mRNA_D-herbacea_F_contig1141.1085.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig1141.1085.1
Unique NamemRNA_D-herbacea_F_contig1141.1085.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
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BLAST of mRNA_D-herbacea_F_contig1141.1085.1 vs. uniprot
Match: D7FI15_ECTSI (zf-rbx1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI15_ECTSI)

HSP 1 Score: 70.5 bits (171), Expect = 3.140e-15
Identity = 29/39 (74.36%), Postives = 33/39 (84.62%), Query Frame = 1 
Query:    1 MEDMTSMQKITRLPACLHTFHSKCVSRWLKGQNTCPIDK 117
            MEDM   +KITRLPACLHTFHSKC+S+WLK +  CPIDK
Sbjct:    1 MEDMKPREKITRLPACLHTFHSKCISKWLKEKPCCPIDK 39
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BLAST of mRNA_D-herbacea_F_contig1141.1085.1 vs. uniprot
Match: A0A6H5JDI2_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDI2_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 4.940e-13
Identity = 29/39 (74.36%), Postives = 33/39 (84.62%), Query Frame = 1 
Query:    1 MEDMTSMQKITRLPACLHTFHSKCVSRWLKGQNTCPIDK 117
            MEDM   +KITRLPACLHTFHSKC+S+WLK +  CPIDK
Sbjct:  821 MEDMKPREKITRLPACLHTFHSKCISKWLKEKPCCPIDK 859
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig1141.1085.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FI15_ECTSI3.140e-1574.36zf-rbx1 domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5JDI2_9PHAE4.940e-1374.36RING-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig1141contigD-herbacea_F_contig1141:46769..47263 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size132
Cds size132
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927543.4374645-CDS-D-herbacea_F_contig1141:46768..468351622927543.4374645-CDS-D-herbacea_F_contig1141:46768..46835Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1141 46769..46835 -
1690790224.9542546-CDS-D-herbacea_F_contig1141:46768..468351690790224.9542546-CDS-D-herbacea_F_contig1141:46768..46835Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1141 46769..46835 -
1622927543.4637806-CDS-D-herbacea_F_contig1141:47198..472631622927543.4637806-CDS-D-herbacea_F_contig1141:47198..47263Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1141 47199..47263 -
1690790224.967485-CDS-D-herbacea_F_contig1141:47198..472631690790224.967485-CDS-D-herbacea_F_contig1141:47198..47263Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1141 47199..47263 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig1141.1085.1prot_D-herbacea_F_contig1141.1085.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig1141 46769..47263 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig1141.1085.1

>prot_D-herbacea_F_contig1141.1085.1 ID=prot_D-herbacea_F_contig1141.1085.1|Name=mRNA_D-herbacea_F_contig1141.1085.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=44bp
MEDMTSMQKITRLPACLHTFHSKCVSRWLKGQNTCPIDKGWST*
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mRNA from alignment at D-herbacea_F_contig1141:46769..47263-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig1141.1085.1 ID=mRNA_D-herbacea_F_contig1141.1085.1|Name=mRNA_D-herbacea_F_contig1141.1085.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=495bp|location=Sequence derived from alignment at D-herbacea_F_contig1141:46769..47263- (Desmarestia herbacea DmunF female)
ATGGAGGACATGACGTCCATGCAGAAAATCACCCGTCTGCCAGCCTGCCT
GCACACATTCCACAGGTACACCTAACTAGTCTTGAAGCTCGCAACATTTA
ACGTTCCTTTCTTTTCTAGAGCAGTTGTTATTTTTGAGTCGAAATCCGCT
GACTTAGGTGTGATCCTTCTGTTCATAACGGCGGTGCGAATATCGTGGCG
TCTCGTCCCAAGTCCTCGCGACACGTTACGTAATCTACTTGGGATTAGTG
AGTATAACATCTGTCATGTGGCACACTACGGCAGCAAGCGCTATGAATCC
ATTATCATTATTATTACTGTTGACAGCACTCTGTGCAGTAAGTAGACTTC
CTCACACCGCGATCGTCGCGCGTCCCTCGCTTCTCTCTCTTGACTCTCAC
GACGCATTCCTCTCTGCTCCTCCCTCAGCAAGTGCGTCTCTCGGTGGCTC
AAAGGACAAAACACGTGTCCTATCGATAAGGGGTGGTCAACGTGA
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Coding sequence (CDS) from alignment at D-herbacea_F_contig1141:46769..47263-

>mRNA_D-herbacea_F_contig1141.1085.1 ID=mRNA_D-herbacea_F_contig1141.1085.1|Name=mRNA_D-herbacea_F_contig1141.1085.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=264bp|location=Sequence derived from alignment at D-herbacea_F_contig1141:46769..47263- (Desmarestia herbacea DmunF female)
ATGGAGGACATGACGTCCATGCAGAAAATCACCCGTCTGCCAGCCTGCCT
GCACACATTCCACAGATGGAGGACATGACGTCCATGCAGAAAATCACCCG
TCTGCCAGCCTGCCTGCACACATTCCACAGCAAGTGCGTCTCTCGGTGGC
TCAAAGGACAAAACACGTGTCCTATCGATAAGGGGTGGTCAACGTGACAA
GTGCGTCTCTCGGTGGCTCAAAGGACAAAACACGTGTCCTATCGATAAGG
GGTGGTCAACGTGA
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