mRNA_D-herbacea_F_contig1158.1157.1 (mRNA) Desmarestia herbacea DmunF female
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Overview
Homology
BLAST of mRNA_D-herbacea_F_contig1158.1157.1 vs. uniprot
Match: D7FU24_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FU24_ECTSI) HSP 1 Score: 171 bits (432), Expect = 3.840e-51 Identity = 83/103 (80.58%), Postives = 93/103 (90.29%), Query Frame = 2
Query: 152 MSLQASIEEKLRQDLQPSHLEIINESGMHNAPPGSESHFKVIVVSSKFEGKPLLARHRMVNAALKEELVEDIHALSMSTKTPAQWGAKEGKKIEPSPPCAGGS 460
MSLQA IEEKL +L PSH+E+INESG H AP G+ESHFKVIVVS+KFEGKPLLARHRMVNAALKEELVEDIHALSM+T+TPAQW A+ G K+EP+PPCAGGS
Sbjct: 1 MSLQALIEEKLTTELTPSHIEVINESGNHGAPLGAESHFKVIVVSTKFEGKPLLARHRMVNAALKEELVEDIHALSMTTRTPAQWAAEGGDKVEPTPPCAGGS 103
BLAST of mRNA_D-herbacea_F_contig1158.1157.1 vs. uniprot
Match: A0A6N1DY44_9GAMM (BolA family transcriptional regulator n=1 Tax=Ectothiorhodospiraceae bacterium 2226 TaxID=2740164 RepID=A0A6N1DY44_9GAMM) HSP 1 Score: 130 bits (327), Expect = 2.550e-35 Identity = 61/104 (58.65%), Postives = 77/104 (74.04%), Query Frame = 2
Query: 152 MSLQASIEEKLRQDLQPSHLEIINESGMHNAPPGSESHFKVIVVSSKFEGKPLLARHRMVNAALKEELVEDIHALSMSTKTPAQWGAKEGKKIEPSPPCAGGSK 463
M +Q++IE K+R+ L P HLE+INES HN PPGSESHFK++VVS F GKPL+ARHR +NA L +EL ED+HAL++ T TP +W A+ G SPPC GG K
Sbjct: 1 MRVQSAIERKVREALHPQHLEVINESDNHNVPPGSESHFKLVVVSEAFAGKPLVARHRQINAVLAQELREDVHALALHTLTPEEWAARGGAPT--SPPCLGGGK 102
BLAST of mRNA_D-herbacea_F_contig1158.1157.1 vs. uniprot
Match: UPI0014024C0E (bolA-like protein 1 n=1 Tax=Petromyzon marinus TaxID=7757 RepID=UPI0014024C0E) HSP 1 Score: 131 bits (329), Expect = 5.880e-35 Identity = 62/102 (60.78%), Postives = 81/102 (79.41%), Query Frame = 2
Query: 158 LQASIEEKLRQDLQPSHLEIINESGMHNAPPGSESHFKVIVVSSKFEGKPLLARHRMVNAALKEELVEDIHALSMSTKTPAQWGAKEGKKIEPSPPCAGGSK 463
+Q SI EKL + L P HL+++NESGMH P GSE+HFKV+VVS++FEG LLARHR+VN AL++ELV +HALS+ +TP QWG+ G+ ++PSPPC GGSK
Sbjct: 43 VQESIREKLTRALGPVHLDVVNESGMHAVPRGSETHFKVVVVSAQFEGVSLLARHRLVNEALRDELVGCVHALSIQARTPEQWGSSGGR-VDPSPPCLGGSK 143
BLAST of mRNA_D-herbacea_F_contig1158.1157.1 vs. uniprot
Match: A0A3M1WLH9_9GAMM (Transcriptional regulator BolA n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3M1WLH9_9GAMM) HSP 1 Score: 128 bits (322), Expect = 1.530e-34 Identity = 63/104 (60.58%), Postives = 77/104 (74.04%), Query Frame = 2
Query: 152 MSLQASIEEKLRQDLQPSHLEIINESGMHNAPPGSESHFKVIVVSSKFEGKPLLARHRMVNAALKEELVEDIHALSMSTKTPAQWGAKEGKKIEPSPPCAGGSK 463
MS+Q +IE KLR+ L P HLE++NES MHN PPGSESHFKV VVS +FEG+ L+ RHRMVNA L +EL IHAL++ T TP +W E ++ SPPC GGSK
Sbjct: 1 MSMQQNIENKLREGLAPDHLEVVNESHMHNVPPGSESHFKVTVVSDRFEGERLVGRHRMVNAILADELAGRIHALALHTYTPQEWA--ERQQAPQSPPCLGGSK 102
BLAST of mRNA_D-herbacea_F_contig1158.1157.1 vs. uniprot
Match: A0A4R8IP74_9GAMM (BolA protein family transcriptional regulator n=1 Tax=Thiohalophilus thiocyanatoxydans TaxID=381308 RepID=A0A4R8IP74_9GAMM) HSP 1 Score: 127 bits (318), Expect = 5.590e-34 Identity = 60/104 (57.69%), Postives = 76/104 (73.08%), Query Frame = 2
Query: 152 MSLQASIEEKLRQDLQPSHLEIINESGMHNAPPGSESHFKVIVVSSKFEGKPLLARHRMVNAALKEELVEDIHALSMSTKTPAQWGAKEGKKIEPSPPCAGGSK 463
MS+QA IEEKL Q + P+HL++INES HN PPGSESHFKV++V+ F+GKPL+ARHRM+N L EEL IHAL++ T P +W +E + SPPC GG K
Sbjct: 1 MSMQAVIEEKLSQQIHPAHLQVINESDNHNVPPGSESHFKVVIVADSFDGKPLIARHRMINEVLAEELQNKIHALALHTYAPDEW--QETGQAPDSPPCHGGGK 102
BLAST of mRNA_D-herbacea_F_contig1158.1157.1 vs. uniprot
Match: A0A4Z2EYD8_9TELE (BolA-like protein 1 n=1 Tax=Liparis tanakae TaxID=230148 RepID=A0A4Z2EYD8_9TELE) HSP 1 Score: 128 bits (321), Expect = 8.290e-34 Identity = 65/115 (56.52%), Postives = 82/115 (71.30%), Query Frame = 2
Query: 119 FEDVIDLDRCIMSLQASIEEKLRQDLQPSHLEIINESGMHNAPPGSESHFKVIVVSSKFEGKPLLARHRMVNAALKEELVEDIHALSMSTKTPAQWGAKEGKKIEPSPPCAGGSK 463
F +D DR +++SI KL + LQP HLE+ NES MH P GSESHF+V+VVSS+FEG PL+ RHR+VN ALKEEL +HAL++ KTPAQWG + +E SPPC GGS+
Sbjct: 25 FTPHMDPDRS-RPVESSIRTKLTEGLQPDHLEVHNESHMHAVPAGSESHFRVLVVSSRFEGLPLIQRHRLVNEALKEELSSSVHALAIQVKTPAQWGGRT--TLEKSPPCMGGSR 136
BLAST of mRNA_D-herbacea_F_contig1158.1157.1 vs. uniprot
Match: UPI00109BCE19 (bolA-like protein DDB_G0274169 isoform X1 n=2 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI00109BCE19) HSP 1 Score: 127 bits (320), Expect = 1.040e-33 Identity = 61/103 (59.22%), Postives = 76/103 (73.79%), Query Frame = 2
Query: 152 MSLQASIEEKLRQDLQPSHLEIINESGMHNAPPGSESHFKVIVVSSKFEGKPLLARHRMVNAALKEELVEDIHALSMSTKTPAQWGAKEGKKIEPSPPCAGGS 460
MS+QA+I +KL + QP H+E+INES MHN P GSE+HFKV+VVS+ F+ KPL+ RHRMVN LK EL +HALS+ KTP QW A G K+ SPPC GG+
Sbjct: 43 MSVQATITDKLTKKFQPQHMEVINESYMHNVPKGSETHFKVVVVSALFQDKPLIQRHRMVNDVLKNELESGVHALSIQAKTPTQWEAS-GHKVNMSPPCLGGA 144
BLAST of mRNA_D-herbacea_F_contig1158.1157.1 vs. uniprot
Match: D8LTH4_ECTSI (BolA protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTH4_ECTSI) HSP 1 Score: 128 bits (321), Expect = 1.530e-33 Identity = 66/102 (64.71%), Postives = 77/102 (75.49%), Query Frame = 2
Query: 158 LQASIEEKLRQDLQPSHLEIINESGMHNAPPGSESHFKVIVVSSKFEGKPLLARHRMVNAALKEELVEDIHALSMSTKTPAQWGAKEGKKIEPSPPCAGGSK 463
+Q +IE +L + L P HLE+INES MH+ P ESHFKVIVVS +FEGKPLLARHRMVNA EE+ +HALS+ KTPAQW A EG K+ PSPPC GGSK
Sbjct: 67 MQETIEARLSEALSPVHLEVINESHMHSGP-AKESHFKVIVVSDEFEGKPLLARHRMVNALFAEEMKGKMHALSIQGKTPAQWEA-EGHKVAPSPPCMGGSK 166
BLAST of mRNA_D-herbacea_F_contig1158.1157.1 vs. uniprot
Match: V9LGX4_CALMI (BolA-like protein 1 n=1 Tax=Callorhinchus milii TaxID=7868 RepID=V9LGX4_CALMI) HSP 1 Score: 127 bits (318), Expect = 2.270e-33 Identity = 60/102 (58.82%), Postives = 74/102 (72.55%), Query Frame = 2
Query: 158 LQASIEEKLRQDLQPSHLEIINESGMHNAPPGSESHFKVIVVSSKFEGKPLLARHRMVNAALKEELVEDIHALSMSTKTPAQWGAKEGKKIEPSPPCAGGSK 463
++ ++ EKL Q LQPSH+E+ NES H PPGSE+HFKV+VVS FEG + RHR+VN AL EEL +HALS+ KTP QW E ++EPSPPCAGGSK
Sbjct: 28 VERTVREKLEQALQPSHMEVTNESSGHAVPPGSETHFKVVVVSQAFEGLSAIQRHRLVNGALSEELAGTVHALSIHAKTPGQWA--ERPRVEPSPPCAGGSK 127
BLAST of mRNA_D-herbacea_F_contig1158.1157.1 vs. uniprot
Match: A0A7V5PGC8_9GAMM (Transcriptional regulator BolA n=1 Tax=Chromatiales bacterium TaxID=2026725 RepID=A0A7V5PGC8_9GAMM) HSP 1 Score: 125 bits (314), Expect = 2.370e-33 Identity = 61/104 (58.65%), Postives = 77/104 (74.04%), Query Frame = 2
Query: 152 MSLQASIEEKLRQDLQPSHLEIINESGMHNAPPGSESHFKVIVVSSKFEGKPLLARHRMVNAALKEELVEDIHALSMSTKTPAQWGAKEGKKIEPSPPCAGGSK 463
M++Q +IE KLR L+P +LE++NES MHN PPGSESHFKV +VS +FEG+ L+ RHRMVNA L EEL IHAL++ T TPA+W E ++ SPPC GG K
Sbjct: 1 MNMQQNIEAKLRAGLEPEYLEVVNESHMHNVPPGSESHFKVTIVSPRFEGERLVGRHRMVNALLAEELAGRIHALALHTYTPAEWA--ERQQTPQSPPCLGGGK 102 The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig1158.1157.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-herbacea_F_contig1158.1157.1 >prot_D-herbacea_F_contig1158.1157.1 ID=prot_D-herbacea_F_contig1158.1157.1|Name=mRNA_D-herbacea_F_contig1158.1157.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=107bp MSLQASIEEKLRQDLQPSHLEIINESGMHNAPPGSESHFKVIVVSSKFEGback to top mRNA from alignment at D-herbacea_F_contig1158:6083..13685- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-herbacea_F_contig1158.1157.1 ID=mRNA_D-herbacea_F_contig1158.1157.1|Name=mRNA_D-herbacea_F_contig1158.1157.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=7603bp|location=Sequence derived from alignment at D-herbacea_F_contig1158:6083..13685- (Desmarestia herbacea DmunF female)back to top Coding sequence (CDS) from alignment at D-herbacea_F_contig1158:6083..13685- >mRNA_D-herbacea_F_contig1158.1157.1 ID=mRNA_D-herbacea_F_contig1158.1157.1|Name=mRNA_D-herbacea_F_contig1158.1157.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=642bp|location=Sequence derived from alignment at D-herbacea_F_contig1158:6083..13685- (Desmarestia herbacea DmunF female)back to top |