mRNA_D-herbacea_F_contig114.1071.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig114.1071.1
Unique NamemRNA_D-herbacea_F_contig114.1071.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
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BLAST of mRNA_D-herbacea_F_contig114.1071.1 vs. uniprot
Match: A0A6H5KXH7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXH7_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 5.950e-8
Identity = 30/47 (63.83%), Postives = 35/47 (74.47%), Query Frame = 1 
Query:  496 DQKSELDDGDLYEDFVDLRLQEVDKLFPEGLAGGTCGGLERATSRGT 636
            D+ + LDDGD YEDF DLRL E + +FPEGLAGG  G LERA + GT
Sbjct:  134 DRLARLDDGDKYEDFFDLRLAEAETIFPEGLAGGRQGALERAMAGGT 180
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BLAST of mRNA_D-herbacea_F_contig114.1071.1 vs. uniprot
Match: D8LJR3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJR3_ECTSI)

HSP 1 Score: 62.4 bits (150), Expect = 8.340e-8
Identity = 30/47 (63.83%), Postives = 35/47 (74.47%), Query Frame = 1 
Query:  496 DQKSELDDGDLYEDFVDLRLQEVDKLFPEGLAGGTCGGLERATSRGT 636
            D+ + LDDGD YEDF DLRL E + +FPEGLAGG  G LERA + GT
Sbjct:  135 DRLARLDDGDKYEDFFDLRLAEAETIFPEGLAGGGQGALERAMAGGT 181
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig114.1071.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KXH7_9PHAE5.950e-863.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJR3_ECTSI8.340e-863.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig114contigD-herbacea_F_contig114:339082..343079 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.5
Seed ortholog evalue1.1e-06
Seed eggNOG ortholog2880.D8LJR3
Preferred nameDAP3
KEGG koko:K06072,ko:K17408
Hectar predicted targeting categorysignal peptide
GOsGO:0000313,GO:0000314,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005759,GO:0005761,GO:0005763,GO:0005840,GO:0006412,GO:0006414,GO:0006415,GO:0006518,GO:0006807,GO:0006915,GO:0006996,GO:0007005,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0008219,GO:0008637,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0012501,GO:0015935,GO:0016020,GO:0016043,GO:0019538,GO:0019866,GO:0022411,GO:0023052,GO:0031090,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032543,GO:0032984,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0065007,GO:0070013,GO:0070125,GO:0070126,GO:0071704,GO:0071840,GO:0097190,GO:0098798,GO:0140053,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.mitochondrial translation
EggNOG OGsKOG3928@1,KOG3928@2759
EC1.14.99.29
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko01000,ko03011,ko03029
Exons2
Model size641
Cds size639
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927537.1439774-CDS-D-herbacea_F_contig114:339083..3391941622927537.1439774-CDS-D-herbacea_F_contig114:339083..339194Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig114 339084..339194 -
1690790221.940695-CDS-D-herbacea_F_contig114:339083..3391941690790221.940695-CDS-D-herbacea_F_contig114:339083..339194Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig114 339084..339194 -
1622927537.1587336-CDS-D-herbacea_F_contig114:342551..3430791622927537.1587336-CDS-D-herbacea_F_contig114:342551..343079Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig114 342552..343079 -
1690790221.9517527-CDS-D-herbacea_F_contig114:342551..3430791690790221.9517527-CDS-D-herbacea_F_contig114:342551..343079Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig114 342552..343079 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig114.1071.1prot_D-herbacea_F_contig114.1071.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig114 339084..343079 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig114.1071.1

>prot_D-herbacea_F_contig114.1071.1 ID=prot_D-herbacea_F_contig114.1071.1|Name=mRNA_D-herbacea_F_contig114.1071.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=213bp
HFGSLVWVPSLSFKLVGSMATSVGQLRLRGRSQGAQLLLGLFRSSQRHGV
AKNDCTRGGYGLALLRGRQSSSTAGSTDSGDVRGMHCYCDAPGMGNAVVG
TMASRGTSRPRLPLKFRGLSSTARSSRDHRRQEGADASGGVRTDFSFKES
RYDIELGCYPWEKEHDQKSELDDGDLYEDFVDLRLQEVDKLFPEGLAGGT
CGGLERATSRGTP
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mRNA from alignment at D-herbacea_F_contig114:339082..343079-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig114.1071.1 ID=mRNA_D-herbacea_F_contig114.1071.1|Name=mRNA_D-herbacea_F_contig114.1071.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=3998bp|location=Sequence derived from alignment at D-herbacea_F_contig114:339082..343079- (Desmarestia herbacea DmunF female)
CACTTCGGTTCTCTTGTGTGGGTACCATCGTTGAGTTTCAAGCTAGTGGG
GTCCATGGCTACCAGTGTTGGGCAGCTTCGGTTGCGAGGGAGATCGCAGG
GAGCTCAACTCCTGCTCGGCCTGTTTCGGTCTTCCCAACGGCATGGTGTC
GCCAAGAACGACTGCACCAGGGGTGGCTACGGGCTAGCATTGCTCAGAGG
CCGACAGTCATCTTCGACAGCAGGGAGCACCGATAGCGGGGATGTACGAG
GCATGCATTGCTATTGTGATGCACCAGGGATGGGCAATGCCGTTGTTGGG
ACGATGGCTTCCCGCGGGACTTCGAGACCACGGCTGCCTCTGAAGTTTAG
AGGTCTTAGCTCGACCGCCAGGTCTTCGCGAGACCACAGGCGACAGGAGG
GAGCGGATGCCTCGGGGGGTGTTCGCACAGATTTCAGCTTTAAGGAGTCG
AGATACGATATTGAGCTGGGCTGTTACCCGTGGGAGAAAGAGCACGACCA
AAAATCGGAGTTGGATGATGGGGATTTGGTGAGTTTTGTTTTTGGTGTGC
TACATGAGACAGGCTTAGATCGTATAGCACTCGTACAGCACATATCGCAC
ATGTTCTTGGACGATGCATGTTGTTCTCGGTACGAGTACGAGGTACTGTA
CCGGAAATGGCAGTGCGGTTGTCTACAGCAGCAGTTGTTGTCTGTGGTAT
ACATATGATAATGCATGTGCGTGTAGAGCTCTAGAGTAGAGTCCTGGCGG
GTATTTGTGGTACATTTTGAATTTGGCACGCGTATCGGTCTGTGATGGTG
CCGTTCGCTGCAATGACCGGCTTCTTGTGTCCCGCCGCTCGCACTGTTGT
AATACTACTACTGTTGTCGCTTGTCTGTTGTACGAGTATTGCTGTGGTGT
GGGGTGCCCTAGGACATCTACAGTAGAAAATCCCCAAGGCTGGTACTATC
ATCGAGCTAGTACTACTCGTATTGATTTGTGTTTGGAGCTGGCGTTATTA
TAGTATTTATTATTACAAATACATCAGCCGTGACGTTCCACGCTGGTTCG
GGGGGGGCGAGGGATTATCGTCAACCTCACTTGTGTGATATTTCGGTCGC
GCTATTTCGGTCGCGCGGAGTCTGTCGGTCCGCAGATGATGTGCAACGCA
GTGACTCTCCTGGGGTGTTCCCCGGCTCTACAGGATAATGGCGAGAAGGG
TAATTTGGATGTCATTATCATCTTGTGCACTATCGGTAGACTGCAATCTT
TCTGAGGGGGATGGGGGAAAACAGCAAGCCAAGCAAAAATATAAACATAT
ACGAAGTACAAGGTTTCTGCGGCCGACGCCGCAACGCTTAAATAATGAAA
GCGAGTTGCCAAGGCCAAAGCAGGATATAGTAGCCACTTTTAAATACTAC
AGATATCATGGTGGCCCCTAATAAATAGGCCCGAAAAAGGGTGAAGGCGG
GAGAAGTTCTACCCTTACGCTTCCCCCAATTGTTATTTGAATATTACACG
TATATCATCGGTGGAAAGCCTGTGATCAACCGCGTTGTTTAAACGAATCG
GATCCGGGATTAACGCAGTGGCAGTTATTAAGATGCAGGCGCCAACGTGG
AATAATCGATGGATGATGGCATTGCTGCGAACCGGGCGATCTGATTGAAC
ATAAGAAAATGGCACAGACAATCACATCGAAAAAAGGCCCGATCGGAAAT
CGCCTTTTTCGATCCATTGTACAGTACCAGGTACGCGACAACACCTAAGA
AACTCTTAAATTGGTCGAGGCTCGCGGCTTACTCTCATGACAACGTTGAG
CATAGGCTCGTAATAGACTATTACATAGGGTTGAGAGTGGTGCTCTAGAC
CGAGCAAAAATGCTCTGCAGCAATTTCCAACAAACGCGAAAATTGAAAAA
TTCCAGCCTCAGATTCTTATTTAACTCCCAATTAATGCTGTCGCGTACTA
CTGTTGTATTCGACTGTTGGATAAGAAATGGCCTAACGAGCGAAAAAAGT
CCACAATCGTCAATACGCTACAAGAACGAACGACGCTGCAACAGCACATA
GAACCGTGACAATACAATTACGAAGGAAGCGTGAAGCTCCAGATACGACG
GCAGCACTACTCGCGAGTACGTCGAACGGATACCTGCGGTATAGTGTTGG
TTAGGTCAGTTTACACATCGCCCAGTATGAGTTTTGTTGGTGTACCTATT
CGGTCCTGTGTACACCCTTATTTTTGTGTTTTTCTGTGTTTTCCGGATCT
TCCTACATAGGGCTCAGCACTTGTGTAACCACGGGCTAGATCTTGAACGA
TGAACTAATGTGTGAATCAATACAATCAAAAAGGATAATAGGTAAAGCAA
CTCACCGCAACCGCAACATGAAATGCGCCAAATAAGACGAAATAAATGCA
TCAAAATTTAGGCACAAAACAGACAGCAGACTCAACCGTCAAGATTGGAA
GTACGCTACTGTTGTTGTAGTATGATAGTAGTGCGCGAAGGTTACGCAGC
AACAGCACGAGGGAGGCCGCCAGAAACAAGTAATCGTAGCACAGACAGAC
ACAGACTGCGCTCTTCAGGCATGCGGAGAAGTGGAGAGGAGAGTTGGCTC
GTGTGGCTGGCAGAGGAATAATGGCTATAGAGAAGTAGGCCACATTGCTG
CGGATGGAGTGATCTTAATATGGTTACTTAGTGTGTAATTAAAAGAAACG
GACACAGAGGAACCCTCGCAAGCTCAACTGTCAAAATGCAACAAACAACA
CCTGTTGTTTCAGCACGAAGGTCACCAGAAACACCAATAAATTAGCACAG
ACACGGGCTACACGTTTCAGGTTGTAGAGGCGAGGAGGAGGGCTGACTGC
CTGGAAGAGAGAGAGATGGTGTGATGCGTGGTGTGTGCAGAATTCACTCT
TTTTTTTTTTTTTTTTTTTCGTCCCTTTTATTGTCTTCGCCCTAGTCTTA
CTCTAGCTCCATCTCTCTTCGTAACTCAGATCCGGGGTCACATAGTAGGC
GCTCCTCCCTCCTTCCCACTACGGTACGTGCCTACATTTTTATCGCGAGA
AGAGTGCAGCACTTTCTTCCCTCGTCGACTTTCATCGAATTGTGCTTACT
CGCGCTCTTCTTGCGTTTTCCGCGACGGCAAATGACACAGAAAAGTGCCA
CCGGGAATCGAACCCCCAACTTCCGCCAACAGAGGAAATACCCTAGCCAT
TAGACCACTGGGTCACCCCTGTCCCACTGCGCAGCAAAAAACAACTAGAA
TGGTGGATAGATGTACATATACTCACATCTCACATCGCTCCGAGTACAGA
CAGGGCAACAAAAAACGAAACGGATGAACATATCCGAGCGGAGATGTAGA
TGTCCAGCCGGAACCAATGAGAAATATGGGCAAAAATGTTTGGGAGTGGC
CGATGGGGAAAACGGAAAAAAAATGCTGTGCCGTCGGGCGCTCTCTCGTG
GACTGCGAGAACAGCAAATAATGGAGCGATTCTAGCAAAAACACAATTAT
TGAAAAGTCTTTAAACAACAAGCAAAACCAAATAGACAAGAACAGAAAAG
TCTAATATATTTTAAGACTCCCTGGTTTGGTGAAGCTGCGTATACATAGT
ACTGTTGTTGTTTTCACATGATACGCACGTGAGAAAATCGGGTCCAACCG
CGCACGTCTCGCACGGCCGTCCACGTCGCAAGCCCTACCTATCCCCTGAC
TGTCTTGGCTGGAGGCGGGAGCACACGCACCACACACGCGAGCCCCCCTC
ATACCCAGTCGTTGCTTGTCCCACTTCCACGTTTGGTTCACCAGTACGTT
TGGTTCACCAGTACAAATCCCAATCCTACTGTTGTGCCCACTGCGAGTAC
CCACCCCCAACCCCCGTACCTCCCCCGTGTGTCAGTACGAAGACTTCGTG
GACCTCAGACTACAAGAGGTCGACAAGCTCTTCCCGGAAGGTCTAGCAGG
CGGCACATGCGGGGGGCTGGAGCGAGCCACGTCCCGCGGCACCCCGAC
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Coding sequence (CDS) from alignment at D-herbacea_F_contig114:339082..343079-

>mRNA_D-herbacea_F_contig114.1071.1 ID=mRNA_D-herbacea_F_contig114.1071.1|Name=mRNA_D-herbacea_F_contig114.1071.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=1278bp|location=Sequence derived from alignment at D-herbacea_F_contig114:339082..343079- (Desmarestia herbacea DmunF female)
CACTTCGGTTCTCTTGTGTGGGTACCATCGTTGAGTTTCAAGCTAGTGGG
GTCCATGGCTACCAGTGTTGGGCAGCTTCGGTTGCGAGGGAGATCGCAGG
GAGCTCAACTCCTGCTCGGCCTGTTTCGGTCTTCCCAACGGCATGGTGTC
GCCAAGAACGACTGCACCAGGGGTGGCTACGGGCTAGCATTGCTCAGAGG
CCGACAGTCATCTTCGACAGCAGGGAGCACCGATAGCGGGGATGTACGAG
GCATGCATTGCTATTGTGATGCACCAGGGATGGGCAATGCCGTTGTTGGG
ACGATGGCTTCCCGCGGGACTTCGAGACCACGGCTGCCTCTGAAGTTTAG
AGGTCTTAGCTCGACCGCCAGGTCTTCGCGAGACCACAGGCGACAGGAGG
GAGCGGATGCCTCGGGGGGTGTTCGCACAGATTTCAGCTTTAAGGAGTCG
AGATACGATATTGAGCTGGGCTGTTACCCGTGGGAGAAAGAGCACGACCA
AAAATCGGAGTTGGATGATGGGGATTTGCACTTCGGTTCTCTTGTGTGGG
TACCATCGTTGAGTTTCAAGCTAGTGGGGTCCATGGCTACCAGTGTTGGG
CAGCTTCGGTTGCGAGGGAGATCGCAGGGAGCTCAACTCCTGCTCGGCCT
GTTTCGGTCTTCCCAACGGCATGGTGTCGCCAAGAACGACTGCACCAGGG
GTGGCTACGGGCTAGCATTGCTCAGAGGCCGACAGTCATCTTCGACAGCA
GGGAGCACCGATAGCGGGGATGTACGAGGCATGCATTGCTATTGTGATGC
ACCAGGGATGGGCAATGCCGTTGTTGGGACGATGGCTTCCCGCGGGACTT
CGAGACCACGGCTGCCTCTGAAGTTTAGAGGTCTTAGCTCGACCGCCAGG
TCTTCGCGAGACCACAGGCGACAGGAGGGAGCGGATGCCTCGGGGGGTGT
TCGCACAGATTTCAGCTTTAAGGAGTCGAGATACGATATTGAGCTGGGCT
GTTACCCGTGGGAGAAAGAGCACGACCAAAAATCGGAGTTGGATGATGGG
GATTTGTACGAAGACTTCGTGGACCTCAGACTACAAGAGGTCGACAAGCT
CTTCCCGGAAGGTCTAGCAGGCGGCACATGCGGGGGGCTGGAGCGAGCCA
CGTCCCGCGGCACCCCGTACGAAGACTTCGTGGACCTCAGACTACAAGAG
GTCGACAAGCTCTTCCCGGAAGGTCTAGCAGGCGGCACATGCGGGGGGCT
GGAGCGAGCCACGTCCCGCGGCACCCCG
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