mRNA_D-herbacea_F_contig1134.1045.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig1134.1045.1
Unique NamemRNA_D-herbacea_F_contig1134.1045.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
BLAST of mRNA_D-herbacea_F_contig1134.1045.1 vs. uniprot
Match: D7FT95_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT95_ECTSI)

HSP 1 Score: 104 bits (260), Expect = 4.640e-24
Identity = 58/141 (41.13%), Postives = 77/141 (54.61%), Query Frame = 1
Query:    1 GSSRCLDAFSIALNQADSSGWYSSTLQLQLASLQFCVVCRNVSTLHLIVKDGMQCSILEDAQASDD--GVKKQGHTRVPTFRPLILTWKLPTSLLSQFTSGALANLKELIIGDGFADNAIVGVVWPASLQQLTFGSSFNQA 417
            G SRCLDA  IALNQA    WY+ST+QLQLASL+ C  CR++  L L V+ G    +      + +   VK++  TRVP  R   +TWKLP   L   T  A + +    +G GF D+   G+ WP  L  L  G  FN++
Sbjct:    8 GPSRCLDALIIALNQASGGEWYTSTMQLQLASLELCASCRSMHLLKLNVQHGTPTRLWRGTATTRETRSVKRRNVTRVPVVRARTVTWKLPGLALRNMTGDAWSEVTTFSLGPGFDDDLPRGIQWPEKLTLLGLGPGFNRS 148          
BLAST of mRNA_D-herbacea_F_contig1134.1045.1 vs. uniprot
Match: A0A6H5JA08_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA08_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 7.090e-22
Identity = 56/141 (39.72%), Postives = 75/141 (53.19%), Query Frame = 1
Query:    1 GSSRCLDAFSIALNQADSSGWYSSTLQLQLASLQFCVVCRNVSTLHLIVKDGMQCSILEDAQASDD--GVKKQGHTRVPTFRPLILTWKLPTSLLSQFTSGALANLKELIIGDGFADNAIVGVVWPASLQQLTFGSSFNQA 417
            G SRCLDA  IALNQA    WY+ST+QLQL SL+ C  CR++  L L V+ G    +      + +   VK++  TRVP  R   +TWKLP   L   T  A + +    +G GF D+   G+ WP  L     G  FN++
Sbjct:   39 GPSRCLDALIIALNQASGGEWYTSTMQLQLTSLELCAACRSMHLLKLNVQHGTPPRLWRGTATTRETRSVKRRNVTRVPVVRARTVTWKLPGVALRNMTGDAWSEVTTFSLGPGFDDDLPRGIQWPEKLTLFGVGPGFNRS 179          
BLAST of mRNA_D-herbacea_F_contig1134.1045.1 vs. uniprot
Match: D7FXS2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXS2_ECTSI)

HSP 1 Score: 95.9 bits (237), Expect = 2.490e-21
Identity = 58/141 (41.13%), Postives = 81/141 (57.45%), Query Frame = 1
Query:    1 GSSRCLDAFSIALNQA-DSSGWYSSTLQLQLASLQFCVVCRNVSTLHLIVKDGMQCSILEDAQASDD---GVKKQGHTRVPTFRPLILTWKLPTSLLSQFTSGALANLKELIIGDGFADNAIVGVVWPASLQQLTFGSSFN 411
            G  RCL+AF++ALN + D + WY+ST +LQLASLQFCV CR V +LHL V +    + L +  A+ +   G K+   T VP FRP  +TW  P  LLS       A ++  ++     D  +  VVWP  L++L FG  F+
Sbjct:    3 GPGRCLEAFAVALNTSCDGNVWYTSTKELQLASLQFCVKCRKVPSLHLAVNNAHVPARLWNDHAATEARTGAKRPSTTPVPVFRPREVTWGRPAWLLSDICL-VFAKVERFLVRQ---DTVVDDVVWPCRLKKLFFGEGFD 139          
BLAST of mRNA_D-herbacea_F_contig1134.1045.1 vs. uniprot
Match: A0A6H5JRF9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRF9_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 1.500e-19
Identity = 57/158 (36.08%), Postives = 78/158 (49.37%), Query Frame = 1
Query:   13 CLDAFSIALNQA-DSSGWYSSTLQLQLASLQFCVVCRNVSTLHLIVKDGMQCSILEDAQASDDGVKKQGHTRVPTFRPLILTWKLPTSLLSQFTSGALANLKELIIGDGFADN-----------------------AIVGVVWPASLQQLTFGSSFNQ 414
            CL+A  +ALN+  D   WY+ST +LQLASL FC+ CRN  T+HL V + +   +L  A A     K+   TRVP  R   +TW +PT+   +    A+ +++ L  GD F D+                        I  V WP  LQ +TFG  FNQ
Sbjct:   51 CLEALIVALNETCDGKSWYTSTKELQLASLDFCIACRNCQTVHLNVDEQIPRRLLASADAPPPHPKRLCWTRVPRLRSRRVTWNMPTAAKLRTPIFAMTDMEYLEFGDAFGDSLEAVPWPEHLRTMEFHHDSPFDQTIELVQWPPFLQNVTFGGDFNQ 208          
BLAST of mRNA_D-herbacea_F_contig1134.1045.1 vs. uniprot
Match: A0A6H5K4H1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4H1_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 8.270e-17
Identity = 57/139 (41.01%), Postives = 75/139 (53.96%), Query Frame = 1
Query:    4 SSRCLDAFSIALNQA--DSSGWYSSTLQLQLASLQFCVVCRNVSTLHLIVKDGMQCSILED-----AQASDDGVKKQGHTRVPTFRPLILTWKLPTSLLSQFTSGALANLKELIIGDGFADNAIVGVVWPASLQQLTFG 399
            SSRCL+AF +AL Q   D   WY ST QLQLASL FC+ CR+  TL L V D +   +L D     A  +  G  + G +RVP F    +TW   + +    +  ALA +   I+  GF + AI  V WP  L++L FG
Sbjct:   27 SSRCLEAFRVALQQTCLDRESWYVSTTQLQLASLPFCLACRDSVTLCLTVDDSIPRRLLADVGGNEAVVAPAGPCQCGRSRVPRFHAREVTWHRQSCVELSASIYALAEVDFFILDGGF-NRAIGAVAWPRKLRRLEFG 164          
BLAST of mRNA_D-herbacea_F_contig1134.1045.1 vs. uniprot
Match: A0A6H5JZZ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZZ4_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 5.740e-16
Identity = 49/132 (37.12%), Postives = 70/132 (53.03%), Query Frame = 1
Query:    4 SSRCLDAFSIALNQA-DSSGWYSSTLQLQLASLQFCVVCRNVSTLHLIVKDGMQCSILEDAQASDDGVKKQGHTRVPTFRPLILTWKLPTSLLSQFTSGALANLKELIIGDGFADNAIVGVVWPASLQQLTF 396
            S+ CL+A  +AL +  D   WY+ST +LQLASL+FC+ CR   TLHLIV   +   +L  A       K+    RVP  R   +TW +PT+   +    AL +L  L  G  F + ++  V WP  L+ + F
Sbjct:   33 SNTCLNAIYVALGETRDGKSWYTSTKELQLASLEFCMACRAYQTLHLIVDVRIPRMLLAAADGPPQHPKRLSRRRVPRLRARHVTWNMPTAAELRSPIFALMDLDHLDFGSAF-EGSLEAVTWPRRLESIAF 163          
BLAST of mRNA_D-herbacea_F_contig1134.1045.1 vs. uniprot
Match: A0A6H5KMU8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMU8_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 1.480e-15
Identity = 52/127 (40.94%), Postives = 70/127 (55.12%), Query Frame = 1
Query:   19 DAFSIALNQADS-SGWYSSTLQLQLASLQFCVVCRNVSTLHLIVKDGMQCSILED--AQASDDGVKKQGHTRVPTFRPLILTWKLPTSLLSQFTSGALANLKELIIGDGFADNAIVGVVWPASLQQL 390
            DA  IALNQ    +GWY+S LQLQLASLQ C+ CR V T HL V+  +   +     A+A+   +   G +RVP  RP  +TW L T L  +    A  ++  L+ GD F D  +  V WP  L++L
Sbjct:   17 DALDIALNQVSGVNGWYTSKLQLQLASLQLCLACRRVPTSHLTVERDVLALLWPHSAAEATRSRLVSLGQSRVPALRPRKVTWNLAT-LSMRHCGDAFESVDVLVFGDSF-DYRVDRVTWPPGLKKL 141          
BLAST of mRNA_D-herbacea_F_contig1134.1045.1 vs. uniprot
Match: A0A6H5JG83_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG83_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 3.130e-15
Identity = 50/136 (36.76%), Postives = 71/136 (52.21%), Query Frame = 1
Query:   31 IALNQA-DSSGWYSSTLQLQLASLQFCVVCRNVSTLHLIVKDGMQCSILEDAQASDDGVKKQGH----------TRVPTFRPLILTWKLPTSLLSQFTSGALANLKELIIGDGF--ADNAIVGVVWPASLQQLTFG 399
            +ALN+      WY ST+QLQLAS++FCV CR+VSTLHL V++G    +  D  +                     RVP FRP  +TW LP S+LS+ +  A  NL+ +   D    + ++  GV  P  L+ + FG
Sbjct:    2 VALNETYGGKQWYISTVQLQLASVEFCVACRSVSTLHLTVEEGTPRHLWADTWSDQSDXXXXXXXXXXXGRSVLVRVPPFRPREVTWNLPPSMLSEASKDAFKNLECMSFSDAVERSGDSFDGVALPRGLKSVVFG 137          
BLAST of mRNA_D-herbacea_F_contig1134.1045.1 vs. uniprot
Match: A0A6H5KPY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPY7_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 1.630e-14
Identity = 56/160 (35.00%), Postives = 76/160 (47.50%), Query Frame = 1
Query:    7 SRCLDAFSIALNQA-DSSGWYSSTLQLQLASLQFCVVCRNVSTLHLIVKDGMQCSILEDAQASDDGVKKQGHTRVPTFRPLILTWKLPTSLLSQFTSGALANLKELIIGDGFADN--AIV---------------------GVVWPASLQQLTFGSSFNQ 414
            S CL   ++ALN+  D   WY+ST +LQLASL+ C+ CR+  TLHL V       +L  A A     K+   TRVP  R    TW +PT+   + +  A  ++  L  G  F  +  AIV                     GV WPASL+++  G  FNQ
Sbjct:  134 SSCLKTLTVALNETCDGKSWYTSTKELQLASLELCMACRHYQTLHLTVDAHTPRRLLAAADAPSPHPKRLCGTRVPRLRARRATWNVPTASGMRTSIFATMDVDYLEFGQAFHGSLDAIVWPRRLKTIEFRQSSPLNRLLDGVSWPASLRKVCLGHDFNQ 293          
BLAST of mRNA_D-herbacea_F_contig1134.1045.1 vs. uniprot
Match: A0A6H5JUA5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUA5_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 2.310e-14
Identity = 57/166 (34.34%), Postives = 78/166 (46.99%), Query Frame = 1
Query:   13 CLDAFSIALNQ-ADSSGWYSSTLQLQLASLQFCVVCRNVSTLHLIVKDGMQCSILEDAQASDDGVKKQGHTRVPTFRPLILTWKLPT------SLLSQFTSGALANLK---------------ELIIGDGFA-----------DNAIVGVVWPASLQQLTFGSSFN 411
            CL+A  +ALN+ +D   WY+ST + QLASL+FC+ CRN  TL L V       +L  A A     K+   TRVP  R   +TW +PT      S+ S   + +L  ++               + +   G A           D  I GVVWP +L+QLTFG   N
Sbjct:   12 CLNAIIVALNETSDGKSWYTSTKERQLASLEFCIACRNHQTLDLKVDSRTPRRLLAAADAPPPHPKRLCGTRVPRLRARRVTWDIPTAAGLRNSIYSMMDADSLEFVRAFEDSLEAVAWPRRLKTVEVSGIAEVAKFHDKSLFDQPIAGVVWPDTLEQLTFGLFLN 177          
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig1134.1045.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
D7FT95_ECTSI4.640e-2441.13Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JA08_9PHAE7.090e-2239.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FXS2_ECTSI2.490e-2141.13Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JRF9_9PHAE1.500e-1936.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K4H1_9PHAE8.270e-1741.01Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZZ4_9PHAE5.740e-1637.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KMU8_9PHAE1.480e-1540.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JG83_9PHAE3.130e-1536.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KPY7_9PHAE1.630e-1435.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUA5_9PHAE2.310e-1434.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig1134contigD-herbacea_F_contig1134:63822..64628 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size546
Cds size546
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927536.945395-CDS-D-herbacea_F_contig1134:63821..640191622927536.945395-CDS-D-herbacea_F_contig1134:63821..64019Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1134 63822..64019 -
1690790221.8252661-CDS-D-herbacea_F_contig1134:63821..640191690790221.8252661-CDS-D-herbacea_F_contig1134:63821..64019Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1134 63822..64019 -
1622927536.9559476-CDS-D-herbacea_F_contig1134:64280..646281622927536.9559476-CDS-D-herbacea_F_contig1134:64280..64628Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1134 64281..64628 -
1690790221.8331735-CDS-D-herbacea_F_contig1134:64280..646281690790221.8331735-CDS-D-herbacea_F_contig1134:64280..64628Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1134 64281..64628 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig1134.1045.1prot_D-herbacea_F_contig1134.1045.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig1134 63822..64628 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig1134.1045.1

>prot_D-herbacea_F_contig1134.1045.1 ID=prot_D-herbacea_F_contig1134.1045.1|Name=mRNA_D-herbacea_F_contig1134.1045.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=182bp
GSSRCLDAFSIALNQADSSGWYSSTLQLQLASLQFCVVCRNVSTLHLIVK
DGMQCSILEDAQASDDGVKKQGHTRVPTFRPLILTWKLPTSLLSQFTSGA
LANLKELIIGDGFADNAIVGVVWPASLQQLTFGSSFNQAINGAAWPALVQ
QLTFGREFNQAIDAVVWPVSLRQLTFGGFFQP
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mRNA from alignment at D-herbacea_F_contig1134:63822..64628-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig1134.1045.1 ID=mRNA_D-herbacea_F_contig1134.1045.1|Name=mRNA_D-herbacea_F_contig1134.1045.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=807bp|location=Sequence derived from alignment at D-herbacea_F_contig1134:63822..64628- (Desmarestia herbacea DmunF female)
GGTTCTAGTCGGTGTCTCGATGCCTTCTCCATCGCCCTCAATCAGGCCGA TAGCAGCGGGTGGTATTCATCGACGTTGCAACTCCAGCTGGCTTCGCTGC AATTCTGCGTGGTGTGCCGAAACGTTTCCACGTTACACTTGATCGTGAAA GATGGCATGCAGTGCTCGATACTGGAGGATGCTCAAGCGTCTGATGACGG GGTCAAAAAGCAGGGCCATACGCGTGTTCCAACCTTTCGGCCCCTCATAT TGACGTGGAAGCTTCCGACGTCACTACTAAGCCAATTTACGAGCGGGGCC TTGGCGAATCTCAAGGAGCTTATAATCGGTGACGGCTTCGCCGACAACGT TAACAATTTTGCATGGCCATCGTCGCTCCGCCGACTCACGTTTGGGAGTG GTTTCAACTAAGCGATCAACAGAATCGTGTGGCCGGCGTCGATTGAGCAG CTCACGTTTGGATATTCTTTTGACCAGGCGATCGTCGGTGTCGTGTGGCC AGCGTCGCTTCAGCAACTCATATTCGGACGTAGTTTCAATCAGGCGATCG ATGGTGTCGTGTGGCCGGCGTTGATTCAGCAGCTCACGTTTGGGGATTGT TTCAACCAGGCGATCGTCGGTGTCGTGTGGCCAGCGTCGCTTCAGCAACT CACATTTGGAAGTAGTTTTAATCAGGCGATCAATGGTGCGGCGTGGCCGG CTTTGGTTCAGCAGCTCACGTTCGGGCGTGAGTTTAATCAGGCGATTGAC GCAGTCGTGTGGCCGGTGTCGCTTCGGCAGCTCACATTCGGGGGTTTTTT TCAACCA
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Coding sequence (CDS) from alignment at D-herbacea_F_contig1134:63822..64628-

>mRNA_D-herbacea_F_contig1134.1045.1 ID=mRNA_D-herbacea_F_contig1134.1045.1|Name=mRNA_D-herbacea_F_contig1134.1045.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=1092bp|location=Sequence derived from alignment at D-herbacea_F_contig1134:63822..64628- (Desmarestia herbacea DmunF female)
GGTTCTAGTCGGTGTCTCGATGCCTTCTCCATCGCCCTCAATCAGGCCGA
TAGCAGCGGGTGGTATTCATCGACGTTGCAACTCCAGCTGGCTTCGCTGC
AATTCTGCGTGGTGTGCCGAAACGTTTCCACGTTACACTTGATCGTGAAA
GATGGCATGCAGTGCTCGATACTGGAGGATGCTCAAGCGTCTGATGACGG
GGTCAAAAAGCAGGGCCATACGCGTGTTCCAACCTTTCGGCCCCTCATAT
TGACGTGGAAGCTTCCGACGTCACTACTAAGCCAATTTACGAGCGGGGCC
TTGGCGAATCTCAAGGAGCTTATAATCGGTGACGGCTTCGCCGACAACGG
TTCTAGTCGGTGTCTCGATGCCTTCTCCATCGCCCTCAATCAGGCCGATA
GCAGCGGGTGGTATTCATCGACGTTGCAACTCCAGCTGGCTTCGCTGCAA
TTCTGCGTGGTGTGCCGAAACGTTTCCACGTTACACTTGATCGTGAAAGA
TGGCATGCAGTGCTCGATACTGGAGGATGCTCAAGCGTCTGATGACGGGG
TCAAAAAGCAGGGCCATACGCGTGTTCCAACCTTTCGGCCCCTCATATTG
ACGTGGAAGCTTCCGACGTCACTACTAAGCCAATTTACGAGCGGGGCCTT
GGCGAATCTCAAGGAGCTTATAATCGGTGACGGCTTCGCCGACAACGCGA
TCGTCGGTGTCGTGTGGCCAGCGTCGCTTCAGCAACTCACATTTGGAAGT
AGTTTTAATCAGGCGATCAATGGTGCGGCGTGGCCGGCTTTGGTTCAGCA
GCTCACGTTCGGGCGTGAGTTTAATCAGGCGATTGACGCAGTCGTGTGGC
CGGTGTCGCTTCGGCAGCTCACATTCGGGGGTTTTTTTCAACCAGCGATC
GTCGGTGTCGTGTGGCCAGCGTCGCTTCAGCAACTCACATTTGGAAGTAG
TTTTAATCAGGCGATCAATGGTGCGGCGTGGCCGGCTTTGGTTCAGCAGC
TCACGTTCGGGCGTGAGTTTAATCAGGCGATTGACGCAGTCGTGTGGCCG
GTGTCGCTTCGGCAGCTCACATTCGGGGGTTTTTTTCAACCA
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