mRNA_D-herbacea_F_contig116.1168.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig116.1168.1
Unique NamemRNA_D-herbacea_F_contig116.1168.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
[Close]
BLAST of mRNA_D-herbacea_F_contig116.1168.1 vs. uniprot
Match: A0A6H5KFT4_9PHAE (Gamma-glutamylcyclotransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KFT4_9PHAE)

HSP 1 Score: 231 bits (588), Expect = 4.420e-68
Identity = 119/220 (54.09%), Postives = 146/220 (66.36%), Query Frame = 3 
Query:  555 DKAAEEDVE---LYFAYGANMSPAVLTGKRGVKPVASLPAEVVAFGTADPSNVSKANNANGSIDRGTAAEIGRRGICTCFCHRAGFATIMPLPGPSQTWDLSPGAHGVIHVVSRSDVDIIASSETGYKRCLVEVETSWGERVQAVCFVSDPMQMLPTSVPPTSRYLALLQDGASYHNVNERYQCWLAAIPSVPSKDAETSPERTNTPMKAMVDRALLSTA 1205
            D+   ED +   LYFAYGANM P++LT KRGV P ASLPAE   F T    N S  +     I R        RG+C CFCHRAG+AT+   PGP Q+W+ SPGAHGV+HV+S S ++ IA+SE GY++ LV+VET   ER  AVCFVS+P Q LP SVPPTSRYL+LLQDGA+YHNV+E Y+ WLA +PSV  +D   S +R  TP K + D  L   A
Sbjct:  117 DRGGGEDCDTALLYFAYGANMCPSILTSKRGVNPFASLPAEATHFSTGTRRNPSATDGVGRVIRRDKTDAQKSRGMCVCFCHRAGYATLAHSPGPPQSWETSPGAHGVLHVISPSSLEKIAASENGYEKRLVDVETPTRERDIAVCFVSNPWQALPASVPPTSRYLSLLQDGAAYHNVDEDYRAWLARLPSVRPEDETMSSDRVRTPSKIVTDTVLAVAA 336
[Close]
BLAST of mRNA_D-herbacea_F_contig116.1168.1 vs. uniprot
Match: A0A061RLJ4_9CHLO (Gamma-glutamylcyclotransferase (Fragment) n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RLJ4_9CHLO)

HSP 1 Score: 93.6 bits (231), Expect = 2.290e-18
Identity = 58/179 (32.40%), Postives = 91/179 (50.84%), Query Frame = 3 
Query:  588 FAYGANMSPAVLTGKRGVKPVASLPAEVVAFGTADPSNVSKANNANGSIDRGTAAEIGRRGICTCFCHRAGFATIMPLPGPSQTWDLSPGAHGVIHVVSRSDVDIIASSETGYKRCLVEVET-SWGERVQAVCFVSDPMQMLPTSVPPTSRYLALLQDGASYHNVNERYQCWLAAIPSV 1121
            FAYGAN++ A ++  RG++P+ S PA +                               RG    F HR GF T+      ++  D     HGV+H++S +D   +A+ E  Y+ C VE E    G  ++A+ FV+ P +++ + +PPTSRYL LLQ GA    +++RY  WL ++PS+
Sbjct:   48 FAYGANINRAKVSESRGLRPIESRPARL-------------------------------RGYKLSFRHRGGFGTVEE----AREGDEWREVHGVLHLLSHADYCRLAAMEHEYRPCEVEAEPYDGGPPIKAIVFVTPPERLIRSGLPPTSRYLGLLQKGAPEWPLDDRYTSWLKSLPSI 191
[Close]
BLAST of mRNA_D-herbacea_F_contig116.1168.1 vs. uniprot
Match: A0A061SB69_9CHLO (Poly polymerase n=2 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061SB69_9CHLO)

HSP 1 Score: 94.0 bits (232), Expect = 5.190e-17
Identity = 58/179 (32.40%), Postives = 91/179 (50.84%), Query Frame = 3 
Query:  588 FAYGANMSPAVLTGKRGVKPVASLPAEVVAFGTADPSNVSKANNANGSIDRGTAAEIGRRGICTCFCHRAGFATIMPLPGPSQTWDLSPGAHGVIHVVSRSDVDIIASSETGYKRCLVEVET-SWGERVQAVCFVSDPMQMLPTSVPPTSRYLALLQDGASYHNVNERYQCWLAAIPSV 1121
            FAYGAN++ A ++  RG++P+ S PA +                               RG    F HR GF T+      ++  D     HGV+H++S +D   +A+ E  Y+ C VE E    G  ++A+ FV+ P +++ + +PPTSRYL LLQ GA    +++RY  WL ++PS+
Sbjct:  233 FAYGANINRAKVSESRGLRPIESRPARL-------------------------------RGYKLSFRHRGGFGTVEE----AREGDEWREVHGVLHLLSHADYCRLAAMEHEYRPCEVEAEPYDGGPPIKAIVFVTPPERLIRSGLPPTSRYLGLLQKGAPEWPLDDRYMSWLKSLPSI 376
[Close]
BLAST of mRNA_D-herbacea_F_contig116.1168.1 vs. uniprot
Match: A0A6V2TEL4_HETAK (Gamma-glutamylcyclotransferase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V2TEL4_HETAK)

HSP 1 Score: 84.7 bits (208), Expect = 1.690e-14
Identity = 65/195 (33.33%), Postives = 91/195 (46.67%), Query Frame = 3 
Query:  558 KAAEEDVELYFAYGANMSPAVLTGKRGVKPVASLPAEVVA--FGTADPSNVSKANNANGSID---RGTAAEIGRRGICTCFCHRAGFATIMPLPGPSQTWDLSPGAHGVIHVVSRSDVD-IIASSETGYKRCLVEVET-SWGERVQAVCFVSDPMQMLPTSVPPTSRYLALLQDGASYHNVNERYQCWLAAIPSV 1121
            K + + +  YF+YGANMS  VL G+  + P  S PA V    F     S+        GS D   RGT +E  R  + T                    W    GAHGV+H V    V   +A  E+GY+   + V+     E + A  FVS P+  L  S+PP++RYL+L++ GA  H + E Y  WL +I S+
Sbjct:   72 KMSNKKLVWYFSYGANMSRGVLAGRHKISPEFSYPARVKDPDFDVLSFSHRGGFATLIGSSDPAARGTVSEARRTKVGTTTKEAVAKERAPATREAQHVWQ---GAHGVLHAVPLEAVQGTLARVESGYRLRTITVQPYGCEELINAKAFVSSPLLKLSQSLPPSTRYLSLIKQGAKEHQLEESYIDWLYSIESI 263
[Close]
BLAST of mRNA_D-herbacea_F_contig116.1168.1 vs. uniprot
Match: A0A250XP62_9CHLO (Gamma-glutamylcyclotransferase n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250XP62_9CHLO)

HSP 1 Score: 79.3 bits (194), Expect = 2.380e-12
Identity = 68/210 (32.38%), Postives = 87/210 (41.43%), Query Frame = 3 
Query:  582 LYFAYGANMSPAVLTGKRGVKPVASLPAEVVAFGTADPSNVSKANNANGSIDRGTAAEIGRRGICTCFCHRAGFATI-MPLPGPSQTWDLSPGAHGVIHVVSRSDVDIIASSE-------TGYKRCLVEVETSWGERVQAVCFVSDPMQMLPT-------------------------SVPPTSRYLALLQDGASYHNVNERYQCWLAAI 1112
            LYF+YGANMSP VLT +R VKP AS P                       +  G        GI        GFATI    PG  Q        HGVIH++SR++ D I  SE        GY+   V      G +V A   ++ P  +LP                          +V P+ RYL +LQ+GA YHN++ +YQ WL  I
Sbjct:   61 LYFSYGANMSPKVLTERRKVKPQASYP----------------------GVLHGFVLSFRYPGIPY---FEPGFATIERSNPGDRQD------VHGVIHLISRTEWDTIKQSEGVTSSDQIGYQIVQVACSLYDGSKVTAFTLMTAPPFLLPMQKQRRQDCKIFLGGSNEYGGLGVTGAVQPSKRYLNILQEGAKYHNLDLKYQAWLQTI 239
[Close]
BLAST of mRNA_D-herbacea_F_contig116.1168.1 vs. uniprot
Match: A0A507BUY1_9FUNG (Gamma-glutamylcyclotransferase n=1 Tax=Synchytrium microbalum TaxID=1806994 RepID=A0A507BUY1_9FUNG)

HSP 1 Score: 71.6 bits (174), Expect = 1.940e-10
Identity = 53/192 (27.60%), Postives = 86/192 (44.79%), Query Frame = 3 
Query:  585 YFAYGANMSPAVLTGKRGVKPVASLPAEVVAFGTADPSNVSKANNANGSIDRGTAAEIGRRGICTCFCHRAGFATIMPLPGP--SQTWDLSPGAHGVIHVVSRSDVDIIASSE-------TGYKRCLVEVETSWGERVQAVCFVSDPMQM------LPTSVPPTSRYLALLQDGASYHNVNERYQCWLAAIP 1115
            Y  YG+NMSP VLTG+RG+KP  S+     A+                  D   A  +             GFAT++P   P  ++  +  P  HGV   +++ +   I  +E       +GY+   ++  +  G++++A    S P  +      +  S+ P++RYLAL  DGA+ H VN  Y  W+ + P
Sbjct:   20 YLGYGSNMSPKVLTGRRGIKPTESVAVFAEAYVLV--------------FDMRGAPYV-----------EPGFATVLPHDHPHLAKKLEYYPTCHGVAFKITKQEFKKIQQTEGGGGRKGSGYEAVCIKCVSYDGQKIEAWTLQSYPKNLYTRAADVEHSIAPSARYLALCTDGAALHQVNPDYLNWMKSYP 186
[Close]
BLAST of mRNA_D-herbacea_F_contig116.1168.1 vs. uniprot
Match: A0A7S3VR29_DUNTE (Gamma-glutamylcyclotransferase n=3 Tax=Dunaliella tertiolecta TaxID=3047 RepID=A0A7S3VR29_DUNTE)

HSP 1 Score: 68.6 bits (166), Expect = 3.140e-9
Identity = 62/195 (31.79%), Postives = 88/195 (45.13%), Query Frame = 3 
Query:  585 YFAYGANMSPAVLTGKRGVKPVASLPAEVVAFG---------TADPSNVSKANNANGSIDRGTAAEIGRRGICT----CFCHRAGFATIMPLPGPSQT-WDLSPGAHGVIHVVSRSDVDIIASSE-----------TGYKRCLVEVETSWGERVQAVCFVSDPMQML-PTSVPPTSRYLALLQDGASYHNVNERY 1091
            YFA+G+NM+P VLTG+RGVKP++SLP  V  F          T +P             DR    E G +G  T     + +R    +I       Q+ W      HGV+H++S+ D   +  SE            GY+   V  E   GE V A    + P  +  P +  P+ RYL LL++GA +H V+  Y
Sbjct:   60 YFAFGSNMNPKVLTGRRGVKPLSSLPCSVPRFSMGFHCQGYSTVEP------------FDRALPLESGLQGSTTPPIGSYPNRV--QSIKSRSRAQQSRWVYGHTVHGVVHLLSKDDWARVQLSEGILPPFSQVLQVGYQVIRVRCELYDGEWVCADTLSAAPAFLGDPWTSRPSLRYLDLLREGARHHGVDPDY 240
[Close]
BLAST of mRNA_D-herbacea_F_contig116.1168.1 vs. uniprot
Match: A0A8J4LW23_9CHLO (Gamma-glutamylcyclotransferase n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4LW23_9CHLO)

HSP 1 Score: 67.4 bits (163), Expect = 1.820e-8
Identity = 66/242 (27.27%), Postives = 107/242 (44.21%), Query Frame = 3 
Query:  585 YFAYGANMSPAVLTGKRGVKPVASLPAEV-----------VAFGTADPSNVSKANNANGSIDRGTAAEIGRRGICTCFCHRAGFATIMPLPGPSQTWDLSPGAHGVIHVVSRSD------VDIIASSETGYKRCLVEVETSWGERVQAVCFVSDPMQMLPTSVP--PTSRYLALLQDGASYHNVNERYQCWLAAIPSVPSKDAETSPERTNTPMKAMVDRALLSTAAXXXXXAIIPSLLALR 1253
            YFAYG+NM+P VLTG+R V P+ S PA +           + F     + V + +     ID G   ++ +    T      G  ++ P    S  W      HGV+H +S +D       + +AS ++GY+   VEV    G RV+A+     P  +  T+ P  P+ RYL LL+DGA ++ ++  Y  +L ++                    A V RA+L          ++P++  +R
Sbjct:   84 YFAYGSNMNPNVLTGRRKVVPLESRPASLSGWKLSFRIRGIPFLEPGFATVERVDE----IDGGRPPQLSQ--APTDPTPPTG--SMKPPSMRSNRWGSE--VHGVLHRISVNDWIQIMVTEGVASDKSGYRVVEVEVTQYDGRRVRALTLEGQPPSLHSTARPVLPSRRYLELLRDGARHYGLDPEYITYLNSLDPYEGDG-----------WNAAVGRAILLAVLVPLTLPLLPAVFLVR 304
[Close]
BLAST of mRNA_D-herbacea_F_contig116.1168.1 vs. uniprot
Match: A0A383VFX4_TETOB (Gamma-glutamylcyclotransferase n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383VFX4_TETOB)

HSP 1 Score: 66.2 bits (160), Expect = 3.550e-8
Identity = 64/222 (28.83%), Postives = 97/222 (43.69%), Query Frame = 3 
Query:  519 ASLSARSRAKSGDKAAEEDVELYFAYGANMSPAVLTGKRGVKPVASLPAEVVAFGTADPSNVSKANNANGSIDRGTAAEIGRRGICTCFCHRAGFATIMPLP-----------------GPSQTWDLSPGAHGVIHVVSRSD------VDIIASSETGYKRCLVEVETSWGERVQAVCFVSDPMQM-LPTSVPPTSRYLALLQDGASYHNVNERYQCWLAAI 1112
            A +S+R+R +S     + D   YFA+G+NM+P+VLTG+R V+P  S P  V       PS+                   G +G+        GFATI+ +P                          P  HGVIH ++R +       + + S   GY+   V+     G  VQA+   +    + +   V P+ RYL LLQ+GA +H ++  YQ WLA +
Sbjct:   19 AGMSSRNRLES----LKPDEVYYFAFGSNMNPSVLTGRRMVQPRQSWPCCV-------PSH---------------RLSFGVQGLPY---SEPGFATIVEVPQQXXXXXXXXXXXXXXXXXXXXXXXQPCVHGVIHRITRREWAYVKATEGVGSKRIGYQVIPVDCHLYDGTVVQALTLQAAAASLHMGRRVLPSQRYLNLLQEGARHHQLDTGYQQWLATL 211
[Close]
BLAST of mRNA_D-herbacea_F_contig116.1168.1 vs. uniprot
Match: A0A2V0NXA9_9CHLO (Gamma-glutamylcyclotransferase n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0NXA9_9CHLO)

HSP 1 Score: 65.5 bits (158), Expect = 5.520e-8
Identity = 63/206 (30.58%), Postives = 92/206 (44.66%), Query Frame = 3 
Query:  585 YFAYGANMSPAVLTGKRGVKPVASLPAEVVAFGTADPSNVSKANNANGSIDRGTAAEIGRRGICTCFCHRAGFATIMPLPGPSQTWDLS--PGAHGVIHVVSRSDVDIIASSE------TGYKRCLVEVET---------SWGERVQAVCFVSDPMQMLPTS--VPPTSRYLALLQDGASYHNVNERYQCWLAAIPSVPSKDAETS 1145
            YFAYG+NMSP+VLTG+R V+P  SLPA   A                           G  G+   F   A FAT++P PG +     +  P AHGV+H VS  +   I  +E       GY+   VE+E            G  V+A+        +  +     P+ RYL LL+ GA++H ++  Y+ WL ++ +  +  A  S
Sbjct:   50 YFAYGSNMSPSVLTGRRRVRPRVSLPAVAPA----------------------QRLSFGMIGLP--FSEPA-FATLLP-PGHALAAGGAGAPEAHGVVHAVSGEEWSQICRTEGVGARGVGYQVIEVELELYASXXXXXXXXGGVVRALTLQGAEASLHSSGRRALPSRRYLDLLRSGAAHHGLDPEYRAWLDSLEAYEAARAPAS 229
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig116.1168.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A6H5KFT4_9PHAE4.420e-6854.09Gamma-glutamylcyclotransferase n=2 Tax=Ectocarpus ... [more]
A0A061RLJ4_9CHLO2.290e-1832.40Gamma-glutamylcyclotransferase (Fragment) n=1 Tax=... [more]
A0A061SB69_9CHLO5.190e-1732.40Poly polymerase n=2 Tax=Tetraselmis sp. GSL018 Tax... [more]
A0A6V2TEL4_HETAK1.690e-1433.33Gamma-glutamylcyclotransferase n=1 Tax=Heterosigma... [more]
A0A250XP62_9CHLO2.380e-1232.38Gamma-glutamylcyclotransferase n=1 Tax=Chlamydomon... [more]
A0A507BUY1_9FUNG1.940e-1027.60Gamma-glutamylcyclotransferase n=1 Tax=Synchytrium... [more]
A0A7S3VR29_DUNTE3.140e-931.79Gamma-glutamylcyclotransferase n=3 Tax=Dunaliella ... [more]
A0A8J4LW23_9CHLO1.820e-827.27Gamma-glutamylcyclotransferase n=1 Tax=Volvox reti... [more]
A0A383VFX4_TETOB3.550e-828.83Gamma-glutamylcyclotransferase n=1 Tax=Tetradesmus... [more]
A0A2V0NXA9_9CHLO5.520e-830.58Gamma-glutamylcyclotransferase n=1 Tax=Raphidoceli... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig116contigD-herbacea_F_contig116:252334..256676 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score80.9
Seed ortholog evalue1.3e-12
Seed eggNOG ortholog554065.XP_005849727.1
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.2'-5' RNA ligase superfamily
EggNOG OGs2DKMB@1,2S635@2759,34IG3@3041,37WX3@33090
Ec32 ortholog descriptionButirosin biosynthesis, BtrG-like
Ec32 orthologEc-08_004010.1
COG Functional cat.S
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
Exons4
Model size1453
Cds size1020
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig116.1168.1prot_D-herbacea_F_contig116.1168.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig116 252531..256440 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927554.626685-UTR-D-herbacea_F_contig116:252333..2525301622927554.626685-UTR-D-herbacea_F_contig116:252333..252530Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig116 252334..252530 -
1690790229.5093176-UTR-D-herbacea_F_contig116:252333..2525301690790229.5093176-UTR-D-herbacea_F_contig116:252333..252530Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig116 252334..252530 -
1622927554.6947591-UTR-D-herbacea_F_contig116:256440..2566761622927554.6947591-UTR-D-herbacea_F_contig116:256440..256676Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig116 256441..256676 -
1690790229.5571027-UTR-D-herbacea_F_contig116:256440..2566761690790229.5571027-UTR-D-herbacea_F_contig116:256440..256676Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig116 256441..256676 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927554.6423855-CDS-D-herbacea_F_contig116:252530..2527501622927554.6423855-CDS-D-herbacea_F_contig116:252530..252750Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig116 252531..252750 -
1690790229.523912-CDS-D-herbacea_F_contig116:252530..2527501690790229.523912-CDS-D-herbacea_F_contig116:252530..252750Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig116 252531..252750 -
1622927554.65275-CDS-D-herbacea_F_contig116:253170..2532681622927554.65275-CDS-D-herbacea_F_contig116:253170..253268Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig116 253171..253268 -
1690790229.5313678-CDS-D-herbacea_F_contig116:253170..2532681690790229.5313678-CDS-D-herbacea_F_contig116:253170..253268Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig116 253171..253268 -
1622927554.6653726-CDS-D-herbacea_F_contig116:253832..2539721622927554.6653726-CDS-D-herbacea_F_contig116:253832..253972Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig116 253833..253972 -
1690790229.5387912-CDS-D-herbacea_F_contig116:253832..2539721690790229.5387912-CDS-D-herbacea_F_contig116:253832..253972Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig116 253833..253972 -
1622927554.680007-CDS-D-herbacea_F_contig116:255878..2564401622927554.680007-CDS-D-herbacea_F_contig116:255878..256440Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig116 255879..256440 -
1690790229.5474348-CDS-D-herbacea_F_contig116:255878..2564401690790229.5474348-CDS-D-herbacea_F_contig116:255878..256440Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig116 255879..256440 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig116.1168.1

>prot_D-herbacea_F_contig116.1168.1 ID=prot_D-herbacea_F_contig116.1168.1|Name=mRNA_D-herbacea_F_contig116.1168.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=340bp
MLLAGIAVSFAIPVVSGAISSKILQSGYAANVGARSVAGTPKLWTKYTRR
QRHISTTTCVLGHQPQQHDGFAIDELGPKPPTAATAKHLNCSDLASLSAR
SRAKSGDKAAEEDVELYFAYGANMSPAVLTGKRGVKPVASLPAEVVAFGT
ADPSNVSKANNANGSIDRGTAAEIGRRGICTCFCHRAGFATIMPLPGPSQ
TWDLSPGAHGVIHVVSRSDVDIIASSETGYKRCLVEVETSWGERVQAVCF
VSDPMQMLPTSVPPTSRYLALLQDGASYHNVNERYQCWLAAIPSVPSKDA
ETSPERTNTPMKAMVDRALLSTAAAAAAAAIIPSLLALR*
back to top

mRNA from alignment at D-herbacea_F_contig116:252334..256676-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig116.1168.1 ID=mRNA_D-herbacea_F_contig116.1168.1|Name=mRNA_D-herbacea_F_contig116.1168.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=4343bp|location=Sequence derived from alignment at D-herbacea_F_contig116:252334..256676- (Desmarestia herbacea DmunF female)
CTAGCTTATACATCTCACTATAATAGAGAGAACGGGCCCTGGTGGGGGAT
TGATTGAATGCCGCCGTTGCTATACGCAGCGGAACATTGAGGAGGTGCTC
GGTGCTTGTATTGGTTCTGTCTGAGATCTGAGAGTGGCGCTATCATAGAG
CCCAGTGAAGCCCTATCTTATAGAGCTCAACAAGGAGTACAACAACAGTA
CAGTAGTACTCGTAGCATCTTACATACTACTGTCATATGCTCTTGGCGGG
CATAGCAGTTTCTTTCGCAATACCCGTTGTTTCGGGTGCTATCAGCAGCA
AAATATTACAGTCGGGGTATGCTGCTAATGTGGGCGCGCGGTCGGTCGCC
GGGACGCCAAAGCTTTGGACCAAATACACCCGTCGACAACGTCATATTTC
AACAACAACATGCGTGCTGGGTCACCAGCCTCAGCAACACGACGGGTTTG
CCATAGACGAGTTGGGACCAAAGCCACCGACAGCAGCGACAGCGAAACAT
CTGAATTGCAGTGATCTTGCCTCATTGAGCGCGAGGAGCCGTGCAAAAAG
TGGAGACAAGGCGGCAGAAGAAGACGTGGAGTTGTACTTTGCCTATGGCG
CTAACATGAGTCCGGCTGTGCTGACGGGCAAGAGGGGCGTGAAACCTGTC
GCGTCTCTGCCTGCCGAGGTTGTCGCTTTTGGTACTGCCGATCCAAGTAA
TGTGTCCAAGGCTAACAATGCAAATGGGTCGATTGATCGCGGGACAGCAG
CAGAAATAGGACGACGAGGAATATGCACATGCTTCTGCCATCGAGCAGGT
GAGTCAATGGCGGCTATCAATATTAAAACGGACTCGCTTCGCTCGCCATT
TTTCGTCCCATTGTGGCATTTGAGGTAACAAGCTACAGTACGGTCAAGTA
CAAGAACAGACTGCCGTGCAGGTAGAGTACCGTATACTTACTCATGGTCT
TTTTTTTTTTTTTTGTCTCCGTCCGATTTATTATCTTCGCCCTATTCTTT
CTCTAGCTCCATCTCTCTTCGTAACTCAGATCGGGGGTCACATAGTAGAC
GCTCCTCCCGCCTTCCCACTACGGTACGTGCCTACATTTTTATCGCGAGA
AGAGTGCAGCACTTTCTTCCTTCCCTCGTCGACTGACGGAAGATGGTACA
CAAAAGTGCCACCGGGAATTGAACTCCCAACTTCCGCCAACAGAGGCGAA
CGCTTAGTCTTGTAGACCATCGCGCCACCCCTTTTCATGGTACTGCACTA
TTAAATACGAGTATGATATAGCACAAGAAGCGCATGGGGTGAATGCGACA
GCACCGAAGCATACACAGATGTTGTACTTCGATCTACGAGTATATAATAG
CAGTGTAGCAGTGCATTCGCGCAGTCGAGCCATATTTGGCTATGGTTATT
TTCTGAGGCTACAACTCCGCGCCCCGCTTCCTCCCGGCACGATTATGACC
TGCCGGGTTGGCAACGCGTGGGGAGGATCTTTCTGGCGGGTGTAAGGCCA
AACTCACTGTTGAGGTGTGACTCCTTCTTGCCACTGACTGGGCCGAGGCC
GTGGTGTTAGTGGTGGAGTTGGGTCAACACGGTGTGATCAGGTACATCCC
CTACGACCCGCGGACCCTTGTATTTTCAAGATAACCAGCGGTAAAGCATC
TCGAGTGCGTTTAGGTGCGGATGTACGCGGAGGCAGATCGACACCGTCGC
CGAAAGCCGACCGCAAAAAAACAGGCATATTTTTTTATGTTTATTTATTT
ATTTATCGTCACGTTAGTCCGATCCCTCGGGCCCGTGGTCACAGCAGGTG
CAAGGAGCATTCTATACCATCATACCCATATACATATCAAACAGACCGGG
AAAGCCTGGAGATGGAAACAAAAAGTTATGTATGGGTTCCGGGTGATAGC
CCAGAATCCCGACCCACAACACATGAAGAAGAGACACATCGCGATGCGTC
ACTGGTACTGCGATAACGCGTGAAGGCAGCTAAAACTACAATAATAAACT
AAAAAAGCTATCCCCTCGACAAATAAGCTACCGCTACCACCGCCTGCACA
TTATACATCGCTATGAATGTACGTACTGCAGTTTTACTGTCTGAAGTGCT
GTCTATACCCAACCAATGTGGGCATGACTACAGATACACTGCCTGAAGTG
CTGTCTGTAACACACAGTGATGCACAGGCAACAGCAGTCAGTCGTAATCA
CTGCAAACGATCTGCTAGTATTCATAGTACAATACTTGTCTGAAGTGCTG
CTTGTGTCACCCTCTCGCACGCACGCAGAAGAAATGGAGGACGAACAACG
AAATATTGAGATCAACAAGCAGATCAATAATACAACAAACAACAGTAGTA
GTACACGGCAACAACAACAACACCGAATGCCACAATGTACGAAGAAGATA
CAGTACATCTCCCTATCATCTAGTTAGGCATGCCTCACGTCAACGTCAAA
CTATGGCATGTCTAGAAACCCGCACGAAAGCGCTTCGGTCTAGCGTGTCC
ACTCGTCAAGCATGAAATATGCGACGTTGCGTCATTACGTAGAGGTACGA
CGCCGTACAATGATTGCAGTTAATTTGTGCATGCCGAGGTTGGAGCCGAA
ACGATGCGGCCTGAGTTTCACTGCTGATCGTACACCAGCACTACCATAAT
AGTGCCTATATTCGGTTATATCTATCTCAGCGTCTCCGCGTCCGCTGTTA
CTAGGTTTCGCAACGATAATGCCTTTGCCGGGACCGTCACAAACGTGGGA
CCTGTCACCAGGGGCACACGGTGTCATTCACGTCGTCTCGCGTTCAGACG
TCGACATCATAGCTAGCTCTGAGACGGGATACAAAAGGTGTTTGGTACGT
CCATCGGTTTTTTCTTGTTTTATTTGTGCAGAAGGTGTATACCTACCGTG
ATAGGTGACGCTATTCTTTGTGCTTTGTGGAGTTGGCAACATTTTTTTAG
GGGGAGCGCGTTCGCAACGGTACGACGACATTTGGTTTATGGGTAGCATA
TTATCTAAGATCGTATCGATAGTTGCTAATGACGTCTTCTCGAGCAGAGG
AGTGGTAGTCAGGATGCTGTGTCGTTGTAGTATCGTAGCTCTCGGCAGGG
TCAGATCAGCGCAACAAATAAAGGTGTACCCGACTGCCACCGGCCGGAGC
ACATTTTGGGGATGGTCAACTATCGCTAATGCCGTTTCAAGTACTTGGCA
GCATCCCCCATGTAGAAGCCTGTCGGACAGAGTTATCCGCGTGGCAGAAT
TGTTTCTCGGGAGTGTCCGGTCCATGGGCGTGAAGTAAACTGACAGTCTC
GGTGTCCGACCCTATGTTACTTTGAAGCTCAGACCACCACATCCGACCCC
CTTTATTTTCGCCACATTGCTGCTGCCGGTACTGCGTGCGTGCTTACGCC
GATGACAGGTTGAGGTAGAGACTTCTTGGGGCGAGCGGGTACAAGCCGTC
TGTTTCGTATCGGACCCCATGCAAATGCTTCCGACCAGCGTGCCCCCTAC
ATCCAGGTAAAAAATTGAAAAGTATTTCAGGTCTGTGCGGGTATTATTTC
ACGTGCTTTGGAGGGCTCGAGTACGTCTCGCCGTGCGGTCAAACCATACC
ACAATATACCATGATGGATGAGCCCCAATGTCATCATAGTGATGTGGCAG
GCTCGCTCTGATCGCGCATGTGCAGCTTACAAAATGCGAGTTGTACGCTG
ATCCGGTGAAAAACCGGCGAACTTATTCCCGGTTATGTTTTCTAGACGGA
TGCGAAAACACGCATACGCAGTTGGAATTTGTTTAGAGACGACGCGGCTG
TTCGTTCTCGAGACACGTATCATTAGCTCATAGTAAGATGACTAGCGCTT
ACAAAGAATGGATGCGCCCGCCTCGCCCCCCTTGCCCCCCTCCCCTGGTG
TTGTTTCGTGCTCTTGTAAACCGGAGGTACCTGGCTTTGCTCCAAGATGG
CGCGTCTTACCACAACGTCAACGAGCGCTATCAGTGTTGGCTTGCGGCGA
TACCGTCGGTCCCGTCAAAAGACGCAGAGACGTCCCCGGAGAGGACAAAC
ACGCCTATGAAAGCGATGGTCGATAGAGCGCTCTTGTCGACTGCGGCTGC
TGCGGCTGCTGCCGCCATTATCCCTTCGCTTTTGGCGTTGAGATAATAAC
TGGATTGATGACGCGGGGGGTGGGGCACGATTTTATGTGTACACTATACG
TACACCGCGGCTGCTTTGGGTCTAGGGAGTTTGTTGGCGCTTAATTTGTT
CTGTGTATGCCAAGATATCTTTTATTTTAATGTGCCAGCTTATATGCTGG
TGCAACGGCACGGGGGTTGTTGTTGTGACATCTGTGAAGCGGG
back to top

Coding sequence (CDS) from alignment at D-herbacea_F_contig116:252334..256676-

>mRNA_D-herbacea_F_contig116.1168.1 ID=mRNA_D-herbacea_F_contig116.1168.1|Name=mRNA_D-herbacea_F_contig116.1168.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=2040bp|location=Sequence derived from alignment at D-herbacea_F_contig116:252334..256676- (Desmarestia herbacea DmunF female)
ATGCTCTTGGCGGGCATAGCAGTTTCTTTCGCAATACCCGTTGTTTCGGG
TGCTATCAGCAGCAAAATATTACAGTCGGGGTATGCTGCTAATGTGGGCG
CGCGGTCGGTCGCCGGGACGCCAAAGCTTTGGACCAAATACACCCGTCGA
CAACGTCATATTTCAACAACAACATGCGTGCTGGGTCACCAGCCTCAGCA
ACACGACGGGTTTGCCATAGACGAGTTGGGACCAAAGCCACCGACAGCAG
CGACAGCGAAACATCTGAATTGCAGTGATCTTGCCTCATTGAGCGCGAGG
AGCCGTGCAAAAAGTGGAGACAAGGCGGCAGAAGAAGACGTGGAGTTGTA
CTTTGCCTATGGCGCTAACATGAGTCCGGCTGTGCTGACGGGCAAGAGGG
GCGTGAAACCTGTCGCGTCTCTGCCTGCCGAGGTTGTCGCTTTTGGTACT
GCCGATCCAAGTAATGTGTCCAAGGCTAACAATGCAAATGGGTCGATTGA
TCGCGGGACAGCAGCAGAAATAGGACGACGAGGAATATGCACATGCTTCT
GCCATCGAGCAGATGCTCTTGGCGGGCATAGCAGTTTCTTTCGCAATACC
CGTTGTTTCGGGTGCTATCAGCAGCAAAATATTACAGTCGGGGTATGCTG
CTAATGTGGGCGCGCGGTCGGTCGCCGGGACGCCAAAGCTTTGGACCAAA
TACACCCGTCGACAACGTCATATTTCAACAACAACATGCGTGCTGGGTCA
CCAGCCTCAGCAACACGACGGGTTTGCCATAGACGAGTTGGGACCAAAGC
CACCGACAGCAGCGACAGCGAAACATCTGAATTGCAGTGATCTTGCCTCA
TTGAGCGCGAGGAGCCGTGCAAAAAGTGGAGACAAGGCGGCAGAAGAAGA
CGTGGAGTTGTACTTTGCCTATGGCGCTAACATGAGTCCGGCTGTGCTGA
CGGGCAAGAGGGGCGTGAAACCTGTCGCGTCTCTGCCTGCCGAGGTTGTC
GCTTTTGGTACTGCCGATCCAAGTAATGTGTCCAAGGCTAACAATGCAAA
TGGGTCGATTGATCGCGGGACAGCAGCAGAAATAGGACGACGAGGAATAT
GCACATGCTTCTGCCATCGAGCAGGTTTCGCAACGATAATGCCTTTGCCG
GGACCGTCACAAACGTGGGACCTGTCACCAGGGGCACACGGTGTCATTCA
CGTCGTCTCGCGTTCAGACGTCGACATCATAGCTAGCTCTGAGACGGGAT
ACAAAAGGTGTTTGGTTTCGCAACGATAATGCCTTTGCCGGGACCGTCAC
AAACGTGGGACCTGTCACCAGGGGCACACGGTGTCATTCACGTCGTCTCG
CGTTCAGACGTCGACATCATAGCTAGCTCTGAGACGGGATACAAAAGGTG
TTTGGTTGAGGTAGAGACTTCTTGGGGCGAGCGGGTACAAGCCGTCTGTT
TCGTATCGGACCCCATGCAAATGCTTCCGACCAGCGTGCCCCCTACATCC
AGGTTGAGGTAGAGACTTCTTGGGGCGAGCGGGTACAAGCCGTCTGTTTC
GTATCGGACCCCATGCAAATGCTTCCGACCAGCGTGCCCCCTACATCCAG
GTACCTGGCTTTGCTCCAAGATGGCGCGTCTTACCACAACGTCAACGAGC
GCTATCAGTGTTGGCTTGCGGCGATACCGTCGGTCCCGTCAAAAGACGCA
GAGACGTCCCCGGAGAGGACAAACACGCCTATGAAAGCGATGGTCGATAG
AGCGCTCTTGTCGACTGCGGCTGCTGCGGCTGCTGCCGCCATTATCCCTT
CGCTTTTGGCGTTGAGATAAGTACCTGGCTTTGCTCCAAGATGGCGCGTC
TTACCACAACGTCAACGAGCGCTATCAGTGTTGGCTTGCGGCGATACCGT
CGGTCCCGTCAAAAGACGCAGAGACGTCCCCGGAGAGGACAAACACGCCT
ATGAAAGCGATGGTCGATAGAGCGCTCTTGTCGACTGCGGCTGCTGCGGC
TGCTGCCGCCATTATCCCTTCGCTTTTGGCGTTGAGATAA
back to top