mRNA_D-herbacea_F_contig114.1078.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig114.1078.1
Unique NamemRNA_D-herbacea_F_contig114.1078.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
BLAST of mRNA_D-herbacea_F_contig114.1078.1 vs. uniprot
Match: D8LJR0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJR0_ECTSI)

HSP 1 Score: 140 bits (353), Expect = 9.830e-37
Identity = 63/84 (75.00%), Postives = 73/84 (86.90%), Query Frame = 1
Query:    1 ISSVVKGLTYPGLRDGPGTINRPGILGVRDRVCFVAHNHREETASSMRQRQDDGFSASKINLYEVNMIVKTVGHLLLQGYRPDQ 252
            IS++VKGLTYPGLRDGPGT NRP +LG+RDRVCFV H+H EE+A+SMRQRQDDG S SK+N YEV M+ KTV +LLLQGY PDQ
Sbjct: 1010 ISALVKGLTYPGLRDGPGTANRPHVLGIRDRVCFVGHHHNEESAASMRQRQDDGVSVSKVNGYEVRMVAKTVKYLLLQGYEPDQ 1093          
BLAST of mRNA_D-herbacea_F_contig114.1078.1 vs. uniprot
Match: A0A6H5JSW9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSW9_9PHAE)

HSP 1 Score: 137 bits (346), Expect = 8.650e-36
Identity = 61/84 (72.62%), Postives = 72/84 (85.71%), Query Frame = 1
Query:    1 ISSVVKGLTYPGLRDGPGTINRPGILGVRDRVCFVAHNHREETASSMRQRQDDGFSASKINLYEVNMIVKTVGHLLLQGYRPDQ 252
            IS++VKGLTYP LRDGPGT+NRP +LG+RDRVCFV H+H EE+A+SMRQR DDG S SK+N YEV M+ KTV +LLLQGY PDQ
Sbjct: 1002 ISALVKGLTYPRLRDGPGTVNRPPVLGIRDRVCFVGHHHNEESAASMRQRHDDGVSVSKVNRYEVRMVAKTVKYLLLQGYEPDQ 1085          
BLAST of mRNA_D-herbacea_F_contig114.1078.1 vs. uniprot
Match: A0A094AT23_9PEZI (Uncharacterized protein (Fragment) n=1 Tax=Pseudogymnoascus sp. VKM F-4281 (FW-2241) TaxID=1420906 RepID=A0A094AT23_9PEZI)

HSP 1 Score: 84.7 bits (208), Expect = 3.770e-17
Identity = 40/84 (47.62%), Postives = 56/84 (66.67%), Query Frame = 1
Query:    1 ISSVVKGLTYPGLRDGPGTINRPGILGVRDRVCFVAHNHREETASSMRQRQDDGFSASKINLYEVNMIVKTVGHLLLQGYRPDQ 252
            ISS V+ LTY  L D PGT+NRP I G++DRV F  HNH E  A+++  ++D+G   SK N++EV M++  V +L  QGY  D+
Sbjct: 2720 ISSFVRHLTYDNLLDAPGTMNRPLIRGLQDRVVFFNHNHSEVEAANISDKRDEGSKTSKTNVFEVEMVLSCVRYLGQQGYGTDK 2803          
BLAST of mRNA_D-herbacea_F_contig114.1078.1 vs. uniprot
Match: A0A094EU36_9PEZI (Uncharacterized protein n=1 Tax=Pseudogymnoascus sp. VKM F-4518 (FW-2643) TaxID=1420913 RepID=A0A094EU36_9PEZI)

HSP 1 Score: 83.2 bits (204), Expect = 1.300e-16
Identity = 40/84 (47.62%), Postives = 55/84 (65.48%), Query Frame = 1
Query:    1 ISSVVKGLTYPGLRDGPGTINRPGILGVRDRVCFVAHNHREETASSMRQRQDDGFSASKINLYEVNMIVKTVGHLLLQGYRPDQ 252
            ISS V+ LTY  L D PGT+NRP I G++DRV F  HNH E  A+++  ++D+G   SK N +EV M++  V +L  QGY  D+
Sbjct:  982 ISSFVRHLTYDNLLDAPGTMNRPLIRGLQDRVVFFNHNHWEVEAANIADKRDEGSKTSKTNAFEVEMVLSCVRYLGQQGYGTDK 1065          
BLAST of mRNA_D-herbacea_F_contig114.1078.1 vs. uniprot
Match: A0A8K0TEZ7_9PEZI (ATPase n=1 Tax=Plectosphaerella cucumerina TaxID=40658 RepID=A0A8K0TEZ7_9PEZI)

HSP 1 Score: 80.9 bits (198), Expect = 8.430e-16
Identity = 37/83 (44.58%), Postives = 55/83 (66.27%), Query Frame = 1
Query:    1 ISSVVKGLTYPGLRDGPGTINRPGILGVRDRVCFVAHNHREETASSMRQRQDDGFSASKINLYEVNMIVKTVGHLLLQGYRPD 249
            ISS+V+ +TYP LRD   T+NRP + G+  RV F+ H+  E  A  ++ R+D GF++SK N +E  M++K V +L  QGY+ D
Sbjct:  832 ISSLVREMTYPDLRDAEKTLNRPAVRGIVGRVVFINHDKSEVDAKELKDRKDIGFTSSKRNEHEARMVLKIVKYLGQQGYKTD 914          
BLAST of mRNA_D-herbacea_F_contig114.1078.1 vs. uniprot
Match: A0A167A8D2_CORFA (Aaa family ATPase n=1 Tax=Cordyceps fumosorosea (strain ARSEF 2679) TaxID=1081104 RepID=A0A167A8D2_CORFA)

HSP 1 Score: 80.1 bits (196), Expect = 1.580e-15
Identity = 39/83 (46.99%), Postives = 55/83 (66.27%), Query Frame = 1
Query:    1 ISSVVKGLTYPGLRDGPGTINRPGILGVRDRVCFVAHNHREETASSMRQRQDDGFSASKINLYEVNMIVKTVGHLLLQGYRPD 249
            IS +V+ +TYP L+DG  T++RP I G+RDRV FV H+  E TA+ +  R D   ++SK N +E  MI+KTV  L  QGY+ +
Sbjct: 1507 ISQLVRFMTYPDLKDGAKTLDRPQIRGLRDRVTFVNHSKPESTANDLGDRLDANQTSSKENKFEAQMILKTVKFLAQQGYKTE 1589          
BLAST of mRNA_D-herbacea_F_contig114.1078.1 vs. uniprot
Match: J4VQB9_BEAB2 (ATPase protein n=4 Tax=Hypocreales TaxID=5125 RepID=J4VQB9_BEAB2)

HSP 1 Score: 79.7 bits (195), Expect = 2.150e-15
Identity = 39/81 (48.15%), Postives = 54/81 (66.67%), Query Frame = 1
Query:    1 ISSVVKGLTYPGLRDGPGTINRPGILGVRDRVCFVAHNHREETASSMRQRQDDGFSASKINLYEVNMIVKTVGHLLLQGYR 243
            IS +V+ +TYP L+DG  T+NRP I G+RDRV FV H+  E +A+ +  R D   ++SK N +E  MI+KTV  L  QGY+
Sbjct:  888 ISQLVRFMTYPDLKDGEKTLNRPQIRGLRDRVTFVNHHQPESSANDLGDRLDANQTSSKENKFEAQMILKTVKFLAQQGYK 968          
BLAST of mRNA_D-herbacea_F_contig114.1078.1 vs. uniprot
Match: A0A409XD25_PSICY (Uncharacterized protein n=1 Tax=Psilocybe cyanescens TaxID=93625 RepID=A0A409XD25_PSICY)

HSP 1 Score: 79.3 bits (194), Expect = 2.950e-15
Identity = 36/84 (42.86%), Postives = 54/84 (64.29%), Query Frame = 1
Query:    1 ISSVVKGLTYPGLRDGPGTINRPGILGVRDRVCFVAHNHREETASSMRQRQDDGFSASKINLYEVNMIVKTVGHLLLQGYRPDQ 252
            IS++++ LTYP L D P T NRP +LGVRD + F+ H H E+  +++  + D   ++SK N YE  MI+K V +L  QGY  ++
Sbjct:  825 ISALIRRLTYPELVDAPKTSNRPNLLGVRDNIVFIQHEHPEDDHNALADKNDMASTSSKQNSYEAYMILKIVKYLAQQGYGTNE 908          
BLAST of mRNA_D-herbacea_F_contig114.1078.1 vs. uniprot
Match: A0A2T3AGU8_9PEZI (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Coniella lustricola TaxID=2025994 RepID=A0A2T3AGU8_9PEZI)

HSP 1 Score: 79.0 bits (193), Expect = 4.000e-15
Identity = 38/83 (45.78%), Postives = 51/83 (61.45%), Query Frame = 1
Query:    1 ISSVVKGLTYPGLRDGPGTINRPGILGVRDRVCFVAHNHREETASSMRQRQDDGFSASKINLYEVNMIVKTVGHLLLQGYRPD 249
            IS +V+ L YP L+DGP T +RP + G+  RV FV H H E     +  R+D G  +SK NL+E  M+VKTV +L  QGY  +
Sbjct:  835 ISRLVRELAYPELQDGPKTTDRPPVRGLNGRVIFVNHTHPETQDERITDRRDPGTKSSKENLFEAQMVVKTVRYLAQQGYTTN 917          
BLAST of mRNA_D-herbacea_F_contig114.1078.1 vs. uniprot
Match: A0A0C3JRU4_PISTI (Uncharacterized protein n=1 Tax=Pisolithus tinctorius Marx 270 TaxID=870435 RepID=A0A0C3JRU4_PISTI)

HSP 1 Score: 79.0 bits (193), Expect = 4.000e-15
Identity = 37/83 (44.58%), Postives = 52/83 (62.65%), Query Frame = 1
Query:    1 ISSVVKGLTYPGLRDGPGTINRPGILGVRDRVCFVAHNHREETASSMRQRQDDGFSASKINLYEVNMIVKTVGHLLLQGYRPD 249
            IS++++ LTYP L+D P T NR  I GV+  V FV H+H E+    +  R D G ++SK N YEV M+++ V +L  QGY  D
Sbjct:  829 ISTLIRALTYPDLKDAPKTQNRENIRGVQSNVIFVNHSHPEDEDKRITDRADGGSTSSKQNTYEVKMVLRIVRYLAQQGYGSD 911          
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig114.1078.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJR0_ECTSI9.830e-3775.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JSW9_9PHAE8.650e-3672.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A094AT23_9PEZI3.770e-1747.62Uncharacterized protein (Fragment) n=1 Tax=Pseudog... [more]
A0A094EU36_9PEZI1.300e-1647.62Uncharacterized protein n=1 Tax=Pseudogymnoascus s... [more]
A0A8K0TEZ7_9PEZI8.430e-1644.58ATPase n=1 Tax=Plectosphaerella cucumerina TaxID=4... [more]
A0A167A8D2_CORFA1.580e-1546.99Aaa family ATPase n=1 Tax=Cordyceps fumosorosea (s... [more]
J4VQB9_BEAB22.150e-1548.15ATPase protein n=4 Tax=Hypocreales TaxID=5125 RepI... [more]
A0A409XD25_PSICY2.950e-1542.86Uncharacterized protein n=1 Tax=Psilocybe cyanesce... [more]
A0A2T3AGU8_9PEZI4.000e-1545.78P-loop containing nucleoside triphosphate hydrolas... [more]
A0A0C3JRU4_PISTI4.000e-1544.58Uncharacterized protein n=1 Tax=Pisolithus tinctor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig114contigD-herbacea_F_contig114:491851..492126 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score141.0
Seed ortholog evalue2.8e-31
Seed eggNOG ortholog2880.D8LJR0
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Nfx1-type zinc finger-containing protein
EggNOG OGsCOG0464@1,COG1112@1,KOG0730@2759,KOG1807@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size276
Cds size276
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927542.2722368-CDS-D-herbacea_F_contig114:491850..4921261622927542.2722368-CDS-D-herbacea_F_contig114:491850..492126Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig114 491851..492126 -
1690790224.488567-CDS-D-herbacea_F_contig114:491850..4921261690790224.488567-CDS-D-herbacea_F_contig114:491850..492126Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig114 491851..492126 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig114.1078.1prot_D-herbacea_F_contig114.1078.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig114 491851..492126 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig114.1078.1

>prot_D-herbacea_F_contig114.1078.1 ID=prot_D-herbacea_F_contig114.1078.1|Name=mRNA_D-herbacea_F_contig114.1078.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=92bp
ISSVVKGLTYPGLRDGPGTINRPGILGVRDRVCFVAHNHREETASSMRQR
QDDGFSASKINLYEVNMIVKTVGHLLLQGYRPDQASYGFRI*
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mRNA from alignment at D-herbacea_F_contig114:491851..492126-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig114.1078.1 ID=mRNA_D-herbacea_F_contig114.1078.1|Name=mRNA_D-herbacea_F_contig114.1078.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=276bp|location=Sequence derived from alignment at D-herbacea_F_contig114:491851..492126- (Desmarestia herbacea DmunF female)
ATATCATCTGTGGTGAAAGGTCTCACCTACCCTGGATTGCGCGATGGTCC TGGCACTATCAACCGCCCTGGCATTCTTGGAGTTCGCGACCGCGTCTGCT TCGTGGCTCACAACCACAGGGAGGAGACGGCGTCTTCGATGCGCCAGCGT CAGGACGATGGCTTCTCGGCGTCAAAGATCAACCTGTACGAGGTTAACAT GATCGTCAAAACAGTGGGGCACCTGCTTCTGCAGGGCTATCGACCAGACC AGGCAAGCTATGGTTTTAGAATATAG
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Coding sequence (CDS) from alignment at D-herbacea_F_contig114:491851..492126-

>mRNA_D-herbacea_F_contig114.1078.1 ID=mRNA_D-herbacea_F_contig114.1078.1|Name=mRNA_D-herbacea_F_contig114.1078.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=552bp|location=Sequence derived from alignment at D-herbacea_F_contig114:491851..492126- (Desmarestia herbacea DmunF female)
ATATCATCTGTGGTGAAAGGTCTCACCTACCCTGGATTGCGCGATGGTCC
TGGCACTATCAACCGCCCTGGCATTCTTGGAGTTCGCGACCGCGTCTGCT
TCGTGGCTCACAACCACAGGGAGGAGACGGCGTCTTCGATGCGCCAGCGT
CAGGACGATGGCTTCTCGGCGTCAAAGATCAACCTGTACGAGGTTAACAT
GATCGTCAAAACAGTGGGGCACCTGCTTCTGCAGGGCTATCGACCAGACC
AGGCAAGCTATGGTTTTAGAATATAGATATCATCTGTGGTGAAAGGTCTC
ACCTACCCTGGATTGCGCGATGGTCCTGGCACTATCAACCGCCCTGGCAT
TCTTGGAGTTCGCGACCGCGTCTGCTTCGTGGCTCACAACCACAGGGAGG
AGACGGCGTCTTCGATGCGCCAGCGTCAGGACGATGGCTTCTCGGCGTCA
AAGATCAACCTGTACGAGGTTAACATGATCGTCAAAACAGTGGGGCACCT
GCTTCTGCAGGGCTATCGACCAGACCAGGCAAGCTATGGTTTTAGAATAT
AG
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