mRNA_D-herbacea_F_contig116.1170.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig116.1170.1
Unique NamemRNA_D-herbacea_F_contig116.1170.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
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BLAST of mRNA_D-herbacea_F_contig116.1170.1 vs. uniprot
Match: D8LT37_ECTSI (C2H2 zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT37_ECTSI)

HSP 1 Score: 248 bits (634), Expect = 1.390e-76
Identity = 135/189 (71.43%), Postives = 155/189 (82.01%), Query Frame = 1 
Query:    1 SKEAEEVLDRRREVREWQSFCGGRTRFSYLCGRWVGAASDIEEKQRQKRMLEAAEKERRLKEILEAKLKRKVQLANLRARAGSRATGESRRRVQRDREXXXXXXXEGEELLRMRDEEAKQLAGGDRYWGLVREMQRLRAIEEERRLAWEARIKATRQKMVAVRCISELSEFSYATPPKDPELATRINLL 567
            +KE EEVLD RR+VREWQS CG R RFS LC RWVG ASDIEEKQRQKRM+EAAE+E+R++E   AKL RK QLA LRA AGSRATGE RR+V+RD+E       EGEEL RM  EEA QLAGGDRYWGL+RE+QRLR IEEERR AWE RI+AT++KMVAVRCISELS+F++ATPP DPEL  +I+ L
Sbjct:  378 AKETEEVLDLRRDVREWQSSCGRRARFSDLCERWVGVASDIEEKQRQKRMIEAAEREKRMRERQAAKLLRKRQLAELRANAGSRATGEERRKVERDKEAEERKRLEGEELERMSREEAAQLAGGDRYWGLIRELQRLRVIEEERRRAWEVRIRATKEKMVAVRCISELSDFTHATPPIDPELQQQIDRL 566
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig116.1170.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LT37_ECTSI1.390e-7671.43C2H2 zinc finger protein n=1 Tax=Ectocarpus silicu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig116contigD-herbacea_F_contig116:267840..272300 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size581
Cds size579
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig116.1170.1prot_D-herbacea_F_contig116.1170.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig116 267840..272300 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927554.8788962-CDS-D-herbacea_F_contig116:267839..2679881622927554.8788962-CDS-D-herbacea_F_contig116:267839..267988Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig116 267840..267988 +
1690790229.6741292-CDS-D-herbacea_F_contig116:267839..2679881690790229.6741292-CDS-D-herbacea_F_contig116:267839..267988Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig116 267840..267988 +
1622927554.888782-CDS-D-herbacea_F_contig116:268749..2689771622927554.888782-CDS-D-herbacea_F_contig116:268749..268977Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig116 268750..268977 +
1690790229.6877472-CDS-D-herbacea_F_contig116:268749..2689771690790229.6877472-CDS-D-herbacea_F_contig116:268749..268977Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig116 268750..268977 +
1622927554.8978248-CDS-D-herbacea_F_contig116:271907..2720181622927554.8978248-CDS-D-herbacea_F_contig116:271907..272018Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig116 271908..272018 +
1690790229.6969976-CDS-D-herbacea_F_contig116:271907..2720181690790229.6969976-CDS-D-herbacea_F_contig116:271907..272018Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig116 271908..272018 +
1622927554.9061353-CDS-D-herbacea_F_contig116:272209..2723001622927554.9061353-CDS-D-herbacea_F_contig116:272209..272300Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig116 272210..272300 +
1690790229.7110474-CDS-D-herbacea_F_contig116:272209..2723001690790229.7110474-CDS-D-herbacea_F_contig116:272209..272300Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig116 272210..272300 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig116.1170.1

>prot_D-herbacea_F_contig116.1170.1 ID=prot_D-herbacea_F_contig116.1170.1|Name=mRNA_D-herbacea_F_contig116.1170.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=193bp
SKEAEEVLDRRREVREWQSFCGGRTRFSYLCGRWVGAASDIEEKQRQKRM
LEAAEKERRLKEILEAKLKRKVQLANLRARAGSRATGESRRRVQRDREEE
ERRRREGEELLRMRDEEAKQLAGGDRYWGLVREMQRLRAIEEERRLAWEA
RIKATRQKMVAVRCISELSEFSYATPPKDPELATRINLLATM*
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mRNA from alignment at D-herbacea_F_contig116:267840..272300+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig116.1170.1 ID=mRNA_D-herbacea_F_contig116.1170.1|Name=mRNA_D-herbacea_F_contig116.1170.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=4461bp|location=Sequence derived from alignment at D-herbacea_F_contig116:267840..272300+ (Desmarestia herbacea DmunF female)
TCCAAGGAAGCGGAGGAAGTTCTGGATCGACGGCGGGAGGTGCGGGAGTG
GCAGTCCTTCTGCGGAGGGCGGACGCGCTTCTCCTACCTTTGCGGTCGCT
GGGTTGGCGCCGCTTCGGACATAGAAGAGAAACAACGGCAGAAGCGTATG
TACGTGATATATGTGCACGCAGAATATACAGGCCACACGTGAGCCTGCCA
GCCGTGCTACGGTATTTGGGGAGGTATCTCCTCCCTTTTCATTTCCATCG
TCATCACTTCCCCGGATTTAGGTCACTCACGCCAGTGATCTGTATACCGC
TGAACCATGTTTCGATAGGGGGGGGTACTGTTGGGCCCAGGCCCAAAATT
TTCTGACTGATGGGGCTCCTCATCTGAGGAACTACGCAGTATCTTTGAAA
CGTCATTCGTGTTTGTCTATTTTCTGAAATTCATATTTAAACATGCTGTT
TTGCGCAACAAGCAGCAATCCGATGGCCACGGTGCATACGTCGCAAAGAA
AACACGAACGGCACAACTGCTGAAGACCGCACAGAGATTGTAGCCACGGT
CGCTAGAGTGGCTCTGAGCAGCTGCGAAACCAGCCCAAATTTCCCCCCCC
CCCCTCTCTACAGTAGCACGGGTTACGTGCGTTTAAGTCGTCGGCAGCGC
AGAGGTTGCAAAACAACCCATGCGCGAAGAATGATCGAAAATGAATCTGT
TTTGTCGAGGAGACCGTCTACACGCGCAGAGGGGCATTATTCGATCGCGC
CAAAAGGCGACAACCACGCGTCGTCCCAATTTTCCTCCTTCCTTTCTCAC
CTCTCCTCATCCGTCCCTATTCCATGCTGTCCCATTTCCCCCCCGCAGTA
AGTCATTCTGTTTTGTTTGCATGCCACGTTGTTTTTCACCTTGTGTTACA
AACTTTCCAGGCTGGAAGCGGCGGAGAAGGAACGGCGCCTGAAGGAGATT
CTTGAAGCAAAGCTCAAGCGCAAAGTACAGCTCGCCAATCTACGTGCGAG
GGCTGGGTCTAGGGCTACGGGGGAAAGTCGGCGACGCGTGCAGAGAGACC
GAGAAGAGGAGGAGAGGCGACGGAGGGAAGGAGAGGAGCTTTTACGCATG
AGGGACGAGGAAGCCAAGCAGCTGGCTGGCGGGGACAGGTCAGATGAGAG
TCGTGCTTATCAGAGTTTCTACGGAAATATCTCAATTTTTGTAGGACGAT
CGGCACAGCTTGAGACGATTGTCGTTGTGTTTGGTTTTCATCTTTGACGC
GTTTTTTCTTGATAATTGTCCATCACCCTCTTCAAGGGGAAACTGGAGCC
ATGCTACGGTAGCGGGGGGTACTTTTGGGCCTAAAATGCTCTGACTAATG
GGGCTCTTCAACTGAGGAACTACCCAATATCTTTGAAATGACATGCGTGT
TGTAAAATTGTATTCGAAATATACCAAGTCGATGGGATTGTTTCTGGGTT
GCCGGTTGAATGTTTTGTCAAAGTCGGGTATTGGTTGAGATATAGAGCTC
TTCACGTGAGGAGCCTCAGAAAATTTGGATACCCCTCCTACCGTAGCATG
CCTCACTGATGAGGCGGGAACTGCTGCATTTGAGCCGAATATGGCATCAA
CGACACTCCAGTAATGCCTACTCCATTCATTCATAGTCCGTCATGCGTAC
TGCGGGTGTATGTCGGACCGCCGTTGAACGAATGTGGTATCAATAGCGCA
GCTTAAGGCGCTAAATACGTACGAGGGGGTGAGCGAGTAACCATACCCAC
GGTGTGCCTCACTCAATCAATAATATTTATTTCTACATATAGGGTTGTGT
GCCCACTTCGAAGAGTACCTTGCCGAACTTGAAGGATGCCTCGAGTACAA
CGATCAACGCGGGTTTTGTTATCACATCAAGAGGACGATGGGTTTGGAAA
GGAGGAAGGCTGGCGGCGAGCAGTTTATCGAGGGCGAGGATGGTACGCTA
CTGCGGGGCAAGGGAAGCATTCGTGAACGGTGGGCGAGGTTTATCCACGC
CTAGCTGAACACGAAATCGCTCAAGCTCGATCCAACCATAAGCGAGCAGT
TCCCCCAACGACCCGTAGCACCACGACTCTGACTAGATCCGACGATGGAG
GAGAGGGTGGAAGCAATCGGCGGTATGGACAACTGTAAGGTGGTGGGATC
AGAATCCTTCCCGGTCGAACTGCTAAAGCTCGGCAACACCGGATTCCGGC
GGTATTTCCATATCATTCTTGTCAACGTGTGGCGAACGGAGGAAGTCCCG
CAGCAGTGGAAGGATGCCACGATCAAAGCCTCCCACAAGAAGAAAGGCCG
CTCCGATGATGGTAACAACTACAGAGTGATCTCACTCGTAGCTCACGCAG
GCAAAATGCTCCCGAAAACTGTCCCACTGTGAGATCGAAGGGATACTCCC
GGAGGAGCAGTGCGGGTTCCGCCGGCACGGTTTACTGTTGACATGCTGTC
TGTAGTACGCCGATTGCAGGAACTCAAGCGAGAGAGGAAATTCCCGCTGT
ACTTTGCATATGTGCTTCATCGACCTCCTGAAGACTCTTGACTCCATCGA
CCGAGAGCTGCTCTGGAAGTTGCTTCGTCGATTCGGCGTACCGGCCTCGA
TGCTCGCAGTCATCCGCCAGTTCCATAACGGTGCATGCGGGGCCCGCGTA
CGTACGGACGACGCCATACTCTCAGAATGGTTCGTTATCACACACGGGCT
ACACCAAAGATGTGTGATATCGCTTCTATGGTTCAATGCATTCTTCACCG
CGGTGTTACGCGTTGTTGTGGCGCACTTTAGCGAGGACGTGAACATACTT
GCCAGCCTGGTCCACCTCGAGCAGGACGGGGCGGGAGGTGCCAAGGAGCC
ACCACTAGAGTGTGTACGGCTTGCGATATAGGGCATGATATACGCAGATG
ACGACGGCACTGTTTCTATGTCGCCGGAAGGCCTCGCGAAGATGATGACG
GTCATTGCTAGGGTGTTCGAGGCCGCCGACCTTACCGTTTGGAAACGAAA
ACGGAGACCACGGTGGGACGGACACCGAAACCAGCACCTCTGTCCGCACC
GTTGGTCGTCGAGGTAGCTGGCCAGAAGCATCACCAGACAAGCAAATTTG
TATATCTGAATGGTGCTGTCAAAGAATGCACTCACATCACGCCGGGGATC
GAACGCCGGATCCAACTCGCATGGTAATACCTCAGAAGGTATCACCGGGG
GTTATACGACCTGCCGAATGCACCTTTTATACTAAAGGTGCGTATGCTCA
AGGGGGAAGTGGTGGGAGCCATGGATGTACGGATGCATGACGTGGACACT
TGACCAACAGCACTTCGCCAAACTTCGAACGGCACATCATCACCCCTTTC
TGCGAGTAATTGGTTTCGAACGTTAACAACGTATTGACCATCTCATGTCG
TACGCAACGGCGCTCAAGGAGACCAAGTGTGAGAGTGCGGAAACGACTAT
CCGGAAACGGAGACTTTTACTCACGGGGGGGCGTATCTAGGAAGCATTGT
GGGCGGGTACCTAAGCGGGTGATGTCCGGGATACTGTCTGGTGGGCAGAA
CCCAAAACGAGATAGACCGGTCAAGGCCTGGATGCACTGTCTACTTGATG
ACCTCACCGCGTTCCTTGCCATCCCCGTGGAAACAAATGAGAAGCCCCGC
ACGATCTTTGGACTAGAGATTGCGCTATGGACTGCAGCGGCCATGGAATG
GGGAATATGGTGTAGGGGGATTGCAGAGGGAGATGAATACTTCATGCAGA
CGTGGCACAGAGGGAAAGCGGCGAGGAGTAGTGCACGCCACGAGAAAGAG
GCCGAGAAGGCCCTAAGTAGCAGATTCCGCTGCCCAAGATGTCCTCCGAA
GGGTCACAGCAGTTTCCCTGTGTGATACCAGGCGGTGTCTCGTTTTTTGT
TCCTCGCTCTGAACCGTCGAAAACTTTCCATTTATATATTATCGTGTGTC
CGGACCCGCGGCGAATGATCCATGGCTACTCGTACGACGGCGGCACGTAA
TATGCAACCATGATTGCAACCCAATGTACATTATGCTGTTGTTGTTGATG
ATGACGATGGGGGAAAAGGTACTGGGGTCTTGTGCGCGAGATGCAACGGT
TGCGCGCGATCGAGGAGGAGCGACGATTGGCGTGGGAAGCGCGCATCAAG
GCAACAAGGCAAAAAATGGTGGCGGTCCGGTGAGTCGCGCTGGGTGGATG
GATTGAGTGGTATTAATTGTCCCCCTCGATGTGATGGAGGGGAACGGCTT
CTTCGTATTCTCTGTCTGTCGTGTTTGCCCGTGTGATATAATGTGGTAGC
GGTATGACATATCTCTGGATGGAGAGTTTGATAGGTGCGGACTGTGGGGT
TTTCCTTCGTCGTTGGGCAGGTGTATATCGGAGCTGAGCGAGTTCAGCTA
CGCCACTCCGCCGAAGGACCCCGAGCTAGCGACGAGGATCAACCTGTTGG
CCACCATGTAA
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Coding sequence (CDS) from alignment at D-herbacea_F_contig116:267840..272300+

>mRNA_D-herbacea_F_contig116.1170.1 ID=mRNA_D-herbacea_F_contig116.1170.1|Name=mRNA_D-herbacea_F_contig116.1170.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=1158bp|location=Sequence derived from alignment at D-herbacea_F_contig116:267840..272300+ (Desmarestia herbacea DmunF female)
TCCAAGGAAGCGGAGGAAGTTCTGGATCGACGGCGGGAGGTGCGGGAGTG
GCAGTCCTTCTGCGGAGGGCGGACGCGCTTCTCCTACCTTTGCGGTCGCT
GGGTTGGCGCCGCTTCGGACATAGAAGAGAAACAACGGCAGAAGCGTATT
CCAAGGAAGCGGAGGAAGTTCTGGATCGACGGCGGGAGGTGCGGGAGTGG
CAGTCCTTCTGCGGAGGGCGGACGCGCTTCTCCTACCTTTGCGGTCGCTG
GGTTGGCGCCGCTTCGGACATAGAAGAGAAACAACGGCAGAAGCGTATGC
TGGAAGCGGCGGAGAAGGAACGGCGCCTGAAGGAGATTCTTGAAGCAAAG
CTCAAGCGCAAAGTACAGCTCGCCAATCTACGTGCGAGGGCTGGGTCTAG
GGCTACGGGGGAAAGTCGGCGACGCGTGCAGAGAGACCGAGAAGAGGAGG
AGAGGCGACGGAGGGAAGGAGAGGAGCTTTTACGCATGAGGGACGAGGAA
GCCAAGCAGCTGGCTGGCGGGGACAGGCTGGAAGCGGCGGAGAAGGAACG
GCGCCTGAAGGAGATTCTTGAAGCAAAGCTCAAGCGCAAAGTACAGCTCG
CCAATCTACGTGCGAGGGCTGGGTCTAGGGCTACGGGGGAAAGTCGGCGA
CGCGTGCAGAGAGACCGAGAAGAGGAGGAGAGGCGACGGAGGGAAGGAGA
GGAGCTTTTACGCATGAGGGACGAGGAAGCCAAGCAGCTGGCTGGCGGGG
ACAGGTACTGGGGTCTTGTGCGCGAGATGCAACGGTTGCGCGCGATCGAG
GAGGAGCGACGATTGGCGTGGGAAGCGCGCATCAAGGCAACAAGGCAAAA
AATGGTGGCGGTCCGGTACTGGGGTCTTGTGCGCGAGATGCAACGGTTGC
GCGCGATCGAGGAGGAGCGACGATTGGCGTGGGAAGCGCGCATCAAGGCA
ACAAGGCAAAAAATGGTGGCGGTCCGGTGTATATCGGAGCTGAGCGAGTT
CAGCTACGCCACTCCGCCGAAGGACCCCGAGCTAGCGACGAGGATCAACC
TGTTGGCCACCATGTAAGTGTATATCGGAGCTGAGCGAGTTCAGCTACGC
CACTCCGCCGAAGGACCCCGAGCTAGCGACGAGGATCAACCTGTTGGCCA
CCATGTAA
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