contig116:344002..344439Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig116 344003..344439 +
1690790230.1596148-UTR-D-herbacea_F_contig116:344002..3444391690790230.1596148-UTR-D-herbacea_F_contig116:344002..344439Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig116 344003..344439 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927555.4595854-CDS-D-herbacea_F_contig116:331960..3320501622927555.4595854-CDS-D-herbacea_F_contig116:331960..332050Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig116 331961..332050 +
1690790230.0660465-CDS-D-herbacea_F_contig116:331960..3320501690790230.0660465-CDS-D-herbacea_F_contig116:331960..332050Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig116 331961..332050 +
1622927555.4740498-CDS-D-herbacea_F_contig116:336419..3365421622927555.4740498-CDS-D-herbacea_F_contig116:336419..336542Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig116 336420..336542 +
1690790230.0751338-CDS-D-herbacea_F_contig116:336419..3365421690790230.0751338-CDS-D-herbacea_F_contig116:336419..336542Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig116 336420..336542 +
1622927555.4881227-CDS-D-herbacea_F_contig116:336885..3369511622927555.4881227-CDS-D-herbacea_F_contig116:336885..336951Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig116 336886..336951 +
1690790230.0842853-CDS-D-herbacea_F_contig116:336885..3369511690790230.0842853-CDS-D-herbacea_F_contig116:336885..336951Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig116 336886..336951 +
1622927555.5029151-CDS-D-herbacea_F_contig116:338241..3384111622927555.5029151-CDS-D-herbacea_F_contig116:338241..338411Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig116 338242..338411 +
1690790230.0933785-CDS-D-herbacea_F_contig116:338241..3384111690790230.0933785-CDS-D-herbacea_F_contig116:338241..338411Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig116 338242..338411 +
1622927555.5149255-CDS-D-herbacea_F_contig116:339291..3394091622927555.5149255-CDS-D-herbacea_F_contig116:339291..339409Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig116 339292..339409 +
1690790230.1026406-CDS-D-herbacea_F_contig116:339291..3394091690790230.1026406-CDS-D-herbacea_F_contig116:339291..339409Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig116 339292..339409 +
1622927555.5250788-CDS-D-herbacea_F_contig116:341056..3412061622927555.5250788-CDS-D-herbacea_F_contig116:341056..341206Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig116 341057..341206 +
1690790230.1108308-CDS-D-herbacea_F_contig116:341056..3412061690790230.1108308-CDS-D-herbacea_F_contig116:341056..341206Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig116 341057..341206 +
1622927555.537353-CDS-D-herbacea_F_contig116:341872..3421721622927555.537353-CDS-D-herbacea_F_contig116:341872..342172Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig116 341873..342172 +
1690790230.1219425-CDS-D-herbacea_F_contig116:341872..3421721690790230.1219425-CDS-D-herbacea_F_contig116:341872..342172Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig116 341873..342172 +
1622927555.5526085-CDS-D-herbacea_F_contig116:342596..3430441622927555.5526085-CDS-D-herbacea_F_contig116:342596..343044Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig116 342597..343044 +
1690790230.1298263-CDS-D-herbacea_F_contig116:342596..3430441690790230.1298263-CDS-D-herbacea_F_contig116:342596..343044Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig116 342597..343044 +
1622927555.5686977-CDS-D-herbacea_F_contig116:343359..3436221622927555.5686977-CDS-D-herbacea_F_contig116:343359..343622Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig116 343360..343622 +
1690790230.1413012-CDS-D-herbacea_F_contig116:343359..3436221690790230.1413012-CDS-D-herbacea_F_contig116:343359..343622Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig116 343360..343622 +
1622927555.5803814-CDS-D-herbacea_F_contig116:343987..3440021622927555.5803814-CDS-D-herbacea_F_contig116:343987..344002Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig116 343988..344002 +
1690790230.1517725-CDS-D-herbacea_F_contig116:343987..3440021690790230.1517725-CDS-D-herbacea_F_contig116:343987..344002Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig116 343988..344002 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig116.1174.1prot_D-herbacea_F_contig116.1174.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig116 331961..344002 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig116.1174.1

>prot_D-herbacea_F_contig116.1174.1 ID=prot_D-herbacea_F_contig116.1174.1|Name=mRNA_D-herbacea_F_contig116.1174.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=581bp
MSASIEQRNQDATCYTGNLDSAVTEALLWEIMIQAGPVANVHMPKDKVTG
VHQGFGFVEFRSEDDAEYAIKIMNMVKLFGKPLRVNKASQDRKANDVGAN
LFVGQLDGDVDEKMLYDTFSAFGFITQTPKVMRDPDTGMSKGYGFVSYDG
FDASDMAIECMHNQYLCNRQISVQYAYKKDSRGERHGGQAERLLASNNPS
KFKVHTLFSVAPGKIEGTVSAGTGGRTAGAPPPLPPPPSSGMPPLPPLPP
GMPPPPPPSPGMPPLPPGTTLPYMPHQSSGGAPPPPPPGQGGMGTPGMPP
PPPSGYGGYSPHMPPHMRMGMGRGMPPMGGHMGMPMGMQRGNNYMYGMHG
GQGGGRPPMMGMPPPPPPPNMNMGRPPPLPPTPGQQAPPPPPPPSSSPAA
PPPPPPPSSSASDNGPPPPPPPGAPGANSGAPPPPPTGREAAGGVEGGGG
PPPPPPPPSVNGRRMGEPEDHDSYSRGNGPPPPPPPHGGMGGRGMGGGPD
GGRGMGMGMGMGGRGGEGERGGGGGAWGKGGRDDAPPSARGGGAPRVPQQ
QGGRGMGRGPPPPPPPGGGMRQNMHQQDRQ*
back to top

mRNA from alignment at D-herbacea_F_contig116:331129..344439+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig116.1174.1 ID=mRNA_D-herbacea_F_contig116.1174.1|Name=mRNA_D-herbacea_F_contig116.1174.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=13311bp|location=Sequence derived from alignment at D-herbacea_F_contig116:331129..344439+ (Desmarestia herbacea DmunF female)
CGAGCGTGTATCCTCAAGGCGGAGAAGGGAGCCCGCTGCGCTGCTAGGTG
AAATACATGCTGTTGCTAGGCGATTCGATGTGTTCTATGACTTTGCTTTT
GGGTAATCCACCTCTCTGTTTTCTGTCCTTTGTTTTCGCACGAAAAGCTA
CGGACGGAGGGTTCCGTTTGTTTCAATGTTCAAGCCTACAGACGCCAGTA
CAGTAGTAGTAGTAGTCAGTAGTGTGCACAGGATTGCTTGTGCCCTGCTT
TTTACCATGCTCTCCCGCCGATTGCCCCTTCGTCTGGCAGATGAGTTGCC
ATCTCCTTTGCGTTGCGTGGAAGCCGCCGTTGTATTCGCCAGAACGAGCA
AGTGGACGGACGATGCGCACGTACCCATGTCGAAACCTCGTACAACTACC
CAAACCTACTCAAGATTGTGTTTTTGACACCTTGAGCACCTGAACAAACT
CCATCCCTTCAGTCATCCCCGACATCTTCTCCCGATTTTGTTTTCGTGCA
ACTCTTGTGGTCTCGTGAAAAATACCAGGTGGTGCCCAGCTGCACTCCTT
AGGTGCTGTGCACACTCCCGTGTCGGTGCCTATATACGTAGCAACGACGA
GCACATAAAAAACAAGGCCGAGGGTGGGCAAGGCCGCGAAATATTATTAG
GCAAAACAAAGTCAGGAAAACAAGCAGAGAGGAGTGAAGGAAGGACTGCA
GGAGGAGGGAGGCAAAGGACAGATCCAACCTGGCAGGTCACAGGCCGGCA
GGCACGGGGATTTTGAATAGGCTGGGGCTGCTGGGTGCTTTGGTAGGCTG
CTGCTAAACATCGTCTTGCTGGAGTTGTACCTATGTCGGCGTCTATCGAG
CAACGCAACCAGGATGCCACCTGCTACACCGGCAACCTGGATTCTGCTGT
CACAGAGGCACTGCTCTGGGAGGTGTGTAAACAGCAGACAGACTGCCCTA
CTACTGTACGACTACAAGTTGTTCGTACGTATTTATTGGAATAAGAACGC
CGTGAGGTTTGGGGCTGCTGCGTCTTGGGTGTGTGGGTGTGCTCTGCCCA
AATTATAAATGTTTGAGTGGGGTCTTTTGGTTATTGATTTCGCCTCCATT
GGTTCAGCTATGACTGTCATCACGTATCACGGGTGCTTTCCGTTGTGTCT
GTATTTTGGCTACGAGTACAACAGTAGTAGTAGTAATCAACTTTATCATA
TCAACAGACAACAACAACAGTAGTGCCAGATTGCCCTCACAAATGTCCTG
TCTAGCCTGGGGCTAGACCTCTGCAGCCCCAGGTAGGGGGCAGCGCTCTA
ATAGTCCTTATCTGAGGACCAATATAGTCCACGCGACCGAAGTAACACGC
GGTGAAGTTGACGAGCGTCCCCTGGGTGCCGAACCAGTTTCAAACGGAAC
GGATTGACGCATTGTTGGTGTTTATATACGAGTACCAAGGTATGCAACAG
AAACTATTGTATTATTTTACCATCATACAAGGTTTCTGCGCCTTACGCCG
CAACGCTTGAAGAATGAAAGCGAGTTTCCAAGGCCAAAGCAGGATATAGT
AGCCACTTTTAAATATTACAGCGCAGTGGTCTAATGGTTAGGGTGTTGCC
TCTTTTGGCGGAAGTTGGGGGTTCGATTCCCGGTGGCCCTTTTCTGTGCC
ATCTTCCGTCGGGGAAAATGCTTACGAGTACTCACAGGGAAGAAAGTGCT
GCACTCTTCTCGCGATAATATTGTAGGCACGTACCGTGGTGGGAAGGAGG
GAGGAGCGCCTACTACGTGACCCCGGATCTGAGTTTCGAAGAGAGATGGA
GCTACAGTAGTAGAGAAATAATATAGCGAAGATTATAAATGGGACGGGAA
AAAAAGAAAGTGGCACAGACAATCACACCGAAAAAAGGCCCTATCGGAAA
TCGCCTTTTCCGATCCATTGTACAGTAGTAGTAGGCGACAACACCTAAGA
AACTCTTATTTTGGTCGAGGCTCGCGGCTTACTATCATGACAACGTTGGG
CATAGGCTCGTAATAGACTATTACCTACTGGTAGGATTTAGAGTGGTGCT
CTAGGCCGAGAACAAATGCTTGTTGATAGCAGCAATTTCTAACAAACGCG
AAAATTAAAAATCCCAGACTCAGATTCTTATTATAACTTCCAACCATTGC
TGTCGCGTAGTACTGTATTTAACTGTTGTATAAGAAATGGCCTTAACGGG
CGAAAAAAGTCCACAATGGTCAATACGCTACAACAACGAGCGACGCTACA
ACAGCACATAGAACCGGGACAATACCATATGTAAGAAGCGTGAAGCTCCA
AATACGACGGCAGCACTACTCGCGAGTACGTCGAATGTCAACGCACCGCA
ACGGCAACTGAGAGGGGAAAAATGCATCAAAATTTAGGCACAAAACAGAC
AGCATACTCAACCGTCAAGATTTGAAGCACGCTACTGTTGATGTTGTTGT
ATTATGATAAGAGTGCGCGAAGGTTACACGGAGCAACAGCAGGAGAAGTG
GAGAGGAGAGTTGGCTCATGTGGCTGGCAGAGTAATAATGGCTATAGAGA
AGAGCGGCCATATTGCTGCGAATGGAGTGATCTTAATAGGTTATCTACAG
TATGTAAGTAAAAGAAACGTACACAGAGGAACCCTCGAAAGCTCAACTGT
CAAAGTGCAACAAACTATTGCTGTTGTTTCAGCACGAAGGTCACCAGAAA
CAACAATAGCACAGACACGGGATACACTTGGTTCAGGGTGTAGAGGCGAG
GAGGAGGGCTGACTGCCTGGAAGAGAGAGAGATGGTGTGATGCGTGGTGT
GTGCAGAATTCACACCGCGCAGCAAAAAAAGCGAGAATGGTGGAGAGATA
TACATACCCACTCACATCTCACATCGCTCCTATCATACTTCATACTTCAT
ACTTCATAGTACAGACAGAGGGCAACAAACAAACGAAAACGGATGAGCAC
ATCCGAGCCGAGATGTAAATGTCCAGCCGGAACCAATGAGAAATATGGGC
AAATGTTTCGGAGTGGCCGAGCTGTGCCGTCGGGCGCTCTCTCGTGGACT
GGAAGAACATCAAATAATGGAGCGATTCTAGCAAAAAACACAATTGTTAT
AAAGTCTACTGTTGTGTTAGTCTACTGGTAACAGTATGTCCTGTGAGTGC
AGCAGACCGTCTACGCAGACAGCAGACGACAGTAGTCGCTATCGGGTTGT
GGGTGCGGTTATGCTGCCGTGCGGCATCGCCGTGGGTACTCGTGATTACA
AACATGGTAGTACTGCGTTGCAGCAACAGGACAGTCAGTAGTATGATAGT
GGTCGTACAGCCTTGCTGTTTTCTACTCGTATGCTTCTGGTTTGCGGTTG
TTGCCTTGCTATTGTGGGCTGAAAGATTCTACGTGTACAACGGGGCGAGT
ATCACACAGTACAGTGGTATTGTACGAATATTGTCGCTGTTCTGAACCTC
CCCGACAGACCCTTGTCGTGAATCACCTCCGTAGCGCAACCCTTGCGAGA
GACCGACCCTAGGAGACCTATGTCACCGCCGCCTCAAAAATCACACTATC
ATATGGTATAATGCACTCGGCACAACAGGCAGTTGACATCACTACACCAA
CAGTAGTGGCCAAGTGTTTGGATAGGAGGATGAAGCCGGCGAAATTTCAT
CTTACGCAAACTATTGTTGTAAATGTCTGTTCCTAAGTCGATGTCGACTG
GTACACTGGTACATACAGATGGTATGCGGGCAACAGCGGACAGACAGACA
GACAGACAGACAGACAGACAGACAGACATTATGGTAGCAACGCATTTGCG
AGTAAACTATGGTACAGACGATCGATCGTGTAGTGGACACGGTGGTTGCA
CCCGCGAGGTGATAGTTTCCTCGGACAGTGCCCACGAACCGCAGAGCTTT
GAGAGGGTGACCCCAAGTGGTATGGCAGGGTTGCTACCACTGTCGTGCCG
TGACGCTTGACTGGCTGGCCTTGTTGACCGGCGCAAGGCTTTCAGAGCGC
GTTTCAATTATTTTTTATGTATTTATGTATGGAGCCCTAGTCATGGCAGG
CTCTAACTACTGTACTTCACTGATAGTTGTGATGATTTTGCAAAATACCA
AGGGCGTTAGGTCTCGGCGAATTGTACCGTACGAGGCTGAGGCTTTCATC
AATAGGCTTATCCTCACGACGAGGCCTTTTTTTTTCTTTTTCTGAAAGAA
TTGATAAAAGCAAGTACTGGAACAGAGCGCGCGTCGGTACGTGTACTCTC
TATTTTTTTCGGCGACGCAGCGACTACCGTAGTGGGGCGCGGGGGGGGGG
GGAGGATCTATCGACAGCTGCATCCGCCAGCCTCGTTCAGCCTTTTTGAG
CTCCTGTAGTATTTATTGCCGGTGTCGGTGTGGAGAGGTTTTCGATACAC
TGGTATGATAGGTATCACCAACTGCCTTGTTTCTAGGGAGTTGTTATTTT
TACCACAGGTTGGTGACTTGGGGAATCGTTTTTTTCTTCTTTCGTATTTT
GTGAGGGTGGTTTTTATCTTGGTACTGTTGGACACGAATCGAGCGCTTGT
AATTTGCGTTATGATTGATAGCTGATGATTTGAGATGGAAGTACATACAA
CTTGACCCTTTTTATGTTGTTGTATATCCTACTCGGAATTGTGTTGTACC
CAAAAACAAATCGACGTTTCGGCTGCCACCACGTTGATCTCCTGGTAGGA
CTGGTTTGATTATTTTTTTTGTATGTATGAACGTGACAACGCTTTGCGAA
CCGGGGGGGGGGGTGAGCGGTGGCAGGGGCACACACCTCGTGTCTGTTGT
ACGTATGGTACTGTACAGAGGTATTACCACTGCTTTCGCTTGACAATTGA
GTTTTTGTGTGACGTTGCCCACGGAAATGGAGGTAACACACATAGCTAGT
GATTTTTTTTTTTAGACCTTCGATGTGTCTTGGACAAAAAAAACTCACAC
ACTCACACAGTTTTTCGTGTCTCTTTTGATTGCCCCCATTTTTTTTTTTT
TCTACTTTTTTGTTGTTGTGTTTCGTAAATGCATAATTTTGTTGCACTCA
TGAAAGCGAGACCATTAATAACCTAAAAATGAAAAATACAACGTTCGAAA
TACTTCTTTTTATATATATACGAATGTTCGAAGTATATATATATATCCTC
CGGCGGATAGGGCAAAACAAAATTGTAGCTGAAGTTCCCCACAAAATTAG
TTTCGCCGTGAAGGTGGTGATGGTGAGACTTTTTTTTTTTTTTGTTCCCT
TCCCTCCCTCCCTTTTTTTTTTTTACGTTGCGAAAAAACAGATCATGATA
CAGGCAGGCCCCGTGGCGAACGTTCACATGCCCAAGGACAAGGTCACCGG
AGTGCACCAGGGCTTCGGATTCGTGGAGTTCAGGAGCGAGGACGATGCGG
AGTACGCCATCAAGGTACTGCACTTAATACACTGTACTGTAGATATATTT
GTCATAGGTTCTGCACGTAAGTACGTACGCGGTGCATTACTGGGTCGTAT
GGTGTAGTATTGAGGGGGGAGGGGGGGGGGGGGGGGGGGAGGGTTCTAAC
GCGAGTTCTCCTTGTGGACGCATGTGCATTGCGACGGAAACGGGTGTCAC
TCTGGGCGAAGTACACATGCAGTGAGCGAGCTGTCGCGTGGGCTTTCGTG
AGAGTGTTTTTTTTTGCGAGCACTGACACCACATACACCCGTGTCCCTTG
TTTTCTTGTTTTGTTTTTTTTTTGCTCATTTTGCCATGGCTTGGACGCGA
ACCGCAGATCATGAACATGGTGAAGCTTTTCGGCAAACCGTTGAGGGTGA
ACAAGGCTTCCCAGGACAGAAAGGTATGAATCATGCCGGGCGGCACAGGC
GCCAACGCTTGCAGCAACAAGATTGTTTTTGTGCTGAAAGTGTTGGGGGA
GACGGGGGCGGGGGAAGGAGGTTGCGTGTGTTTGCCGATATGTAGTGATG
TACGTTGATGATATCGTACCGATAGCGCGTTGCGTGTTGGTGGTGTTGAT
TGTGTATCTAGGGGGTGTCGACAGCGTGATGAAAAATTCACGTCCCTACG
TACGACGCCCTAGTCGATCGTTTTTTCGTGGAAAGGATATGTTTTCGTGT
GTGTGTGTGTGTGTGTGTTTGTTGTGTGCCAATGCCACGAGACAATATTT
CGCCTGGCGTACGGCATCATACAAGTATGAACCGGGCACTATTGACGCTG
ATGCAGAGTTCACACCGTCATTTTTTCTCATATTTGGAGAAGCACCTGCC
CCCTCCCCACCCCATCTCCCTCCCCAGAAATCATTTGCTTTGCGACTTAG
CTGGAGCCGTTATCATGCTCGTAAAGCGGGGCCTTTAAAAAAACAATGAT
CATGTGACTTGGCTCATCCATCGTACTGTAGTGATCATACTCGCACACAT
CCCACAGCCATGGACTGTTGGCTATCGCTCCCCTGTAGGCAATAATGCCC
CCCCCGGGGATGTGTGGTCTAAATATGGCGTAGCGGTTGTCTACGTGGTG
CGAAGCGAGAGGACCCCCCCCCCAACCCTGCCCTCACCTGTAACCAGGTA
CTCATGTCAGCAGAAGTATCATGCCAGGTAACAGACATACTTCGAAGTAT
ACCCCGAACCGTATCATATCATATCGCACTCGCATGAGCTACGAGCACAG
TAGCTACGAGCACAGTATCATTTCATTGTGTGCGGCTTTGTGTCCATTTT
GTGCGTGCACGCGGGGATCAATTTTGAGTATACCAAGTATAGTATATAGC
CATATGCCCGCTGAATGTGGTAACGTGGTAACACTTGGCTTGCCGGCGGG
AAGGGAGTATCCAATGGACAAACCCGTCCGTGGTACATCTGTTTTGGCGT
ATTTTTTGTATAGCCCACGAGGAGATGGTGTGATCCCTTGGTTAAAATGA
ATCTTTAGCCGGCGTGAACCTGGCGTGTATCTTTTCCTGTCCCAAACAAA
AACGTTGTAGGGGTGCGAGGTGAATGGTCAACGCCTGTATATGGCACGGA
TTATTATAAGTACACCCACACATAATGCGTACACCCACACCCTGCTCTGC
CCGCCCCGCCCGCGGGTACAACCCTTCCTGCGTTTGGGCCTGCCATTTAT
GATACTGTCGCAGGCGAATGACGTGGGCGCTAACCTTTTCGTGGGGCAGC
TGGACGGAGACGTAGACGAAAAGATGCTGTACGACACTTTCTCCGCCTTT
GGCTTCATCACGCAGACGCCCAAGGTCATGCGCGACCCGGACACGGGCAT
GTCAAAGGGCTACGGTTTCGTCAGCTACGACGGGTGAGATGTTGTGTTGG
GGAGCGGGGGGGGGGGGGGGGGGGGCGTACTCATTTGTTGCTTGCCTTAG
TCATTTGATGGGGAGGGGGGAGTTACGTGAGCCTAGCCCTACTGACAGCA
CCTGCCGCTCCGAAGGGACTCGAACGACGTTCTCAGGACAAGGGAAAAAA
ATATGGGAATGACGAATCGCTTCAGATATTTTCTGCCAGACTAAAGTACT
TACCTCTGTTACAGTATGTTGTGAACCCGATCGTGTCAATAACCCTACCA
TAGCCTCCAGAGAAACGGAGGGGGGCTACGATGGTGGATACATCGGACCG
CGGACAATAAATTTCCGTCGATTTTTGAGCCAAGTATGCTCAAAAGGTCG
GCAAGGAAAGGTTACCGATTTTGTCACTTATTTTTATTTTGCACCCGGCT
CTGTATAAATTTCCAGGCTGAATCGCGATCGTTTTGCCACCCCCCGCCCT
CCCCCCTCTCTCTCAGCCTGTCTATTCACGGCCTTCGGAAAACCCGCTGT
GTGAGTTCCATTTGAACACCACAATTGACTATTTGGGGGGGGGGATACTC
TTTTGCGAGAATCTTCGCATCACCCGTTGAAGGCACACTATCCCGATAAG
CCCTGAGCTATTATAGTGTAGTTGCGTCAGAGAGATGACAGTACGAAGTA
CAGCATTATAGTAAGAAGTATGTTACACAAGTCTGCTATAAAGGCAAAGG
ATGCTTTTGTTGGCTTATACGCTTACATAGCGTGTCCGATGATGTTGAAA
GGGCTTTTGGGGAAGGGGGGACGGGAGACGTCGGATCCGCGCTTGGTTGT
GGCTTCCGGCACGTTTACTTGCTTGTTTGTTTTTGTTTTTGTTCTGTTTA
TTTTTGCGCACAGGTTCGACGCTAGCGATATGGCGATCGAGTGCATGCAC
AACCAGTACCTGTGCAACCGGCAGATCTCCGTGCAGTACGCCTACAAAAA
GGACTCGAGAGGGGAGCGACACGGGGGACAGGTACGGCGTCGGAGGTATC
GTGGATCTCTATCATACGCCTTTAGTCCCTCTTGCCCCTCCCCCCACATT
GCACCGTTCCGTGCTCGTATCATGTATCATATGTTTCCTCGTTTTCGAAG
CTCAGTTCTGACTAAAAGCAAAACACCAATAGGGGTGGCACGTCGTCTAT
CTCCATAAATAAAATAAAACTTGCTGTCTGCCTGTCTGTCTGTCTGTTGC
ACTAACTACTTGGATAAAATATGGATTTTCGTCACTTTTCCGTCCCCGGT
CCCCAAGACTCGGAAAACCACTTGGACAGAGCATGGGTCGAAACGCCCCC
CGTGATTCGGGAACCCCGCCAAACCGTCCCCGGGATCCCGAGACTGGGAA
AAATACTTGAATAGAGTAGGGGTCGAAAATGCCTTCCACGAATCGTGAAC
CCCGCCAACCCGGGGACGAAAGAAGACCATCCCCGGGCCTAAAACGCCTT
CCACGATTCGGGAACTCCGTCGAACCCGGGGCCAGAAAGGCCAAATCCCC
GGGTACAAAGCGCCTTCCGTGATGAGGACGCCCCACAAACAACAACAAAA
ACGGGGACGAAACACGATCATCCACGGTGTCGGAATGCCTACCACACCTT
TGGAACTCCGCCCAACCCGGGGATGAAGTAAGACATTTCCCGGGTCAAAA
ACGCCCTCCATGGTAGGGAAACCCCGCTAAAAAGAAAAGAAAAAAAGCCT
TAACCGGGGACCAAAAACAATCTACTTGAATACACTATAGTGTTAGGTCA
GTTCAGCCATTGTCGCACGCGGGTTTGGGTTGGGGTCGGGCGGAGTTGGT
GGGGTTGGGTCGGTCGGTCGGGTTGGATTGGGTTGGGTTGGGTTTGGGTC
GGTCAGTCGGACGGTCGGTCGGTCAGTCGGCTCGGCGGGCTTCCAAGGGC
GCCGTCGTCGACCGCGCTTGTTTGCTACATACTGCCGTCCGCCGCCCCTG
TTGGCGGTTACGTCGAGGGGTCGAATCTCGGTACGTTGCACTTTTTTTTT
CTGTGTCGTATTTCGTTGCGGAAAAGCGTGAGAGCCTAAGTTAAGCACAA
TTCGATGAAAGAGTCGACGAGCTATGGAAGTTCCGAACCCTTTGCTCGAT
AACAGTAGTAAGGCGAGTACCGGGGGAGAGAGAGGGATCGACAACTGTGA
GAACCGCTTGCTCAGACAGACAGGCGCGCTGAGTGGGGTAAAAGTAACAA
AAATGACTTTGTCATCCCCTGCTTACTTTGTACGTTTTCGCATCCTCTCT
TTTGGCACTCCTTTGTTGGCAGACGTTATGCTTTAGTAGCCGCGTTCTCA
TAGTCGCACTGGATCGTAACCTCCCCGCCCCGATGCCCGCGCCCCCAGGT
AACGCGTAATCGTGGATAAAGGAGCGCCCCCCGCCCCACCGCATCCCCCC
GCTCCCTCTGTTTCATAGGTACAAACAGGCCGTAAGACATCTCGTGGCGT
TCATTCTGTAAGGCCAACGAAACGCACCTTTTATATTTCTTATTTCTTTT
TTGTTGTGAAAACGCGCCGCCCGTGAATACTTTTTTTTTTTGATTTTTTT
CATTTTCACCGTTGCGTTGTCGTTCCTTCCTTCGTTCATTGCGTCGCCGT
CATGGTCATCGTCGCTGCGGCGCGGCAGGCGGAACGGCTGTTGGCGTCGA
ACAACCCTAGCAAGTTCAAGGTTCACACCCTCTTCTCGGTCGCTCCCGGC
AAAATCGAGGGCACGGTGTCAGCGGGGACCGGCGGACGAACGGCAGGAGC
ACCTCCGCCGCTGCCGCCTCCACCGTCGGTAAGAAATCCTGCCCGTCCCG
CGGCTGCGGGAGTGGGGGCGGGTGCGAGGGAGGGGAAGGGGGGTTACCTG
TATGGTCTACCCATGTACCAATCTGTTCGGGATTAGCCTTGTAGATAAGG
TAATTGTCTGTCGCATCGGGTGGGGTGCTTCTGATATGTAATAGTATGCC
GGAACTGGTTGCCAAATCGTTGTCGTGCGCAGCGGCTTCAAACGTGTTTT
GTGTTGCTTTGTATTCATATATGCCGCGGCCCGCCTCATATTTCGAAGGG
CGGCATGTCTCCAGATAAGTATACTCGTAGAGAGAGTGGATTTGCTCGGC
TGTGCAAGATGTGTGTGTGTCTAGTAGGGATTAGAAATTTGTACCATTTT
ACCTACTTCGTATGCTCATTTCAATGGTCCCATTGTACATGTGATTTTTC
TAGTAAATGGCTCCCAACCATTTATTTACCGTTACAGGGTATATTAACCG
TTGACGACTATGTACTGCAGTTACACGATCGTTGCAGACAGAGCAGAACA
ACGACGTCGTTAAGAATAGAGGTACCCGTGTGATAGGTGTCGAATACGAA
TGCAACTTGGTATTGTCTCACATCGTATTCCACTGCCGGTAGTGTAACAT
GATGTTTCACCCTCTCTGTTGTTGTTTTGCTCACCGCCGTGCAGAGTGGT
ATGCCACCTCTTCCACCGCTACCGCCCGGAATGCCCCCGCCGCCGCCGCC
GTCACCCGGCATGCCACCCCTCCCCCCCGGAACAACGCTTCCTTACATGC
CTCATCAATCGTCGGGGGGGGCGCCGCCGCCGCCGCCGCCGGGGCAAGGA
GGCATGGGGACCCCGGGGATGCCGCCCCCGCCGCCCTCGGGGTACGGGGG
TTACTCGCCTCACATGCCTCCGCATATGAGAATGGGCATGGGACGAGGAA
TGCCGCCTATGGGTGGGCACATGGGCATGCCCATGGGGATGCAGGTGGGT
TCGTGGTGGAGAGGTTTTTTAGCTGGTTGGATGGCGATGTCGCCTGCGTT
AGATGGGTTGGGTCATCGTGTCGCAACAAAAGTGGGGACTGTGGGGAGGG
GTTGTTGGTGTGTACAGTACCGTCAAATATGTGTTTTTCTCACGGGTTAA
TATGTAGAGATGGTCTGGTGCATTTTTTCGGTGGCAGCGATGGAAGAAAG
ACATGTAATTCAATGTGTAATTGTTTAATGTTTTTGAGTGTGGGGCCAAA
ACCAAAGCGTGGCGGTGGATATTCCTGCTGTGTAGCATGTCGGCCGTCCT
TACTTCTGTCTTCCCTTCCGTTCGCCACGTGTGATGACCCGTTTTTTTTT
ATCTCCCCTGACCCGACATGCTTTTGGCTGGCACGGTACCACATTATTTT
TCAACAAAAATATCACAGCGAGGCAACAACTACATGTACGGAATGCACGG
AGGACAAGGAGGAGGACGCCCTCCGATGATGGGCATGCCGCCGCCGCCCC
CGCCGCCTAACATGAACATGGGCCGCCCGCCGCCGCTACCGCCCACCCCC
GGCCAGCAAGCACCCCCGCCTCCCCCGCCGCCGTCGTCGTCTCCTGCCGC
ACCCCCCCCGCCTCCGCCACCGTCTTCCAGTGCCAGCGACAACGGCCCTC
CTCCTCCGCCTCCGCCTGGCGCGCCGGGAGCGAACTCGGGCGCACCACCT
CCCCCGCCTACAGGGAGGGAGGCCGCCGGGGGCGTGGAAGGTGGTGGAGG
CCCACCGCCGCCCCCGCCGCCGCCGAGCGTGAACGGGAGACGCATGGGCG
AGCCCGAAGATCATGACAGTTATAGCAGGGGGAATGGACCGCCGCCACCA
CCGCCGCCCCACGGGGGTCCTGCGCCGGGCGGAAGGGATGATCCTAGGGA
GCAGCAGCAGCAGCAGCGAGGGTCGCCGCCCCCCCCGCCGCCCATGCCTC
AAAGGGGCATGCCGCCGGGACCTCCTCCCCCTCCCCAAAACAGCAATGAA
GGGCAGGGGGGAGGAGGCGGGAACGGTGGTGGTGGTGGGGGGGGGGGGGG
CTTGTTACCCCCACCGCCCGGCAGGCCAAACTCGCTCCAGATGGGACAGC
TCCAGAACCGTGGCAGTATTCCGCCGCCTCCGCCGCCGCAATCGCAGCGC
ATGGGAGGTGGCGGGCCTCCTCCCCGCCCAGGGATGGGGGGTAGGGGCAT
GGGAGGAGGGCCGGACGGTGGGCGAGGCATGGGTATGGGCATGGGCATGG
GGGGGCGCGGCGGAGAAGGGGAACGAGGAGGAGGAGGGGGGGCATGGGGC
AAGGGGGGCAGGGATGATGCCCCCCCCTCCGCCCGGGGTGGGGGGGCGCC
TAGAGTCCCTCAACAGCAAGGCGGGAGGGGAATGGGGCGCGGGCCTCCGC
CCCCACCGCCCCCCGGAGGCGGCATGCGCCAGAACATGCATCAGGTTAGT
GCGTACCACTGGTTTTTTTTTTTTGCCTGGGTGCTTTTGTTTTAGGGGTC
GATAGGGATTTAGCTCCGCCGTCGTTACTCAGTTTTTTTCTACGGTATTA
GAAGCTAAAAAAAGATTGGAGATTGCCAAAAGGCTTAGCAAAGTGCCTGG
AAGTCAGGGAAAAATTTCCTGAATGTTCTGCGTGCTTGTAGGTAGTACGG
ACCAACAAGGTGCGACGGCGGCGCTCCCTCCGTTAATAATGCAAAAGCGC
GGTTTTATCGCAGACGCCAAACATGAGTCTCAAGTTGTGATGTGTTTCTC
TAATGTCACAGCCCCCACCCTTGGTGTTGCTCGATGGGATGTTTTTTGCG
CGTTATCAGCAGGACAGGCAGTAAAGTAGCGCGGCCTTCCTTATAGATAA
AAGGGGTTGCGCTAAAGGTGCTGCAAGGGAGCTCGAGCGGGAACAGGACA
ACACCTGTCGCGACCCTTGACCGGACGAGTTGTCGTCACGCCGGAGGAGG
AGCGTATTTCCTCCTGAAAACTCTTGTCGCAAGCGTGTCGCGCATTATTT
TCCCGTACCACGTCCCGTCACATACTGACGAGCCAACTGACGGGCCAACT
GACGGGCCAACGTGTTGCTGGGCTATAGATGGGCTGTAGTACGTGGCGTG
CTTCGTTGTTGCCCTTTTAAGAAATCGACTTGTGGTCGGCCGTCGGTGTG
TGGTGTGTTTGCCGCTTGTCGCGAAGGAAGAACCGCAAGGTGGACACACT
TTGAGGATTCAATTTAGTATTATACGATAGGTCCGATTGCATGTGGGATT
TCTGCCCAAGG
back to top

Coding sequence (CDS) from alignment at D-herbacea_F_contig116:331129..344439+

>mRNA_D-herbacea_F_contig116.1174.1 ID=mRNA_D-herbacea_F_contig116.1174.1|Name=mRNA_D-herbacea_F_contig116.1174.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=3486bp|location=Sequence derived from alignment at D-herbacea_F_contig116:331129..344439+ (Desmarestia herbacea DmunF female)
ATGTCGGCGTCTATCGAGCAACGCAACCAGGATGCCACCTGCTACACCGG
CAACCTGGATTCTGCTGTCACAGAGGCACTGCTCTGGGAGATGTCGGCGT
CTATCGAGCAACGCAACCAGGATGCCACCTGCTACACCGGCAACCTGGAT
TCTGCTGTCACAGAGGCACTGCTCTGGGAGATCATGATACAGGCAGGCCC
CGTGGCGAACGTTCACATGCCCAAGGACAAGGTCACCGGAGTGCACCAGG
GCTTCGGATTCGTGGAGTTCAGGAGCGAGGACGATGCGGAGTACGCCATC
AAGATCATGATACAGGCAGGCCCCGTGGCGAACGTTCACATGCCCAAGGA
CAAGGTCACCGGAGTGCACCAGGGCTTCGGATTCGTGGAGTTCAGGAGCG
AGGACGATGCGGAGTACGCCATCAAGATCATGAACATGGTGAAGCTTTTC
GGCAAACCGTTGAGGGTGAACAAGGCTTCCCAGGACAGAAAGATCATGAA
CATGGTGAAGCTTTTCGGCAAACCGTTGAGGGTGAACAAGGCTTCCCAGG
ACAGAAAGGCGAATGACGTGGGCGCTAACCTTTTCGTGGGGCAGCTGGAC
GGAGACGTAGACGAAAAGATGCTGTACGACACTTTCTCCGCCTTTGGCTT
CATCACGCAGACGCCCAAGGTCATGCGCGACCCGGACACGGGCATGTCAA
AGGGCTACGGTTTCGTCAGCTACGACGGGCGAATGACGTGGGCGCTAACC
TTTTCGTGGGGCAGCTGGACGGAGACGTAGACGAAAAGATGCTGTACGAC
ACTTTCTCCGCCTTTGGCTTCATCACGCAGACGCCCAAGGTCATGCGCGA
CCCGGACACGGGCATGTCAAAGGGCTACGGTTTCGTCAGCTACGACGGGT
TCGACGCTAGCGATATGGCGATCGAGTGCATGCACAACCAGTACCTGTGC
AACCGGCAGATCTCCGTGCAGTACGCCTACAAAAAGGACTCGAGAGGGGA
GCGACACGGGGGACAGGTTCGACGCTAGCGATATGGCGATCGAGTGCATG
CACAACCAGTACCTGTGCAACCGGCAGATCTCCGTGCAGTACGCCTACAA
AAAGGACTCGAGAGGGGAGCGACACGGGGGACAGGCGGAACGGCTGTTGG
CGTCGAACAACCCTAGCAAGTTCAAGGTTCACACCCTCTTCTCGGTCGCT
CCCGGCAAAATCGAGGGCACGGTGTCAGCGGGGACCGGCGGACGAACGGC
AGGAGCACCTCCGCCGCTGCCGCCTCCACCGTCGGCGGAACGGCTGTTGG
CGTCGAACAACCCTAGCAAGTTCAAGGTTCACACCCTCTTCTCGGTCGCT
CCCGGCAAAATCGAGGGCACGGTGTCAGCGGGGACCGGCGGACGAACGGC
AGGAGCACCTCCGCCGCTGCCGCCTCCACCGTCGAGTGGTATGCCACCTC
TTCCACCGCTACCGCCCGGAATGCCCCCGCCGCCGCCGCCGTCACCCGGC
ATGCCACCCCTCCCCCCCGGAACAACGCTTCCTTACATGCCTCATCAATC
GTCGGGGGGGGCGCCGCCGCCGCCGCCGCCGGGGCAAGGAGGCATGGGGA
CCCCGGGGATGCCGCCCCCGCCGCCCTCGGGGTACGGGGGTTACTCGCCT
CACATGCCTCCGCATATGAGAATGGGCATGGGACGAGGAATGCCGCCTAT
GGGTGGGCACATGGGCATGCCCATGGGGATGCAGAGTGGTATGCCACCTC
TTCCACCGCTACCGCCCGGAATGCCCCCGCCGCCGCCGCCGTCACCCGGC
ATGCCACCCCTCCCCCCCGGAACAACGCTTCCTTACATGCCTCATCAATC
GTCGGGGGGGGCGCCGCCGCCGCCGCCGCCGGGGCAAGGAGGCATGGGGA
CCCCGGGGATGCCGCCCCCGCCGCCCTCGGGGTACGGGGGTTACTCGCCT
CACATGCCTCCGCATATGAGAATGGGCATGGGACGAGGAATGCCGCCTAT
GGGTGGGCACATGGGCATGCCCATGGGGATGCAGCGAGGCAACAACTACA
TGTACGGAATGCACGGAGGACAAGGAGGAGGACGCCCTCCGATGATGGGC
ATGCCGCCGCCGCCCCCGCCGCCTAACATGAACATGGGCCGCCCGCCGCC
GCTACCGCCCACCCCCGGCCAGCAAGCACCCCCGCCTCCCCCGCCGCCGT
CGTCGTCTCCTGCCGCACCCCCCCCGCCTCCGCCACCGTCTTCCAGTGCC
AGCGACAACGGCCCTCCTCCTCCGCCTCCGCCTGGCGCGCCGGGAGCGAA
CTCGGGCGCACCACCTCCCCCGCCTACAGGGAGGGAGGCCGCCGGGGGCG
TGGAAGGTGGTGGAGGCCCACCGCCGCCCCCGCCGCCGCCGAGCGTGAAC
GGGAGACGCATGGGCGAGCCCGAAGATCATGACAGTTATAGCAGGGGGAA
TGGACCGCCGCCACCACCGCCGCCCCACGGGGCGAGGCAACAACTACATG
TACGGAATGCACGGAGGACAAGGAGGAGGACGCCCTCCGATGATGGGCAT
GCCGCCGCCGCCCCCGCCGCCTAACATGAACATGGGCCGCCCGCCGCCGC
TACCGCCCACCCCCGGCCAGCAAGCACCCCCGCCTCCCCCGCCGCCGTCG
TCGTCTCCTGCCGCACCCCCCCCGCCTCCGCCACCGTCTTCCAGTGCCAG
CGACAACGGCCCTCCTCCTCCGCCTCCGCCTGGCGCGCCGGGAGCGAACT
CGGGCGCACCACCTCCCCCGCCTACAGGGAGGGAGGCCGCCGGGGGCGTG
GAAGGTGGTGGAGGCCCACCGCCGCCCCCGCCGCCGCCGAGCGTGAACGG
GAGACGCATGGGCGAGCCCGAAGATCATGACAGTTATAGCAGGGGGAATG
GACCGCCGCCACCACCGCCGCCCCACGGGGGGATGGGGGGTAGGGGCATG
GGAGGAGGGCCGGACGGTGGGCGAGGCATGGGTATGGGCATGGGCATGGG
GGGGCGCGGCGGAGAAGGGGAACGAGGAGGAGGAGGGGGGGCATGGGGCA
AGGGGGGCAGGGATGATGCCCCCCCCTCCGCCCGGGGTGGGGGGGCGCCT
AGAGTCCCTCAACAGCAAGGCGGGAGGGGAATGGGGCGCGGGCCTCCGCC
CCCACCGCCCCCCGGAGGCGGCATGCGCCAGAACATGCATCAGGGATGGG
GGGTAGGGGCATGGGAGGAGGGCCGGACGGTGGGCGAGGCATGGGTATGG
GCATGGGCATGGGGGGGCGCGGCGGAGAAGGGGAACGAGGAGGAGGAGGG
GGGGCATGGGGCAAGGGGGGCAGGGATGATGCCCCCCCCTCCGCCCGGGG
TGGGGGGGCGCCTAGAGTCCCTCAACAGCAAGGCGGGAGGGGAATGGGGC
GCGGGCCTCCGCCCCCACCGCCCCCCGGAGGCGGCATGCGCCAGAACATG
CATCAGCAGGACAGGCAGTAACAGGACAGGCAGTAA
back to top