mRNA_D-herbacea_F_contig116.1166.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig116.1166.1
Unique NamemRNA_D-herbacea_F_contig116.1166.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
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BLAST of mRNA_D-herbacea_F_contig116.1166.1 vs. uniprot
Match: A0A6H5KFW9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFW9_9PHAE)

HSP 1 Score: 176 bits (447), Expect = 2.530e-51
Identity = 80/128 (62.50%), Postives = 95/128 (74.22%), Query Frame = 1 
Query:    1 MELASEVLADSMRRLHGDD-ALLVVRNTPPGHSGCTERMFNGPVGAEAAGKLVDAAPDKYHWSSFDEHNMLLRDAFKATDGWVLLDAYSPTVLRSDAHIGGGDCLHYCVPGPADHWIALLYNIIVAAK 381
            ME +++ L  SM+RLHG+D A+LVVRNT PGH GCTERMF+ PV    A KLV  APD Y W SF+  N+ L+ AF    GW LLDAYSPT+LR D+HIG  DCLHYC+PGPADHW  LLYNI++ AK
Sbjct:  277 MEASAKALTSSMKRLHGEDKAILVVRNTVPGHWGCTERMFDAPVNKTIALKLVAEAPDSYEWDSFESRNVQLQKAFSPDRGWTLLDAYSPTLLRPDSHIGNSDCLHYCIPGPADHWALLLYNILLVAK 404
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BLAST of mRNA_D-herbacea_F_contig116.1166.1 vs. uniprot
Match: D8LT34_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT34_ECTSI)

HSP 1 Score: 167 bits (423), Expect = 4.870e-51
Identity = 77/128 (60.16%), Postives = 93/128 (72.66%), Query Frame = 1 
Query:    1 MELASEVLADSMRRLHGDD-ALLVVRNTPPGHSGCTERMFNGPVGAEAAGKLVDAAPDKYHWSSFDEHNMLLRDAFKATDGWVLLDAYSPTVLRSDAHIGGGDCLHYCVPGPADHWIALLYNIIVAAK 381
            ME +++ L  SM+RLHG+D A+LVVRNT PGH GCTERMF+GPV    A KLV  AP  Y W+SF+  N+ L+ AF    GW LLDAYSPT+LR D+HI   DCLHYC+P PADHW  LL NI++ AK
Sbjct:    1 MEASAKALTSSMKRLHGEDKAILVVRNTVPGHWGCTERMFDGPVNKIIASKLVAEAPGSYEWNSFESRNVQLQKAFSPDRGWKLLDAYSPTLLRPDSHIANNDCLHYCMPDPADHWARLLCNILLVAK 128
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BLAST of mRNA_D-herbacea_F_contig116.1166.1 vs. uniprot
Match: A0A6H5K9U7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9U7_9PHAE)

HSP 1 Score: 164 bits (415), Expect = 8.830e-50
Identity = 76/131 (58.02%), Postives = 96/131 (73.28%), Query Frame = 1 
Query:    1 MELASEVLADSMRRLHGDDALLVVRNTPPGHS-GCTERMFNGPVGAEAAGKLVDAAPDKYHWSSFDEHNMLLRDAF--KATDGWVLLDAYSPTVLRSDAHIGGG---DCLHYCVPGPADHWIALLYNIIVA 375
            ME AS+ +  SM+RLHGDDALL+VRNTPPGH   CTER F+GPV  + A  LV + P +Y W  F E+N +L +AF   ATDGW  LDAY+PT+LR D H+GG    DCLHYC+PGP DHW+ LLY++++A
Sbjct:    1 METASKEITASMKRLHGDDALLIVRNTPPGHGVTCTERTFDGPVDVDTAIDLVASGPHQYQWGRFPEYNAILEEAFLGNATDGWKELDAYTPTLLRPDFHLGGDENPDCLHYCIPGPIDHWVRLLYSMLLA 131
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BLAST of mRNA_D-herbacea_F_contig116.1166.1 vs. uniprot
Match: D7FL51_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL51_ECTSI)

HSP 1 Score: 167 bits (422), Expect = 5.150e-48
Identity = 79/131 (60.31%), Postives = 96/131 (73.28%), Query Frame = 1 
Query:    1 MELASEVLADSMRRLHGDDALLVVRNTPPGHS-GCTERMFNGPVGAEAAGKLVDAAPDKYHWSSFDEHNMLLRDAF--KATDGWVLLDAYSPTVLRSDAHIGGGD---CLHYCVPGPADHWIALLYNIIVA 375
            ME AS+ L  SM+RLHGDDALL+VRNTPPGH   CTER F+GPV  + A  LV + P +Y W  F E+N +L +AF   ATDGW  LDAY+PT+LR D H+GG D   CLHYC+PGP DHWI LLYN+++A
Sbjct:  232 METASKELTVSMKRLHGDDALLIVRNTPPGHGVTCTERTFDGPVDVDTALDLVASGPHQYQWGRFPEYNAILEEAFLINATDGWKELDAYTPTLLRPDFHLGGDDNPDCLHYCIPGPIDHWIRLLYNMLLA 362
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BLAST of mRNA_D-herbacea_F_contig116.1166.1 vs. uniprot
Match: D7FL53_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL53_ECTSI)

HSP 1 Score: 167 bits (422), Expect = 6.640e-48
Identity = 76/130 (58.46%), Postives = 95/130 (73.08%), Query Frame = 1 
Query:    1 MELASEVLADSMRRLHGDDALLVVRNTPPGHSGCTERMFNGPVGAEAAGKLVDAAPDKYHWSSFDEHNMLLRDAF--KATDGWVLLDAYSPTVLRSDAHIGGGD---CLHYCVPGPADHWIALLYNIIVA 375
            M  AS+ L  SM+RLHGDDALL+VRNTPPGH GC+ER F+GPV  + A  LV + P +Y W  F E+N +L +AF   ATDGW  LDAY+PT+LR D H+GG D   CLHYC+PGP  HW+ LLYN+++A
Sbjct:  244 MGTASKELTASMKRLHGDDALLIVRNTPPGHGGCSERTFDGPVDVDTALDLVASGPHQYQWGRFPEYNAMLEEAFLINATDGWKELDAYTPTLLRPDFHLGGDDNPDCLHYCIPGPIYHWVRLLYNMLLA 373
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BLAST of mRNA_D-herbacea_F_contig116.1166.1 vs. uniprot
Match: A0A6H5JZZ9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZZ9_9PHAE)

HSP 1 Score: 164 bits (416), Expect = 5.450e-47
Identity = 76/131 (58.02%), Postives = 96/131 (73.28%), Query Frame = 1 
Query:    1 MELASEVLADSMRRLHGDDALLVVRNTPPGHS-GCTERMFNGPVGAEAAGKLVDAAPDKYHWSSFDEHNMLLRDAF--KATDGWVLLDAYSPTVLRSDAHIGGG---DCLHYCVPGPADHWIALLYNIIVA 375
            ME AS+ +  SM+RLHGDDALL+VRNTPPGH   CTER F+GPV  + A  LV + P +Y W  F ++N +L +AF   ATDGW  LDAY+PT+LR D H+GG    DCLHYC+PGP DHW+ LLYN+++A
Sbjct:  245 METASKKMTASMKRLHGDDALLIVRNTPPGHGVTCTERTFDGPVDVDTALDLVASGPHQYQWGRFPKYNAILEEAFLSNATDGWKELDAYTPTLLRPDFHLGGDENPDCLHYCIPGPIDHWVRLLYNMLLA 375
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BLAST of mRNA_D-herbacea_F_contig116.1166.1 vs. uniprot
Match: D7G218_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G218_ECTSI)

HSP 1 Score: 156 bits (395), Expect = 2.140e-45
Identity = 73/125 (58.40%), Postives = 89/125 (71.20%), Query Frame = 1 
Query:    1 MELASEVLADSMRRLHGDDALLVVRNTPPGHSGCTERMFNGPVGAEAAGKLVDAAPDKYHWSSFDEHNMLLRDAFKATDG-WVLLDAYSPTVLRSDAHIGGGDCLHYCVPGPADHWIALLYNIIV 372
            M+ ASE L  SMRRLHGD+A+LVVRNT PGH    +RMF GPV  + A  LV   P  Y W++F + N LL +AF+AT G W LLDAYSPT+LR+D H    D LHYC+PGP DHW+ LLYNI++
Sbjct:  105 MKSASESLTSSMRRLHGDNAILVVRNTVPGHGESFDRMFGGPVDLDTALDLVAKGPPMYKWTTFGDRNKLLEEAFEATHGGWTLLDAYSPTILRADFHASEEDGLHYCLPGPIDHWVVLLYNILL 229
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BLAST of mRNA_D-herbacea_F_contig116.1166.1 vs. uniprot
Match: A0A6H5J7J3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7J3_9PHAE)

HSP 1 Score: 160 bits (404), Expect = 1.560e-44
Identity = 76/134 (56.72%), Postives = 96/134 (71.64%), Query Frame = 1 
Query:    1 MELASEVLADSMRRLHGDDALLVVRNTPPGHSGCTERMFNGPVGAEAAGKLVDAAPDKYHWSSFDEHNMLLRDAFKATDG-WVLLDAYSPTVLRSDAHIGGGDCLHYCVPGPADHWIALLYNIIVAAKQKKEGQ 399
            M+ ASE L  SMRRLHGD+A+LVVRNT PGH    +RMF GPV  + A  LV   P +Y W++F + N LL +AF+AT+G W LLDAYSPT+LR+D+H    D LHYC+PGP DHW+ LLYNI++  K K + Q
Sbjct:  323 MKNASESLTTSMRRLHGDNAILVVRNTVPGHGESFDRMFGGPVDLDTALDLVAKGPPRYKWTTFGDRNKLLEEAFEATNGGWTLLDAYSPTILRADSHASATDGLHYCLPGPIDHWVVLLYNILLE-KVKSDRQ 455
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BLAST of mRNA_D-herbacea_F_contig116.1166.1 vs. uniprot
Match: D8LHR2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHR2_ECTSI)

HSP 1 Score: 157 bits (397), Expect = 1.130e-43
Identity = 69/124 (55.65%), Postives = 90/124 (72.58%), Query Frame = 1 
Query:    1 MELASEVLADSMRRLHGDDALLVVRNTPPGHSGCTERMFNGPVGAEAAGKLVDAAPDKYHWSSFDEHNMLLRDAFKATDGWVLLDAYSPTVLRSDAHIGGGDCLHYCVPGPADHWIALLYNIIV 372
            ++ A E L  SMRRLHGD+A+LVVRNT PGH    +RMF GPV  + A  LV+  P ++ W++  + N LL +AF+AT GW LLDAYSPT+LR+D+H    D LHYC+PGP DHW+ LLYNI++
Sbjct:  305 IKTAGESLTASMRRLHGDNAILVVRNTVPGHGESFDRMFTGPVNLDTALDLVEKGPPEFEWTTILDKNTLLEEAFEATHGWTLLDAYSPTILRADSHASATDGLHYCLPGPIDHWVVLLYNILL 428
[Close]
BLAST of mRNA_D-herbacea_F_contig116.1166.1 vs. uniprot
Match: A0A6H5J9Y7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9Y7_9PHAE)

HSP 1 Score: 152 bits (383), Expect = 9.840e-43
Identity = 68/124 (54.84%), Postives = 88/124 (70.97%), Query Frame = 1 
Query:    1 MELASEVLADSMRRLHGDDALLVVRNTPPGHSGCTERMFNGPVGAEAAGKLVDAAPDKYHWSSFDEHNMLLRDAFKATDGWVLLDAYSPTVLRSDAHIGGGDCLHYCVPGPADHWIALLYNIIV 372
            ++ A+E L  SMRRLHGD A+LVVRNT PGH    +RMF GPV  + A  LV+  P ++ W++  + N LL +AF AT G  LLDAYSPT+LR+D+H    D LHYC+PGP DHW+ LLYNI++
Sbjct:  182 IKTAAESLTASMRRLHGDSAILVVRNTVPGHGESFDRMFTGPVNLDTALDLVEKGPPEFEWTTIRDKNTLLEEAFDATHGRTLLDAYSPTILRADSHASATDGLHYCLPGPIDHWVVLLYNILL 305
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig116.1166.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KFW9_9PHAE2.530e-5162.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LT34_ECTSI4.870e-5160.16Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K9U7_9PHAE8.830e-5058.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FL51_ECTSI5.150e-4860.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FL53_ECTSI6.640e-4858.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JZZ9_9PHAE5.450e-4758.02Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
D7G218_ECTSI2.140e-4558.40Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J7J3_9PHAE1.560e-4456.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LHR2_ECTSI1.130e-4355.65Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J9Y7_9PHAE9.840e-4354.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig116contigD-herbacea_F_contig116:239518..240665 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score71.6
Seed ortholog evalue3.1e-10
Seed eggNOG ortholog936053.I1C544
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Mortierella verticillata NRRL 6337
EggNOG OGs1GTTD@112252,2DIAT@1,2S5Y9@2759,3A7BT@33154,3P5G3@4751
Ec32 ortholog descriptionPC-Esterase
Ec32 orthologEc-08_003990.1
COG Functional cat.S
Best tax levelFungi incertae sedis
Best eggNOG OGNA|NA|NA
Exons2
Model size405
Cds size405
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927554.4996076-CDS-D-herbacea_F_contig116:239517..2396271622927554.4996076-CDS-D-herbacea_F_contig116:239517..239627Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig116 239518..239627 +
1690790229.4568968-CDS-D-herbacea_F_contig116:239517..2396271690790229.4568968-CDS-D-herbacea_F_contig116:239517..239627Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig116 239518..239627 +
1622927554.5127177-CDS-D-herbacea_F_contig116:240370..2406651622927554.5127177-CDS-D-herbacea_F_contig116:240370..240665Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig116 240371..240665 +
1690790229.4686468-CDS-D-herbacea_F_contig116:240370..2406651690790229.4686468-CDS-D-herbacea_F_contig116:240370..240665Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig116 240371..240665 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig116.1166.1prot_D-herbacea_F_contig116.1166.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig116 239518..240665 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig116.1166.1

>prot_D-herbacea_F_contig116.1166.1 ID=prot_D-herbacea_F_contig116.1166.1|Name=mRNA_D-herbacea_F_contig116.1166.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=135bp
MELASEVLADSMRRLHGDDALLVVRNTPPGHSGCTERMFNGPVGAEAAGK
LVDAAPDKYHWSSFDEHNMLLRDAFKATDGWVLLDAYSPTVLRSDAHIGG
GDCLHYCVPGPADHWIALLYNIIVAAKQKKEGQR*
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mRNA from alignment at D-herbacea_F_contig116:239518..240665+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig116.1166.1 ID=mRNA_D-herbacea_F_contig116.1166.1|Name=mRNA_D-herbacea_F_contig116.1166.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=1148bp|location=Sequence derived from alignment at D-herbacea_F_contig116:239518..240665+ (Desmarestia herbacea DmunF female)
ATGGAGCTCGCGAGCGAGGTCTTGGCGGATTCGATGAGACGCCTTCACGG
AGACGACGCGCTATTGGTCGTTAGGAATACTCCGCCGGGGCACTCGGGTT
GTACGGAGAGGTAAACGAACCGGAAGCAGCCGCCTTATCAACCATTGTTT
TTTGTAGGCCGGATCTTTAGCACGCTCGTTATATTGTAGGAGTAGTTTCA
ACGTGGGCTGTTCACCAGTTCGCGGAAAAATTCTACCACTAATCCTACTG
TAGCCTGATCCCTAACGATCATACTCCGTAGAACAGTAGAGAGTCACCTC
CTCTGGAAAATTCCTGTATAATAGTTCCGTCCTGCAACAACGCTAAACCT
ACCCACGAACCGTGCAGTGTAGCAGCACGGCGCAGGGAAAACATATCAGG
CTAGCCAATACAGGCGGAGTATTTTCGAGAGGGGGTACGGTACGGTACGG
GGGGTACTCATTTCATGCTTGGCGGTAGTCGTATGACCATAGACCATCGC
ATCCCTACAATGCCGGGACGGAGTACGTCGGGTTTTTACGGACAGGCAGA
CGGGAGGGCGGGGGGGGTAGGTTAGGGTTAGTGTAGGTGTTACTACTGTT
GTTGCTGCCCTTGGTTTCCACTCGTTGTGTACATGTATGTATTCGTGTTT
ATTTGTTTTTTTAGGAGTGCAGAGTGTCGCAGTTATCATACGATTACTTG
TAGTGGGTTGGGTTTTTGTTTTGGCGGAGGCATAGTGGGAATATTCTGTC
GGTTGCAGTTCGCCGAACGGTCGTACCGTGAGCACGCCGCTACACCTACC
CCCCCCCCCCCCTCCCCCTCTCCCCCTTTTGCAACTCCATCGCATCATCG
CAGGATGTTCAACGGGCCGGTTGGCGCTGAAGCCGCGGGCAAGCTTGTTG
ACGCGGCTCCGGATAAGTACCATTGGTCTTCCTTCGACGAGCACAACATG
CTTCTCCGAGACGCCTTCAAGGCAACAGACGGTTGGGTCCTCCTCGATGC
GTACTCGCCGACCGTCTTGCGTTCCGACGCTCATATAGGAGGGGGTGACT
GTCTCCACTATTGCGTCCCGGGCCCGGCGGACCACTGGATAGCGCTGCTT
TATAACATTATAGTCGCTGCCAAACAGAAAAAAGAGGGGCAGAGGTAG
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Coding sequence (CDS) from alignment at D-herbacea_F_contig116:239518..240665+

>mRNA_D-herbacea_F_contig116.1166.1 ID=mRNA_D-herbacea_F_contig116.1166.1|Name=mRNA_D-herbacea_F_contig116.1166.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=810bp|location=Sequence derived from alignment at D-herbacea_F_contig116:239518..240665+ (Desmarestia herbacea DmunF female)
ATGGAGCTCGCGAGCGAGGTCTTGGCGGATTCGATGAGACGCCTTCACGG
AGACGACGCGCTATTGGTCGTTAGGAATACTCCGCCGGGGCACTCGGGTT
GTACGGAGAGATGGAGCTCGCGAGCGAGGTCTTGGCGGATTCGATGAGAC
GCCTTCACGGAGACGACGCGCTATTGGTCGTTAGGAATACTCCGCCGGGG
CACTCGGGTTGTACGGAGAGGATGTTCAACGGGCCGGTTGGCGCTGAAGC
CGCGGGCAAGCTTGTTGACGCGGCTCCGGATAAGTACCATTGGTCTTCCT
TCGACGAGCACAACATGCTTCTCCGAGACGCCTTCAAGGCAACAGACGGT
TGGGTCCTCCTCGATGCGTACTCGCCGACCGTCTTGCGTTCCGACGCTCA
TATAGGAGGGGGTGACTGTCTCCACTATTGCGTCCCGGGCCCGGCGGACC
ACTGGATAGCGCTGCTTTATAACATTATAGTCGCTGCCAAACAGAAAAAA
GAGGGGCAGAGGTAGGATGTTCAACGGGCCGGTTGGCGCTGAAGCCGCGG
GCAAGCTTGTTGACGCGGCTCCGGATAAGTACCATTGGTCTTCCTTCGAC
GAGCACAACATGCTTCTCCGAGACGCCTTCAAGGCAACAGACGGTTGGGT
CCTCCTCGATGCGTACTCGCCGACCGTCTTGCGTTCCGACGCTCATATAG
GAGGGGGTGACTGTCTCCACTATTGCGTCCCGGGCCCGGCGGACCACTGG
ATAGCGCTGCTTTATAACATTATAGTCGCTGCCAAACAGAAAAAAGAGGG
GCAGAGGTAG
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