mRNA_D-herbacea_F_contig114.1084.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig114.1084.1
Unique NamemRNA_D-herbacea_F_contig114.1084.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig114.1084.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig114contigD-herbacea_F_contig114:651966..653382 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size641
Cds size354
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig114.1084.1prot_D-herbacea_F_contig114.1084.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig114 652089..653218 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927537.2958467-UTR-D-herbacea_F_contig114:651965..6520881622927537.2958467-UTR-D-herbacea_F_contig114:651965..652088Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig114 651966..652088 +
1690790222.0157883-UTR-D-herbacea_F_contig114:651965..6520881690790222.0157883-UTR-D-herbacea_F_contig114:651965..652088Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig114 651966..652088 +
1622927537.3499-UTR-D-herbacea_F_contig114:653218..6533821622927537.3499-UTR-D-herbacea_F_contig114:653218..653382Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig114 653219..653382 +
1690790222.0649903-UTR-D-herbacea_F_contig114:653218..6533821690790222.0649903-UTR-D-herbacea_F_contig114:653218..653382Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig114 653219..653382 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927537.3089066-CDS-D-herbacea_F_contig114:652088..6522371622927537.3089066-CDS-D-herbacea_F_contig114:652088..652237Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig114 652089..652237 +
1690790222.0299034-CDS-D-herbacea_F_contig114:652088..6522371690790222.0299034-CDS-D-herbacea_F_contig114:652088..652237Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig114 652089..652237 +
1622927537.3227012-CDS-D-herbacea_F_contig114:652860..6530081622927537.3227012-CDS-D-herbacea_F_contig114:652860..653008Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig114 652861..653008 +
1690790222.039247-CDS-D-herbacea_F_contig114:652860..6530081690790222.039247-CDS-D-herbacea_F_contig114:652860..653008Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig114 652861..653008 +
1622927537.3352785-CDS-D-herbacea_F_contig114:653161..6532181622927537.3352785-CDS-D-herbacea_F_contig114:653161..653218Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig114 653162..653218 +
1690790222.056117-CDS-D-herbacea_F_contig114:653161..6532181690790222.056117-CDS-D-herbacea_F_contig114:653161..653218Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig114 653162..653218 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig114.1084.1

>prot_D-herbacea_F_contig114.1084.1 ID=prot_D-herbacea_F_contig114.1084.1|Name=mRNA_D-herbacea_F_contig114.1084.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=118bp
MSPPQKRAEQDAADRKDKRWTNTERSRTWRGSNLLRLRRRRRKRAQRRTR
RTNCDPLVSITFAEENFRPLPCLACIRKLGRGTNYLRGKNNGTPLMRYMG
GLDWCSTRQAPAPWAPF*
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mRNA from alignment at D-herbacea_F_contig114:651966..653382+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig114.1084.1 ID=mRNA_D-herbacea_F_contig114.1084.1|Name=mRNA_D-herbacea_F_contig114.1084.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=1417bp|location=Sequence derived from alignment at D-herbacea_F_contig114:651966..653382+ (Desmarestia herbacea DmunF female)
AGGCTTAAATGTAAACCTGGTCTCGGTGTTGCTGCACTGCAAGAATGGCG
ACCGATTTGTAGATTCAGATTGTGACATAACGGTTCGCTTCTTGACTGTG
CCGGCGACATATATGTGCCGGTGATGTCTCCACCACAAAAACGGGCAGAG
CAAGACGCTGCCGACCGCAAAGACAAAAGATGGACAAATACGGAGCGCAG
CAGGACGTGGCGTGGTTCCAACCTACTGCGACTGCGCCGCCGCCGAAGGA
AACGAGCACAACGAAGGACAAGGTACGCTGACAGGTCGTTGTATTTGTCG
CACTAAACGATAGGACAGTAATATTCTTCAGGCATTGTCGATGAGGTCGG
CGAGCCGGGCGTAGCGGTGAGATGGCTGTATTGCACGTCCAATCCATCGT
CGTCTACTGTCAGTATATGAGCAAATTAGTGTCAATGATAGTGTACTACT
GTTAACCGCTGCCGTGAAAACGACATATTTTTTTGGGTGGAGTGCAGACA
GACAGATAGACCCATCGGAACCGTCATTTCGAGAAATAGAGACTCCGAAC
GGAACAGGAAGTTGGTCACGGCTCAAATAGACATGGCAGGTTTCAGATGT
TGTCGCTCTGGCATCTTGTGGTTGGTTCAAAGATAAGCTATAATACATCG
CGGTGGCGAGTTGGTGTACACGTCCACAGTATTTGTAAAATGCAACGTTG
CTGTGTGATTGTTGGGCGCGGCTCGTGGAAGAGGGCTCAAATGACATTGT
CTCGGCAGCCCCCGGCAAAAGCATATTCAAAGCGTAGCACGGTGGTTACA
GAATCAGACCCAGGTTGCGGCGGAAGTACTGCGTCCAACAATCTACTCTC
CTTGACCTTTGCCTGTACTCTGTCCGGTGGCCGATCCCGTTCCAGGCGCA
CCAACTGTGACCCATTGGTGTCCATCACTTTTGCTGAAGAGAATTTTCGC
CCGCTTCCTTGCCTCGCCTGCATCCGCAAGCTCGGAAGGGGAACCAACTA
CTTGCGCGGAAAGAATAACGGCACACCCCTCATGAGGTACATGGTGAGCC
TCACGCAAAATAGGCTGTTCGTAAACACTGTCGTTTACTGTACTTCCATC
TGCAAACGCAAGTGTGCCTGGTTCACTGTACCCAACCACTTTTTCTGCCC
CCCCCCCTTCCTGCCCCCCTCCTGTGTCTCTTCCGCGTTTGGGCAGGGAG
GCCTGGACTGGTGTTCGACTCGACAAGCGCCCGCGCCATGGGCTCCTTTT
TAATGCACTTTCGATTCTGCAATGTCTTGTGCAGCGTATGCTTTTTAGTC
GTTGTGTATGCCCCCCTCTTGTCGTGTGCATTTCCATAGGTCATTCCTAC
GTAGAGTGGTTTTTGTCGTGTACCTTTGCTTGGATCGTTCCTAGGGTGAG
TGGGATACAAGTTTCAC
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Coding sequence (CDS) from alignment at D-herbacea_F_contig114:651966..653382+

>mRNA_D-herbacea_F_contig114.1084.1 ID=mRNA_D-herbacea_F_contig114.1084.1|Name=mRNA_D-herbacea_F_contig114.1084.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=708bp|location=Sequence derived from alignment at D-herbacea_F_contig114:651966..653382+ (Desmarestia herbacea DmunF female)
ATGTCTCCACCACAAAAACGGGCAGAGCAAGACGCTGCCGACCGCAAAGA
CAAAAGATGGACAAATACGGAGCGCAGCAGGACGTGGCGTGGTTCCAACC
TACTGCGACTGCGCCGCCGCCGAAGGAAACGAGCACAACGAAGGACAAGA
TGTCTCCACCACAAAAACGGGCAGAGCAAGACGCTGCCGACCGCAAAGAC
AAAAGATGGACAAATACGGAGCGCAGCAGGACGTGGCGTGGTTCCAACCT
ACTGCGACTGCGCCGCCGCCGAAGGAAACGAGCACAACGAAGGACAAGGC
GCACCAACTGTGACCCATTGGTGTCCATCACTTTTGCTGAAGAGAATTTT
CGCCCGCTTCCTTGCCTCGCCTGCATCCGCAAGCTCGGAAGGGGAACCAA
CTACTTGCGCGGAAAGAATAACGGCACACCCCTCATGAGGTACATGGCGC
ACCAACTGTGACCCATTGGTGTCCATCACTTTTGCTGAAGAGAATTTTCG
CCCGCTTCCTTGCCTCGCCTGCATCCGCAAGCTCGGAAGGGGAACCAACT
ACTTGCGCGGAAAGAATAACGGCACACCCCTCATGAGGTACATGGGAGGC
CTGGACTGGTGTTCGACTCGACAAGCGCCCGCGCCATGGGCTCCTTTTTA
AGGAGGCCTGGACTGGTGTTCGACTCGACAAGCGCCCGCGCCATGGGCTC
CTTTTTAA
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