mRNA_D-herbacea_F_contig116.1159.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig116.1159.1
Unique NamemRNA_D-herbacea_F_contig116.1159.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig116.1159.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig116contigD-herbacea_F_contig116:6219..7560 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size174
Cds size108
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig116.1159.1prot_D-herbacea_F_contig116.1159.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig116 6227..7502 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927552.4367774-UTR-D-herbacea_F_contig116:6218..62261622927552.4367774-UTR-D-herbacea_F_contig116:6218..6226Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig116 6219..6226 -
1690790228.378497-UTR-D-herbacea_F_contig116:6218..62261690790228.378497-UTR-D-herbacea_F_contig116:6218..6226Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig116 6219..6226 -
1622927552.4769142-UTR-D-herbacea_F_contig116:7502..75601622927552.4769142-UTR-D-herbacea_F_contig116:7502..7560Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig116 7503..7560 -
1690790228.4078476-UTR-D-herbacea_F_contig116:7502..75601690790228.4078476-UTR-D-herbacea_F_contig116:7502..7560Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig116 7503..7560 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927552.4507365-CDS-D-herbacea_F_contig116:6226..63181622927552.4507365-CDS-D-herbacea_F_contig116:6226..6318Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig116 6227..6318 -
1690790228.387728-CDS-D-herbacea_F_contig116:6226..63181690790228.387728-CDS-D-herbacea_F_contig116:6226..6318Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig116 6227..6318 -
1622927552.4639757-CDS-D-herbacea_F_contig116:7486..75021622927552.4639757-CDS-D-herbacea_F_contig116:7486..7502Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig116 7487..7502 -
1690790228.4005787-CDS-D-herbacea_F_contig116:7486..75021690790228.4005787-CDS-D-herbacea_F_contig116:7486..7502Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig116 7487..7502 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig116.1159.1

>prot_D-herbacea_F_contig116.1159.1 ID=prot_D-herbacea_F_contig116.1159.1|Name=mRNA_D-herbacea_F_contig116.1159.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=36bp
MAAPLGCVSENGDTVEDIGVEAGLLAPQRRRGGWR*
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mRNA from alignment at D-herbacea_F_contig116:6219..7560-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig116.1159.1 ID=mRNA_D-herbacea_F_contig116.1159.1|Name=mRNA_D-herbacea_F_contig116.1159.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=1342bp|location=Sequence derived from alignment at D-herbacea_F_contig116:6219..7560- (Desmarestia herbacea DmunF female)
AGGAGACAATCGCTGAGCGAGTTACAGAGCCTGCATCAAGCTCGACATCG
GCTGCGACATGGCGGCCCCACTAGGTGAGAAATTGGTCAGTGGCGTCATG
CATGTGGACTGTCGCGATTTGATTGGTTTTGGTGCACTGTGTCACTAGGA
CTGAAAATCATGTATTTTTGGGACCGAGGAAGTGGGTAGGGAAGGGTTTG
GGGCTGTCCTAAGCCCTACAAACGAGGTGCCTTTTCCGGTTAGGTACATT
ACCCAGAGGTTGATGCACATCTTCGCGGCTCATACGACTCGCCGTGTGTT
TTGGGGCAGATTCGATATAGGAACTTTCTCGATCTGCCCAGTAGAACAGG
AGCCTTGGCTCAAGAAGTGGTTGTTGCACCATGCGCCCATGTTATGATGC
AGTACATTGAACACCAGCCTCACCGAGTCACCACGGCGTCATTCAGAGTC
ACGAAAAGGCAACCACGGGTTCCCCGCCGCATGCTACGCGTACTAACGTC
GTTGCTCGAAGGGTTAGTTGGTGAGAAACAGTGGAACTGTTGTTGAAGAA
GGACGGAACTCACGCGTGGTGCTCTATACAGTAGTAGGGGTTGCCGAAAA
GTGCACCAAATATGACCACCGGCCAGGGTGAAGCCCAATAATTACGCGAT
GTTGACGTGCACCGTTCGCCTTGACTTCGGTGCCTCCGGGAAAAGCGCGG
GGACCTCAAAGGTAGCTGGCGTCGTGGTGCTTCGATATCACCCCTATCGT
TGTAAACAATAATCGTAGTTCGTGAGGATCACTTGATACCGCGAACCTAG
GAATGACCAGAAAAGCTACTTTTGTACTGCTTTTATTATGCTGAGTAGCA
CCCAGTCAGTACTGTACCTGGTACTCTATGCCCTATTGTTGTCATACTCT
TATCATACTACAGCAGTACTTGTAGTACAACAGCACAGACAGTAGTAGTT
GAATGTATCAACGACGACTCTGTTGTTGTTGTACGTTACTCTATCATACT
ATAATATGGTACGAAGAGATGTGTGTGTGGTTGGTTTGCTTCCGTGTGCT
CGTTGTATATGCGTTCAATCTGTTGTGCTCGTAACGCGTGCACTGTTTTT
TTTTTTTTTTTGTCATGCTGGCAAAATATATAAGTCGAAGCACAGACAGT
AGAGTAGGGTTTGGCTGAAGATTGCTCTTGCACTGCTTTGACATTTCTTC
GTTGCTCCTGCTCTATGTCGCCATCTGATCGACCACTCGCAGGGTGCGTA
TCGGAGAACGGTGATACTGTCGAAGACATTGGTGTCGAGGCTGGACTTTT
GGCACCCCAAAGGAGACGTGGGGGGTGGCGGTAGTGGGAGCG
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Coding sequence (CDS) from alignment at D-herbacea_F_contig116:6219..7560-

>mRNA_D-herbacea_F_contig116.1159.1 ID=mRNA_D-herbacea_F_contig116.1159.1|Name=mRNA_D-herbacea_F_contig116.1159.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=216bp|location=Sequence derived from alignment at D-herbacea_F_contig116:6219..7560- (Desmarestia herbacea DmunF female)
ATGGCGGCCCCACTAGATGGCGGCCCCACTAGGGTGCGTATCGGAGAACG
GTGATACTGTCGAAGACATTGGTGTCGAGGCTGGACTTTTGGCACCCCAA
AGGAGACGTGGGGGGTGGCGGTAGGGTGCGTATCGGAGAACGGTGATACT
GTCGAAGACATTGGTGTCGAGGCTGGACTTTTGGCACCCCAAAGGAGACG
TGGGGGGTGGCGGTAG
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