mRNA_D-herbacea_F_contig116.1172.1 (mRNA) Desmarestia herbacea DmunF female
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Overview
Homology
BLAST of mRNA_D-herbacea_F_contig116.1172.1 vs. uniprot
Match: D8LT38_ECTSI (B box-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT38_ECTSI) HSP 1 Score: 692 bits (1787), Expect = 2.390e-229 Identity = 404/698 (57.88%), Postives = 485/698 (69.48%), Query Frame = 1
Query: 1 MKIRRWAITCQSLVRGWLGRRTSQARRIYVQRLGEERTIGAVRWEQLLRRRGDEEMVSGAREDDLDADMELQKVFLKYCRFGDRRNTGRMQVAKLTAVCKDSGITSKIFPAQRVDISFSRLKPKDLNHLLYPGFLAALEDLALQHPDVRKLADAAAASVRAESVAVMTTDT--GNTTVGRLVD----------TKTPPVPRKGXXXXXXXXXXXXXXXXXXXXTKKNQTSAERFMK------------------------------------------GEFRPDDQRLLILLRKYILVKSEFGRESCAAIEAEGRGAKQRALGRLEAASIVVQASLARGCAGRAVAHRARKLRDIARVHARTHWAVSLVQTRVRAFQAQTRAAKLAVTRYYRCLDELTGAEYYFDPKTGSSSWTKPKILGKFEIPTAVVIPAGEEIVVPMCHECXXXXXXXXXXXXXXXXXXXXXAERLHRTGNSMNHLRVAIDKCDECLFQVAIKNCNQCRDNFCVSCFAYVHRKGRLRRHTFEPLVAMCHDCGERGQAERCFGCDPDGMLLLCKPCQQARHCGLDAYTLTFHRIEAVGFRSMKVKRLKLEKANRAKERWLKAESEVAGQKKMDKKRQAAAVKIQARLALRGAAWRGYLARKRRAHLVTQHLLWRMQRLRDDQIRKTKPYKFLRFIGKARLLKSDTNQEIVLKQFPR 1932
M+ RRW I Q+L RGWLGRR +Q RR Y Q LGEER G VRW+QL+RRR DEE+++GAR +DLD D+EL + F+KYCRFGDRRNTGRM VAKLTA+CKD+GI K FP QRV+ISFSRLKP+DL+HL YP FLAAL+D+ QHPD+R+L DAAAA+ + ESVAV+ T V LV+ +K P T + AE+ K G FRPDDQRLL+LL+K++ V S+ G+E+C+ +EAEGRGA++RAL RLEAA++VVQA +ARGC+GRA+A A R++ R AR +WA SL+QTR+RAF A+TRAAKLA+ RYYRCLD LTGAEYYFDPKTG SSWTKPKILGKF+I TAVV+PAGEEI+VPMCHEC XXXXXXXXXXXXXXXXXXXX +R+HRTGN+ HLRV I+ DNFCVSCFA++HRKGR+RRHTFEPLV MCHDCG+R QA +CFGCD +G LLLCK C +ARH L L HRIEAVGFRS+K+KRLK E+++RA+E W+KAES G++ DKK AAA+KIQ A WRGYLARKRR HL+ QHLLW++QR +DDQIRK YK R+ GKARLLKSDTNQEIVLKQ+PR
Sbjct: 1 MQTRRWVIGLQALTRGWLGRRRAQFRRTYTQHLGEERAAGRVRWKQLIRRREDEELLNGARSEDLDDDLELHRTFMKYCRFGDRRNTGRMVVAKLTALCKDAGIIDKRFPVQRVEISFSRLKPRDLSHLPYPSFLAALDDIGTQHPDLRRLGDAAAAAAQEESVAVLVRAIPGATTAVSSLVEADRGSGVGKKSKRPYNRSARGEATSPTNADGKRSRAENSRTPTTENRAEKAAKLSGRPGAAGAKSPAGGGATAKVAGAKAAXXXXTAETAEVECLGGFRPDDQRLLVLLQKFVFVNSQAGKEACSEMEAEGRGARRRALDRLEAAAMVVQACVARGCSGRALAREASGRRELHRHDARLNWAASLLQTRMRAFAARTRAAKLAMKRYYRCLDGLTGAEYYFDPKTGKSSWTKPKILGKFDISTAVVVPAGEEIMVPMCHECAXXXXXXXXXXXXXXXXXXXXVDRIHRTGNASTHLRVPIEXXXXXXXXXXXXXXXXXGDNFCVSCFAHIHRKGRIRRHTFEPLVGMCHDCGDRAQAFQCFGCDTEGCLLLCKRCLEARHHYLLPDQLAEHRIEAVGFRSLKLKRLKEEQSSRARELWMKAESAATGKRSRDKKMLAAAIKIQ-------AVWRGYLARKRRRHLMDQHLLWKIQRHKDDQIRKKLTYKVARYFGKARLLKSDTNQEIVLKQYPR 691
BLAST of mRNA_D-herbacea_F_contig116.1172.1 vs. uniprot
Match: A0A6H5KU11_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU11_9PHAE) HSP 1 Score: 399 bits (1025), Expect = 2.180e-127 Identity = 254/502 (50.60%), Postives = 306/502 (60.96%), Query Frame = 1
Query: 211 LQKVFLKYCRFGDRRNTGRMQVAKLTAVCKDSGITSKIFPAQRVDISFSRLKPKDLNHLLYPGFLAALEDLALQHPDVRKLADAAAASVRAESVAVMTTDT--GNTTVGRLVD--------------------------------------TKTPPVP-----------RKGXXXXXXXXXXXXXXXXXXXXTKKNQTSAERF---MKGEFRPDDQRLLILLRKYILVKSEFGRESCAAIEAEGRGAKQRALGRLEAASIVVQASLARGCAGRAVAHRARKLRDIARVHARTHWAVSLVQTR------------------------------VRAFQAQTRAAKLAVTRYYRCLDELTGAEYYFDPKTGSSSWTKPKILGKFEIPTAVVIPAGEEIVVPMCHECXXXXXXXXXXXXXXXXXXXXXAERLHRTGNSMNHLRVAIDKCDECLFQVAIKNCNQCRDNFCVSCFAYVHRKGRLRRHTFEPLVAMCHDCGERGQAER 1464
+ + F+KYCRFGDRRNTGRM AKL A+CKD+GI K FP QRV+ISFSRLKPKDL+HL Y FLAAL+D+ QHPD+R+LADAA A+ + ESVAV+ T V LV+ ++TP R G XXXXXXXXXXXXXXXX +AE F G FRPDDQRLL+LL+KY+ V S+ G+E+C+ +EAEGRGA++RAL RLEAA++VVQA +ARGC+GRA+A A R++ R + R +WA SL+QTR +RAF A+TRAAK+AV RYYRCLD LTGAEYYFDPKTG SSW KPKILGKF+I TAVV+PAGEEI+VPMCHEC AE VA D FQVA+K+C QC DNFCVSCFAY+HRKGR+RRHTFEPLV +CHDCG+R Q ++
Sbjct: 13 IMQTFMKYCRFGDRRNTGRMVAAKLAALCKDAGIIDKRFPVQRVEISFSRLKPKDLSHLPYSSFLAALDDIGTQHPDLRRLADAATAAAQEESVAVLVRAIPGATTAVSSLVEADRGSGVGKKSKRPYNRSAKGGATSPTNADGKRSRAENSRTPTTENRAEKAAKLGVRPGAAGAXXXXXXXXXXXXXXXXXXXXXXTAETFEVDYLGGFRPDDQRLLVLLQKYVFVNSQAGKEACSEMEAEGRGARRRALDRLEAAAVVVQACMARGCSGRALAREASGRRELDRHNTRLNWAASLLQTRWMKTHSKTRPGVARFTLRTLFVKIYCMQEQMRAFAARTRAAKMAVKRYYRCLDGLTGAEYYFDPKTGKSSWAKPKILGKFDISTAVVVPAGEEIMVPMCHEC---------------------AEE------------VATD------FQVAVKHCQQCGDNFCVSCFAYLHRKGRIRRHTFEPLVGICHDCGDRAQVQQ 475
BLAST of mRNA_D-herbacea_F_contig116.1172.1 vs. uniprot
Match: A0A6H5KFP2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFP2_9PHAE) HSP 1 Score: 120 bits (301), Expect = 1.900e-24 Identity = 65/98 (66.33%), Postives = 80/98 (81.63%), Query Frame = 2
Query: 2183 AYRHARAEGGVGEKHKDSLQQASRKAKRAVKLHEEKCDKAEALVQKAEDGLEALIGPFRLKKMVREALTRGLLMPFPVSVRRGKATARLEDGQNMREA 2476
A +HARA+GGV HKD LQQ SRKAKRAV+ E++ +KAE V+ AE+ LEALIGPFRL+ VR A+T+G+LMPFPVS+++GKA ARLE GQNMREA
Sbjct: 33 ARQHARAKGGVSADHKDELQQNSRKAKRAVQNQEQEREKAEERVKAAENALEALIGPFRLRNNVRAAVTKGMLMPFPVSMQKGKANARLEKGQNMREA 130
BLAST of mRNA_D-herbacea_F_contig116.1172.1 vs. uniprot
Match: A0A7S3PQJ7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PQJ7_9STRA) HSP 1 Score: 79.3 bits (194), Expect = 1.000e-12 Identity = 44/138 (31.88%), Postives = 62/138 (44.93%), Query Frame = 1
Query: 1042 YYFDPKTGSSSWTKPKILGKFEIPTAVVIPAGEEIVVPMCHECXXXXXXXXXXXXXXXXXXXXXAERLHRTGNSMNHLRVAIDKCDECLFQVAIKNCNQCR-DNFCVSCFAYVHRKGRLRRHTFEPLVA-MCHDCGER 1449
Y+F+PKTG +SW KP +L E+ T V IP +V C C + H G H+ V+I C C FQ+A ++C C+ D+FC +CF H G H+ + LV +C C R
Sbjct: 6 YWFNPKTGRTSWEKPHVLQDAEVDTVVHIPPERHQLVKYCERCSEKLIKVFCDDCEEYTCRDCF-DSFHTKGKRATHISVSIKTCIHCQFQLATRSCEDCKSDSFCDTCFMKTHESGTWVNHSCKLLVKNICQICESR 142
BLAST of mRNA_D-herbacea_F_contig116.1172.1 vs. uniprot
Match: A0A8K1FFS2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FFS2_PYTOL) HSP 1 Score: 65.1 bits (157), Expect = 5.520e-7 Identity = 70/258 (27.13%), Postives = 108/258 (41.86%), Query Frame = 1
Query: 931 AVSLVQTRVRAFQAQTRAAKLAVTRYYRCLDELTGAEYYFDPKTGSSSWTKPKILGKFEIPT-AVVIPAGEEIVVPMCH---ECXXXXXXXXXXXXXXXXXXXXXAERLHRTGNSMNHLRVAIDKCDECLFQVAIKNCNQCR-------------------------------DN--FCVSCFAYVHRKGRLRRHTFEPLVAMCHDCGERGQA---ERCFGCDPDGMLLL--CKPCQQARHCGLDAYTLTFHRIEAVG 1578
A++ VQ R+R A+ + +Y + +D Y+ +P+TG S+W KP++L ++ + A+ P + C EC XXXXXXX A+R H+ + + + V + KC C FQ+A + C C+ D+ FC CFA+ H++G L+ H PL+ MC DC + +A E+ P C C R C A T H +EA G
Sbjct: 258 AITRVQCRIRVLLAKKQYKLKLQAQYEKYIDPDWMLPYWMNPRTGYSTWLKPRVLEDDDVSSEAIPFPTPALTLSMDCQGERECKTCSDIYCYEXXXXXXXKCV-AQRFHKQDKADHEVEV-LQKCGLCKFQIASRKCIDCKAMKEARGGKRNGGKARQDKDKFDSDVAAAPEDDVLFCDVCFAFTHKRGALQVHKSLPLLEMCVDCLDDDEALDHEKAPPVKPFAKAAQWQCNTCFNRRICSSCATTK--HPVEACG 511
BLAST of mRNA_D-herbacea_F_contig116.1172.1 vs. uniprot
Match: A0A7S3GX72_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GX72_9STRA) HSP 1 Score: 61.6 bits (148), Expect = 1.330e-6 Identity = 40/141 (28.37%), Postives = 64/141 (45.39%), Query Frame = 1
Query: 874 AHRARKLRDIARVHARTHWAVSLVQTRVRAFQAQTRAAKLAVTRYYRCLDELTGAEYYFDPKTGSSSWTKPKILGKFEIPTAVVIPAGEEIVVPMCHECXXXXXXXXXXXXXXXXXXXXXAERLHRTGNSMNHLRVAIDKC 1296
AH+A+K V R + A +Q +R F + + ++A Y + +D T EY+ +P+T S WTKP +LG+F+ A +P+ EE +C +C A HR G+ NH + +D C
Sbjct: 104 AHKAQK------VARRRNNAAKAMQGLIRGFLGRRQIKRMAQAMYTKFIDGATEREYWCNPRTNVSHWTKPALLGEFDCGMATRMPSEEERFTVVCGQCATTTATCFCIQCDEPYCTMCYALG-HRAGHRKNHAHLLVDNC 237
BLAST of mRNA_D-herbacea_F_contig116.1172.1 vs. uniprot
Match: A0A7S0GT93_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0GT93_9EUKA) HSP 1 Score: 57.8 bits (138), Expect = 2.330e-5 Identity = 29/72 (40.28%), Postives = 41/72 (56.94%), Query Frame = 1
Query: 211 LQKVFLKYCRFGDRRNTGRMQVAKLTAVCKDSGITSKIFPAQRVDISFSRLKPKDLNHLLYPGFLAALEDLA 426
L+ VF+K+C+FGD NTG+M AK KD GI K VD+ FS++K K + + F ++ DLA
Sbjct: 138 LKTVFMKFCKFGDPTNTGKMTGAKYFKFTKDCGIVDKKLTRTSVDLLFSKIKVKGQRTINFATFKKSMMDLA 209 The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig116.1172.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-herbacea_F_contig116.1172.1 >prot_D-herbacea_F_contig116.1172.1 ID=prot_D-herbacea_F_contig116.1172.1|Name=mRNA_D-herbacea_F_contig116.1172.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=651bp MKIRRWAITCQSLVRGWLGRRTSQARRIYVQRLGEERTIGAVRWEQLLRRback to top mRNA from alignment at D-herbacea_F_contig116:281489..301927- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-herbacea_F_contig116.1172.1 ID=mRNA_D-herbacea_F_contig116.1172.1|Name=mRNA_D-herbacea_F_contig116.1172.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=20439bp|location=Sequence derived from alignment at D-herbacea_F_contig116:281489..301927- (Desmarestia herbacea DmunF female)back to top Coding sequence (CDS) from alignment at D-herbacea_F_contig116:281489..301927- >mRNA_D-herbacea_F_contig116.1172.1 ID=mRNA_D-herbacea_F_contig116.1172.1|Name=mRNA_D-herbacea_F_contig116.1172.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=3906bp|location=Sequence derived from alignment at D-herbacea_F_contig116:281489..301927- (Desmarestia herbacea DmunF female)back to top |