mRNA_D-herbacea_F_contig114.1074.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig114.1074.1
Unique NamemRNA_D-herbacea_F_contig114.1074.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig114.1074.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig114contigD-herbacea_F_contig114:375077..376205 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1129
Cds size570
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig114.1074.1prot_D-herbacea_F_contig114.1074.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig114 375420..375989 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927537.4401455-UTR-D-herbacea_F_contig114:375076..3754191622927537.4401455-UTR-D-herbacea_F_contig114:375076..375419Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig114 375077..375419 +
1690790222.0990577-UTR-D-herbacea_F_contig114:375076..3754191690790222.0990577-UTR-D-herbacea_F_contig114:375076..375419Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig114 375077..375419 +
1622927537.4653194-UTR-D-herbacea_F_contig114:375989..3762051622927537.4653194-UTR-D-herbacea_F_contig114:375989..376205Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig114 375990..376205 +
1690790222.115915-UTR-D-herbacea_F_contig114:375989..3762051690790222.115915-UTR-D-herbacea_F_contig114:375989..376205Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig114 375990..376205 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927537.4531262-CDS-D-herbacea_F_contig114:375419..3759891622927537.4531262-CDS-D-herbacea_F_contig114:375419..375989Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig114 375420..375989 +
1690790222.106728-CDS-D-herbacea_F_contig114:375419..3759891690790222.106728-CDS-D-herbacea_F_contig114:375419..375989Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig114 375420..375989 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig114.1074.1

>prot_D-herbacea_F_contig114.1074.1 ID=prot_D-herbacea_F_contig114.1074.1|Name=mRNA_D-herbacea_F_contig114.1074.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=190bp
MQASLSPHLPRHDEDSEAKQKPIVRAEAGGERFTGRTNPALSSRFAPGRF
PCCPVPEGCSATGRGEDCEPPSLRWSRPEHSRQARHPCPRRVRRSPSRPS
PAEQPCPEHPPTIYCSLLHCCGSVRTRSSLAAPPPTRPPNPHPRRQRQTI
HHHHPPEAYQPPLAVSPCPCSTPHQRRYRSSHSRARQPT*
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mRNA from alignment at D-herbacea_F_contig114:375077..376205+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig114.1074.1 ID=mRNA_D-herbacea_F_contig114.1074.1|Name=mRNA_D-herbacea_F_contig114.1074.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=1129bp|location=Sequence derived from alignment at D-herbacea_F_contig114:375077..376205+ (Desmarestia herbacea DmunF female)
CTTTGCCCCCTCTTTTGACTATCATACCAACGCCAAGTGATGGAACGGGC
TAGCACTTGGCCTATCACAAGCGAAACATAAGCGCGGCGCAGCGATGTTC
GACCGGGGGAACAAGCAACCTCGCACAGCACAAAAACCACCACCTGTCTA
CTACATGCAACCTCTTTAACGTACGTACCCCTCCCCCGTCCACAACACGA
GCACAACACAAACCAAAAGAAATTGCCATCATGAATGCGTCGGTCATCTA
CAACACCCAAGAAAAAAACAATCGCGGGGAAATACGCGACACTTAACACT
TTGACAGTAGGGCGACCTCGCGCAAAATACTCACGGAGTCGGCATGCAAG
CCTCTCTCTCCCCACACCTCCCACGACACGACGAGGACAGCGAAGCAAAA
CAAAAGCCAATAGTACGCGCGGAGGCGGGCGGGGAACGTTTCACGGGACG
TACGAACCCAGCGCTATCTTCACGATTTGCGCCTGGTCGATTTCCGTGCT
GCCCTGTTCCCGAAGGCTGTTCAGCAACTGGGCGAGGCGAAGATTGTGAG
CCGCCTTCTCTTCGATGGTCCAGGCCGGAGCACTCTCGCCAGGCGCGCCA
CCCCTGCCCCCGCAGAGTGCGTCGATCTCCTTCGCGCCCATCACCAGCGG
AGCAACCTTGCCCAGAGCATCCGCCGACGATATATTGCTCCCTGCTCCAT
TGTTGTGGTTCTGTTCGGACGCGAAGCTCGCTTGCGGCGCCGCCACCGAC
TCGTCCACCAAACCCGCACCCCCGACGGCAGCGCCAAACAATCCACCACC
ACCACCCTCCAGAGGCATACCAGCCTCCGCTCGCAGTTTCCCCTTGCCCT
TGCTCCACGCCTCACCAACGACGCTATCGAAGCTCCCACTCGAGGGCCCG
ACAGCCAACGTAGAGGAGGGCGCCCTGGCGGTGTCCGGTCGGACGGGTTC
GGGCAAGGTGGACAGGTGGCGACGGAACAGGTGATGGCTCGGCACAGCGA
GCCCACCACTCCTTGCCCTCTTATTTCCCCCTCCGCCCTCATCCGACGAG
AGACGAGAACTCCCTTTTTCGTCCCCGCGCTTCCCCACACCGACGAAGAC
ACACGCGCCGTCATCGCCCTCCCCGATCG
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Coding sequence (CDS) from alignment at D-herbacea_F_contig114:375077..376205+

>mRNA_D-herbacea_F_contig114.1074.1 ID=mRNA_D-herbacea_F_contig114.1074.1|Name=mRNA_D-herbacea_F_contig114.1074.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=1140bp|location=Sequence derived from alignment at D-herbacea_F_contig114:375077..376205+ (Desmarestia herbacea DmunF female)
ATGCAAGCCTCTCTCTCCCCACACCTCCCACGACACGACGAGGACAGCGA
AGCAAAACAAAAGCCAATAGTACGCGCGGAGGCGGGCGGGGAACGTTTCA
CGGGACGTACGAACCCAGCGCTATCTTCACGATTTGCGCCTGGTCGATTT
CCGTGCTGCCCTGTTCCCGAAGGCTGTTCAGCAACTGGGCGAGGCGAAGA
TTGTGAGCCGCCTTCTCTTCGATGGTCCAGGCCGGAGCACTCTCGCCAGG
CGCGCCACCCCTGCCCCCGCAGAGTGCGTCGATCTCCTTCGCGCCCATCA
CCAGCGGAGCAACCTTGCCCAGAGCATCCGCCGACGATATATTGCTCCCT
GCTCCATTGTTGTGGTTCTGTTCGGACGCGAAGCTCGCTTGCGGCGCCGC
CACCGACTCGTCCACCAAACCCGCACCCCCGACGGCAGCGCCAAACAATC
CACCACCACCACCCTCCAGAGGCATACCAGCCTCCGCTCGCAGTTTCCCC
TTGCCCTTGCTCCACGCCTCACCAACGACGCTATCGAAGCTCCCACTCGA
GGGCCCGACAGCCAACGTAGATGCAAGCCTCTCTCTCCCCACACCTCCCA
CGACACGACGAGGACAGCGAAGCAAAACAAAAGCCAATAGTACGCGCGGA
GGCGGGCGGGGAACGTTTCACGGGACGTACGAACCCAGCGCTATCTTCAC
GATTTGCGCCTGGTCGATTTCCGTGCTGCCCTGTTCCCGAAGGCTGTTCA
GCAACTGGGCGAGGCGAAGATTGTGAGCCGCCTTCTCTTCGATGGTCCAG
GCCGGAGCACTCTCGCCAGGCGCGCCACCCCTGCCCCCGCAGAGTGCGTC
GATCTCCTTCGCGCCCATCACCAGCGGAGCAACCTTGCCCAGAGCATCCG
CCGACGATATATTGCTCCCTGCTCCATTGTTGTGGTTCTGTTCGGACGCG
AAGCTCGCTTGCGGCGCCGCCACCGACTCGTCCACCAAACCCGCACCCCC
GACGGCAGCGCCAAACAATCCACCACCACCACCCTCCAGAGGCATACCAG
CCTCCGCTCGCAGTTTCCCCTTGCCCTTGCTCCACGCCTCACCAACGACG
CTATCGAAGCTCCCACTCGAGGGCCCGACAGCCAACGTAG
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