mRNA_D-herbacea_F_contig116.1165.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig116.1165.1
Unique NamemRNA_D-herbacea_F_contig116.1165.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
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BLAST of mRNA_D-herbacea_F_contig116.1165.1 vs. uniprot
Match: A0A6H5KFW9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFW9_9PHAE)

HSP 1 Score: 140 bits (352), Expect = 2.200e-37
Identity = 68/129 (52.71%), Postives = 87/129 (67.44%), Query Frame = 1 
Query:    1 SSPAADPSEGAWRKSDRGIAESPTDWSSWKFPRWQFQFLQSCKRAWDAHH--EGE-GPMPYWTWEATNCTLEAVDATDFCLAVEGRKGVLLVGDSLSRLATTTLASILRAKNIWADRTRDVWSACEGEL 378
            S+P ADP EG WR    G+ +SP +   W+FP  +F FL  C+  W+     EGE GP PYW WE T C+L+AV     C  +EGRKG+LLVGDSL+RL+TTTLASILRAK++ AD  +D W AC G++
Sbjct:   79 STPEADPFEGRWRSCANGVEDSPANMVGWEFPTSEFGFLAKCQNIWNKRKRVEGETGPRPYWAWEPTKCSLDAVSEEKLCRVLEGRKGLLLVGDSLTRLSTTTLASILRAKSLTADLYKDDWEACGGKV 207
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BLAST of mRNA_D-herbacea_F_contig116.1165.1 vs. uniprot
Match: A0A6H5JZZ9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZZ9_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 8.880e-26
Identity = 57/133 (42.86%), Postives = 78/133 (58.65%), Query Frame = 1 
Query:    1 SSPAADPSEGAWRKSDRGIAESPTDWSSWKFPRWQFQFLQSCKRAWDAHHEGEGPMPYWTWEATNCTLEAVDATDFCLAVEGRKGVLLVGDSLSRLATTTLASILRAKNIWADRTRDV-----WSACEGELTV 384
            S+PAA+PS G+WR+ + G+ ESPT+      P  +      C + W  HH  E PMPY+TW+A  C+LE V+   FC A+EGRKG+LLVGDS++ L   TL S+LRA          +     W AC GE+ +
Sbjct:   51 STPAANPSNGSWRRCENGVNESPTNPDDMMNPNPK----TICYQKWAEHHGSEEPMPYYTWDAAECSLEDVNEEKFCRAMEGRKGILLVGDSITDLMVRTLVSVLRATPEQVHSKYHLNHALKWGACNGEVKI 179
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BLAST of mRNA_D-herbacea_F_contig116.1165.1 vs. uniprot
Match: A0A6H5J7J3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7J3_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 1.010e-24
Identity = 57/132 (43.18%), Postives = 77/132 (58.33%), Query Frame = 1 
Query:    1 SSPAADPSEGAWRKSDRGIAESPTDWSSWKFPRWQFQFLQSCKRAWDAHHEGEGP---MPYWTWEATNCTLEAVDATDFCLAVEGRKGVLLVGDSLSRLATTTLASILRAKNI-WADRTRDVWSACEGELTV 384
            SS  ADPS+G W +   G+ ESP +  ++  P    +  + C   W A H+G GP   MPYW WE + C LE VD   FC  +EGRKG+L  GDSL+     TLA++LRA  +     T D ++AC+GELT+
Sbjct:  124 SSTVADPSQGKWNECAGGMDESPANTGNFTGPWKTNRTEKRCSERWSAEHDGVGPVPPMPYWKWEPSACRLEEVDEAKFCRVMEGRKGLLFAGDSLTGEMIDTLAAVLRATLVKHVPLTMDTYTACDGELTL 255
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BLAST of mRNA_D-herbacea_F_contig116.1165.1 vs. uniprot
Match: D7FL51_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL51_ECTSI)

HSP 1 Score: 102 bits (254), Expect = 2.120e-23
Identity = 52/128 (40.62%), Postives = 74/128 (57.81%), Query Frame = 1 
Query:    1 SSPAADPSEGAWRKSDRGIAESPTDWSSWKFPRWQFQFLQSCKRAWDAHHEGEGPMPYWTWEATNCTLEAVDATDFCLAVEGRKGVLLVGDSLSRLATTTLASILRAKNIWADRTRDVWSACEGELTV 384
            S+PAA+PS G+WR+ + G+ ESPT+      P  +      C + W  HH  E PMPY+TW+A  C+L+ VD   FC A+EGRKG+LLVGDS++ L   +   +  A+          W AC GE+ +
Sbjct:   52 STPAANPSNGSWRRCENGVNESPTNPDDMMNPNPK----TICYQKWAEHHGSEEPMPYYTWDAAECSLDNVDEEKFCRAMEGRKGILLVGDSITDLMVHSKYHLNHARK---------WGACNGEVKI 166
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BLAST of mRNA_D-herbacea_F_contig116.1165.1 vs. uniprot
Match: D7FL53_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL53_ECTSI)

HSP 1 Score: 102 bits (253), Expect = 3.370e-23
Identity = 54/133 (40.60%), Postives = 77/133 (57.89%), Query Frame = 1 
Query:    1 SSPAADPSEGAWRKSDRGIAESPTDWSSWKFPRWQFQFLQSCKRAWDAHHEGEGPMPYWTWEATNCTLEAVDATDFCLAVEGRKGVLLVGDSLSRLATTTLASILRAKNIWADRTRDV-----WSACEGELTV 384
            S+PAA+PS G+W + + G+ ESPT+      P  +      C + W   H  E PMPY+TW+A  C+L+ VD   FC A++GRKG+LLVGDS++ L   TL S+LRA +        +     W AC GE+ +
Sbjct:   50 STPAANPSNGSWPRCENGVNESPTNPDDMMNPNPK----TICYQKWAELHGSEEPMPYYTWDAVECSLDNVDEEKFCHALQGRKGILLVGDSITTLMVRTLVSVLRATSEPVHSKYHLNHAHKWGACNGEVKI 178
[Close]
BLAST of mRNA_D-herbacea_F_contig116.1165.1 vs. uniprot
Match: A0A6H5JU41_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU41_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 3.540e-21
Identity = 61/158 (38.61%), Postives = 82/158 (51.90%), Query Frame = 1 
Query:    1 SSPAADPSEGAWRKSDRGIAESPTDWSSWKFPRWQFQFLQ-SCKRAWDAHHEGEG---PMPYWTWEATNCTLEAVDATDFCLAVEGRKGVLLVGD---------------------SLSRLAT----TTLASILRAKNI-WADRTRDVWSACEGELTV 384
            SS  ADPS+G W+K + G+ ESP +  ++  P W+   L+ SC   W   H+G+G   PMPYW WE + C LE VD   FC  +EGRKG+L VG+                     S  +L T     TLA ILRA  + +   T   +SAC+G LT+
Sbjct:   35 SSMVADPSQGRWKKCEGGVEESPANTGNFTGP-WKINTLEGSCGERWSEEHQGQGHAPPMPYWKWEPSACRLEEVDQISFCGVMEGRKGLLFVGEGRVVRRPKKDGLAVGRKNPASSTRQLLTGEMIDTLAVILRATRVEYVPMTGKTYSACDGALTL 191
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig116.1165.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5KFW9_9PHAE2.200e-3752.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZZ9_9PHAE8.880e-2642.86Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J7J3_9PHAE1.010e-2443.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FL51_ECTSI2.120e-2340.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FL53_ECTSI3.370e-2340.60Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JU41_9PHAE3.540e-2138.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig116contigD-herbacea_F_contig116:235617..239323 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size385
Cds size384
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig116.1165.1prot_D-herbacea_F_contig116.1165.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig116 235617..239322 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927554.437652-CDS-D-herbacea_F_contig116:235616..2357381622927554.437652-CDS-D-herbacea_F_contig116:235616..235738Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig116 235617..235738 +
1690790229.4274426-CDS-D-herbacea_F_contig116:235616..2357381690790229.4274426-CDS-D-herbacea_F_contig116:235616..235738Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig116 235617..235738 +
1622927554.4510572-CDS-D-herbacea_F_contig116:238150..2382961622927554.4510572-CDS-D-herbacea_F_contig116:238150..238296Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig116 238151..238296 +
1690790229.4379673-CDS-D-herbacea_F_contig116:238150..2382961690790229.4379673-CDS-D-herbacea_F_contig116:238150..238296Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig116 238151..238296 +
1622927554.4651296-CDS-D-herbacea_F_contig116:239206..2393221622927554.4651296-CDS-D-herbacea_F_contig116:239206..239322Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig116 239207..239322 +
1690790229.446788-CDS-D-herbacea_F_contig116:239206..2393221690790229.446788-CDS-D-herbacea_F_contig116:239206..239322Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig116 239207..239322 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig116.1165.1

>prot_D-herbacea_F_contig116.1165.1 ID=prot_D-herbacea_F_contig116.1165.1|Name=mRNA_D-herbacea_F_contig116.1165.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=128bp
SSPAADPSEGAWRKSDRGIAESPTDWSSWKFPRWQFQFLQSCKRAWDAHH
EGEGPMPYWTWEATNCTLEAVDATDFCLAVEGRKGVLLVGDSLSRLATTT
LASILRAKNIWADRTRDVWSACEGELTV
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mRNA from alignment at D-herbacea_F_contig116:235617..239323+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig116.1165.1 ID=mRNA_D-herbacea_F_contig116.1165.1|Name=mRNA_D-herbacea_F_contig116.1165.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=3707bp|location=Sequence derived from alignment at D-herbacea_F_contig116:235617..239323+ (Desmarestia herbacea DmunF female)
TCTAGTCCTGCCGCTGATCCGTCGGAGGGGGCGTGGAGAAAAAGTGACCG
AGGAATCGCGGAGTCGCCGACTGACTGGAGCTCCTGGAAATTTCCGAGGT
GGCAGTTTCAGTTTCTACAAAGGTGAGATTTTTTACACGAGTAGTAGACT
ACGTATACATGTTGTGTTTTTTTTTTTGTTGGATTAAAAAAAAAAAAAAA
AAAAAATTGGAGGGCCACTTTTTTGTTTTGTTTCCGACGATTATTAAAGC
CCTCACCAGTTTCCGAAGTGTTGTTAATAGTTTCAGTTTCTACCAACGTT
AACGTGAGTTTTTACTTGTTTTTCTCGTTTTATACACTTTTTTTTCTTTT
TTAACGTTGGTAGGGGTGGCGCGATGGTCTACGAGACTAAGCGTTCGCCT
CTGTTGGCGGAAGTTGAGGGTTCGATTCCTTGTGGCACTTTTCTGTGCCA
TCTTCCGTCGCGGAAAACGCGAGAGCGTGAGTGAGCACAATTCGATGAAA
AGTCGACGTGGGAAGAAAGTGCTGCACTCTTCTCGCGATAAAAATGTAGG
CACGTACCGTAGGGGGAAGGCGGGAGGGGCGCCTACTATGTGACCCCGGA
TCTGAGTTACGAAGAAGAGAGATGGAGCTAGAGAAAGAATAGGGCGAAGA
TAATAAATGGGACGGAGAAAAAAAAAAAAACTTTGGGCGACTTTTTTTTT
TTTTTTTTTTAATCTTTTTTGTTTTAAAGAGTATTAATAAAGCCCCCACC
GTTACGCGCACGGGTGTAATGAAGGAGGCGTGTTTTGTTTTGGACATGTC
GCATAGATTGGTGTAGGTGGCTATTGATCTGTGGGATGCACGTTTCCGCC
CGGTGTTAGTGTTGCTACGTTGCTATCGATAGTGCGCCATATAAGTGAAA
TCCCTTTAGGTTTTAGTCTCTGTTTTGGCTGTTCAAAATCCGGCTATATG
TATATATATATATAGACTATGCATGTAGTGTACAAGGCGCTCCCCTTCGC
GGGCGGGTACCGCCCGCTACGGTCGCTCTACGAACAAAAGCACATAAAAG
AGGTGAAGCGGATACAGTAGTAGTACAGAGAGGTCCATGATTTGGTGCAA
CTGCCGACTGCCGACTTGCAAATGCCAAGAGCTCCCCCAGGAAGGAAAAT
AACCTGGACTCCGCATAGTATGAACAGGCTCCATAATACGTTCAACTTGC
AGGCAGCTGTTTGACCAGCTTTATCTGAAAGTATGTTAATAGTAAGTAGT
AGTATGAACAGGCTACTTCGAAGTATATAATTAAGAAGAACAGGCAGTTG
AACTTTGTGTCGTAGATTTTGGGAGACTCTCGGGAATTGCAGGGATGGCC
AAACCGAGCGTTTTCCGACAAAAAGGTAAAAGTCAGAAAAACTATATATC
TATATATACAGTACAGACTAGCTGTATACTTCGAAGTATACATTTGTTTT
TGTTTCTGTTATTTTTATTTTGTTGTTGTTTGTTAGTTCCTCTTCCATTG
CTACCATCACGTCCGCGCGCGCGATCTTACCCGTGCTTTAAAGCCTCTAC
GCGAGGCACACACGCCGATGTTGTATTTTCTATTTTCGATTTCATCTGCT
TTAGTTTTGGTCTCTTAACCTCCTTCTGAAACCCACTTCCAATTTTCGTC
GCATCATATGATTGTTCTTAACTCGCGTTTATGGACAAAAAATTACGTCG
ACCGGAAATGGTACCGACCAAAAACAAGGACTTATATTTCCTGCTGTAAG
CACCATCCCACGGGGGGGGGGTGTTGAAGGTTGGCACTCTTCTTCTACCG
CTGCCGCTATGTCTTCTACCGGCGGATGAGTAAACATTATTCACGTTTTT
TTTTATTTTTATTTTTATTTTTAAGATTCTCTTACCTTTTTTTTGAGCTT
TATGAGGGGTGGCCCAGTGATTCTAATGGCTAGGGTATTTCCTCTGTTGG
CGGAAGTTGGGGGTTCGATCCTTGGTGGCACTTTTCTGTGCCACCTTCCG
TCGCGGAAAACGCAAGAAGAGCGTGAGTAAGCACAATTCGATGAAAGTCG
ACGAGGGAAGAAAGTGCTGCACTCTTCTCGCGATAAAAATGTAGGCACGT
ACCGTAGTGGGAAGGAGGGAGAAGCGCCTACTATGTGACCCTGGTTCTGA
GTTAAGAAGAGAGATGGAGCTAGAGTAAGACTAGGGCGAAGATAATAAAA
CGGACGAAAAAAAAAAAAAAAAAATGTCGGTTGCGACATTCACGCGTGGG
TAGGATCTTGAGCGTCTATGCTGTAGTACCCCCCCCTCACCACGGTCGTA
TCTTGGTTTCTGTTGGTGAAACCAGGAGTCATGCTTGGGGATGGTGATGG
TATGTAATTACACGGCACCGCGCTCTATACGGCATGCACCCCCCTTTCGG
CCCGTGTTTTTATTTTTATTTATTTTCTGATGTTGCGCGTGTGTCTGTTT
TGCGATGTGTGTCGATGTATTTTTTTTTTGTCGTGGGGGTGGGCTGGCTG
GCGGATGGGCGGGTGGGCGGGCCACCCGGAGCAGCTGCAAGAGGGCTTGG
GATGCACATCATGAAGGCGAAGGGCCGATGCCTTACTGGACGTGGGAGGC
TACAAATTGCACGCTAGAGGCCGTTGACGCCACTGATTTCTGCCTCGCTG
TGGAGGGCAGAAAGGGGGTGCTTCTCGTAGGTGGGGGAAACTGTATTATG
TTTTATTACAAATACGTCATCGGCCGTGATGTTCCAAACTGGTTCGGGGA
GCGCGGGGATAATCGTCAACCTCATTGTGTGATACGTCGGTCGCGCGGAA
TCTATCGATCCTCAGATAAGGGGTAACGCAGTGACTCCCGTGGGTTGTCC
CAGGCTCTACAGGATAGTAATTGTATGCATTTGCGTCCGTGTGTGATTCG
ACGCTTGCTGTAGCGGGGAAGACAGACACGTGTGACGCATTATTTTTGCT
GTGCTGTCTTAAGGGTTCCTACTACTGGTGCTTCTCGTTGGTGGGGGGAA
ACATTATATACGTTTGAGTCCGTGTTTTGATGCAACGCTTGCTGCAACGG
ACAAGACACATTTGACAACTTTTGTTTACTGTGCTGTCCAAGGTTCCTTT
CATACATCATACTGGTAGTCATACCTACTATTAATATTATTATTTTACTA
TACATTTTGTGTTTTGTTGGTGATCTTACTTCAGTGGAGACAGAGTCTAC
GGTATGGAAAGGGCATCGTGTATGTACGAGTATGGGCCTTTCCTCAACCT
ACTGTATGACTCGTATGTAATGTCGTGATACCATTGATGTTGCGTCTTTT
TTTTTGTTCAGTCGCCGACATAGACAGTGACGGCGATGGAGCAACCGTCC
TTGAGGATCGCTTTCAAAGGTGGGGTGCCCCGTCTCTGTGGAGGGCGCAC
CCAGTTCTGGCTAGCAATTGTGCTGAAAAACGTCAACCCCCCACTCCCCC
CCCCCCCCCTCCCGCGCGCGCCATTCTGCGCAGCGCTTCCCTACACTCAC
GCCCTCCAATGAGATGCCGCCAATTCATGTTTTAACAGCTAATGAATGCG
ACCCCCCCCCCCCCCCCCCTCCCCCATTCTCTCTCTCCAGGAGATAGCCT
AAGCCGTCTTGCGACGACGACACTGGCCTCCATCCTTCGCGCGAAGAACA
TCTGGGCCGACAGGACGAGGGACGTCTGGTCCGCGTGTGAGGGCGAGCTA
ACGGTGG
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Coding sequence (CDS) from alignment at D-herbacea_F_contig116:235617..239323+

>mRNA_D-herbacea_F_contig116.1165.1 ID=mRNA_D-herbacea_F_contig116.1165.1|Name=mRNA_D-herbacea_F_contig116.1165.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=768bp|location=Sequence derived from alignment at D-herbacea_F_contig116:235617..239323+ (Desmarestia herbacea DmunF female)
TCTAGTCCTGCCGCTGATCCGTCGGAGGGGGCGTGGAGAAAAAGTGACCG
AGGAATCGCGGAGTCGCCGACTGACTGGAGCTCCTGGAAATTTCCGAGGT
GGCAGTTTCAGTTTCTACAAAGTCTAGTCCTGCCGCTGATCCGTCGGAGG
GGGCGTGGAGAAAAAGTGACCGAGGAATCGCGGAGTCGCCGACTGACTGG
AGCTCCTGGAAATTTCCGAGGTGGCAGTTTCAGTTTCTACAAAGCTGCAA
GAGGGCTTGGGATGCACATCATGAAGGCGAAGGGCCGATGCCTTACTGGA
CGTGGGAGGCTACAAATTGCACGCTAGAGGCCGTTGACGCCACTGATTTC
TGCCTCGCTGTGGAGGGCAGAAAGGGGGTGCTTCTCGTAGCTGCAAGAGG
GCTTGGGATGCACATCATGAAGGCGAAGGGCCGATGCCTTACTGGACGTG
GGAGGCTACAAATTGCACGCTAGAGGCCGTTGACGCCACTGATTTCTGCC
TCGCTGTGGAGGGCAGAAAGGGGGTGCTTCTCGTAGGAGATAGCCTAAGC
CGTCTTGCGACGACGACACTGGCCTCCATCCTTCGCGCGAAGAACATCTG
GGCCGACAGGACGAGGGACGTCTGGTCCGCGTGTGAGGGCGAGCTAACGG
TGGAGATAGCCTAAGCCGTCTTGCGACGACGACACTGGCCTCCATCCTTC
GCGCGAAGAACATCTGGGCCGACAGGACGAGGGACGTCTGGTCCGCGTGT
GAGGGCGAGCTAACGGTG
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