mRNA_D-herbacea_F_contig1134.1045.1 (mRNA) Desmarestia herbacea DmunF female
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Overview
Homology
BLAST of mRNA_D-herbacea_F_contig1134.1045.1 vs. uniprot
Match: D7FT95_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT95_ECTSI) HSP 1 Score: 104 bits (260), Expect = 4.640e-24 Identity = 58/141 (41.13%), Postives = 77/141 (54.61%), Query Frame = 1
Query: 1 GSSRCLDAFSIALNQADSSGWYSSTLQLQLASLQFCVVCRNVSTLHLIVKDGMQCSILEDAQASDD--GVKKQGHTRVPTFRPLILTWKLPTSLLSQFTSGALANLKELIIGDGFADNAIVGVVWPASLQQLTFGSSFNQA 417
G SRCLDA IALNQA WY+ST+QLQLASL+ C CR++ L L V+ G + + + VK++ TRVP R +TWKLP L T A + + +G GF D+ G+ WP L L G FN++
Sbjct: 8 GPSRCLDALIIALNQASGGEWYTSTMQLQLASLELCASCRSMHLLKLNVQHGTPTRLWRGTATTRETRSVKRRNVTRVPVVRARTVTWKLPGLALRNMTGDAWSEVTTFSLGPGFDDDLPRGIQWPEKLTLLGLGPGFNRS 148
BLAST of mRNA_D-herbacea_F_contig1134.1045.1 vs. uniprot
Match: A0A6H5JA08_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA08_9PHAE) HSP 1 Score: 101 bits (251), Expect = 7.090e-22 Identity = 56/141 (39.72%), Postives = 75/141 (53.19%), Query Frame = 1
Query: 1 GSSRCLDAFSIALNQADSSGWYSSTLQLQLASLQFCVVCRNVSTLHLIVKDGMQCSILEDAQASDD--GVKKQGHTRVPTFRPLILTWKLPTSLLSQFTSGALANLKELIIGDGFADNAIVGVVWPASLQQLTFGSSFNQA 417
G SRCLDA IALNQA WY+ST+QLQL SL+ C CR++ L L V+ G + + + VK++ TRVP R +TWKLP L T A + + +G GF D+ G+ WP L G FN++
Sbjct: 39 GPSRCLDALIIALNQASGGEWYTSTMQLQLTSLELCAACRSMHLLKLNVQHGTPPRLWRGTATTRETRSVKRRNVTRVPVVRARTVTWKLPGVALRNMTGDAWSEVTTFSLGPGFDDDLPRGIQWPEKLTLFGVGPGFNRS 179
BLAST of mRNA_D-herbacea_F_contig1134.1045.1 vs. uniprot
Match: D7FXS2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXS2_ECTSI) HSP 1 Score: 95.9 bits (237), Expect = 2.490e-21 Identity = 58/141 (41.13%), Postives = 81/141 (57.45%), Query Frame = 1
Query: 1 GSSRCLDAFSIALNQA-DSSGWYSSTLQLQLASLQFCVVCRNVSTLHLIVKDGMQCSILEDAQASDD---GVKKQGHTRVPTFRPLILTWKLPTSLLSQFTSGALANLKELIIGDGFADNAIVGVVWPASLQQLTFGSSFN 411
G RCL+AF++ALN + D + WY+ST +LQLASLQFCV CR V +LHL V + + L + A+ + G K+ T VP FRP +TW P LLS A ++ ++ D + VVWP L++L FG F+
Sbjct: 3 GPGRCLEAFAVALNTSCDGNVWYTSTKELQLASLQFCVKCRKVPSLHLAVNNAHVPARLWNDHAATEARTGAKRPSTTPVPVFRPREVTWGRPAWLLSDICL-VFAKVERFLVRQ---DTVVDDVVWPCRLKKLFFGEGFD 139
BLAST of mRNA_D-herbacea_F_contig1134.1045.1 vs. uniprot
Match: A0A6H5JRF9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRF9_9PHAE) HSP 1 Score: 94.7 bits (234), Expect = 1.500e-19 Identity = 57/158 (36.08%), Postives = 78/158 (49.37%), Query Frame = 1
Query: 13 CLDAFSIALNQA-DSSGWYSSTLQLQLASLQFCVVCRNVSTLHLIVKDGMQCSILEDAQASDDGVKKQGHTRVPTFRPLILTWKLPTSLLSQFTSGALANLKELIIGDGFADN-----------------------AIVGVVWPASLQQLTFGSSFNQ 414
CL+A +ALN+ D WY+ST +LQLASL FC+ CRN T+HL V + + +L A A K+ TRVP R +TW +PT+ + A+ +++ L GD F D+ I V WP LQ +TFG FNQ
Sbjct: 51 CLEALIVALNETCDGKSWYTSTKELQLASLDFCIACRNCQTVHLNVDEQIPRRLLASADAPPPHPKRLCWTRVPRLRSRRVTWNMPTAAKLRTPIFAMTDMEYLEFGDAFGDSLEAVPWPEHLRTMEFHHDSPFDQTIELVQWPPFLQNVTFGGDFNQ 208
BLAST of mRNA_D-herbacea_F_contig1134.1045.1 vs. uniprot
Match: A0A6H5K4H1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4H1_9PHAE) HSP 1 Score: 86.7 bits (213), Expect = 8.270e-17 Identity = 57/139 (41.01%), Postives = 75/139 (53.96%), Query Frame = 1
Query: 4 SSRCLDAFSIALNQA--DSSGWYSSTLQLQLASLQFCVVCRNVSTLHLIVKDGMQCSILED-----AQASDDGVKKQGHTRVPTFRPLILTWKLPTSLLSQFTSGALANLKELIIGDGFADNAIVGVVWPASLQQLTFG 399
SSRCL+AF +AL Q D WY ST QLQLASL FC+ CR+ TL L V D + +L D A + G + G +RVP F +TW + + + ALA + I+ GF + AI V WP L++L FG
Sbjct: 27 SSRCLEAFRVALQQTCLDRESWYVSTTQLQLASLPFCLACRDSVTLCLTVDDSIPRRLLADVGGNEAVVAPAGPCQCGRSRVPRFHAREVTWHRQSCVELSASIYALAEVDFFILDGGF-NRAIGAVAWPRKLRRLEFG 164
BLAST of mRNA_D-herbacea_F_contig1134.1045.1 vs. uniprot
Match: A0A6H5JZZ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZZ4_9PHAE) HSP 1 Score: 85.1 bits (209), Expect = 5.740e-16 Identity = 49/132 (37.12%), Postives = 70/132 (53.03%), Query Frame = 1
Query: 4 SSRCLDAFSIALNQA-DSSGWYSSTLQLQLASLQFCVVCRNVSTLHLIVKDGMQCSILEDAQASDDGVKKQGHTRVPTFRPLILTWKLPTSLLSQFTSGALANLKELIIGDGFADNAIVGVVWPASLQQLTF 396
S+ CL+A +AL + D WY+ST +LQLASL+FC+ CR TLHLIV + +L A K+ RVP R +TW +PT+ + AL +L L G F + ++ V WP L+ + F
Sbjct: 33 SNTCLNAIYVALGETRDGKSWYTSTKELQLASLEFCMACRAYQTLHLIVDVRIPRMLLAAADGPPQHPKRLSRRRVPRLRARHVTWNMPTAAELRSPIFALMDLDHLDFGSAF-EGSLEAVTWPRRLESIAF 163
BLAST of mRNA_D-herbacea_F_contig1134.1045.1 vs. uniprot
Match: A0A6H5KMU8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMU8_9PHAE) HSP 1 Score: 82.8 bits (203), Expect = 1.480e-15 Identity = 52/127 (40.94%), Postives = 70/127 (55.12%), Query Frame = 1
Query: 19 DAFSIALNQADS-SGWYSSTLQLQLASLQFCVVCRNVSTLHLIVKDGMQCSILED--AQASDDGVKKQGHTRVPTFRPLILTWKLPTSLLSQFTSGALANLKELIIGDGFADNAIVGVVWPASLQQL 390
DA IALNQ +GWY+S LQLQLASLQ C+ CR V T HL V+ + + A+A+ + G +RVP RP +TW L T L + A ++ L+ GD F D + V WP L++L
Sbjct: 17 DALDIALNQVSGVNGWYTSKLQLQLASLQLCLACRRVPTSHLTVERDVLALLWPHSAAEATRSRLVSLGQSRVPALRPRKVTWNLAT-LSMRHCGDAFESVDVLVFGDSF-DYRVDRVTWPPGLKKL 141
BLAST of mRNA_D-herbacea_F_contig1134.1045.1 vs. uniprot
Match: A0A6H5JG83_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG83_9PHAE) HSP 1 Score: 82.8 bits (203), Expect = 3.130e-15 Identity = 50/136 (36.76%), Postives = 71/136 (52.21%), Query Frame = 1
Query: 31 IALNQA-DSSGWYSSTLQLQLASLQFCVVCRNVSTLHLIVKDGMQCSILEDAQASDDGVKKQGH----------TRVPTFRPLILTWKLPTSLLSQFTSGALANLKELIIGDGF--ADNAIVGVVWPASLQQLTFG 399
+ALN+ WY ST+QLQLAS++FCV CR+VSTLHL V++G + D + RVP FRP +TW LP S+LS+ + A NL+ + D + ++ GV P L+ + FG
Sbjct: 2 VALNETYGGKQWYISTVQLQLASVEFCVACRSVSTLHLTVEEGTPRHLWADTWSDQSDXXXXXXXXXXXGRSVLVRVPPFRPREVTWNLPPSMLSEASKDAFKNLECMSFSDAVERSGDSFDGVALPRGLKSVVFG 137
BLAST of mRNA_D-herbacea_F_contig1134.1045.1 vs. uniprot
Match: A0A6H5KPY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPY7_9PHAE) HSP 1 Score: 80.9 bits (198), Expect = 1.630e-14 Identity = 56/160 (35.00%), Postives = 76/160 (47.50%), Query Frame = 1
Query: 7 SRCLDAFSIALNQA-DSSGWYSSTLQLQLASLQFCVVCRNVSTLHLIVKDGMQCSILEDAQASDDGVKKQGHTRVPTFRPLILTWKLPTSLLSQFTSGALANLKELIIGDGFADN--AIV---------------------GVVWPASLQQLTFGSSFNQ 414
S CL ++ALN+ D WY+ST +LQLASL+ C+ CR+ TLHL V +L A A K+ TRVP R TW +PT+ + + A ++ L G F + AIV GV WPASL+++ G FNQ
Sbjct: 134 SSCLKTLTVALNETCDGKSWYTSTKELQLASLELCMACRHYQTLHLTVDAHTPRRLLAAADAPSPHPKRLCGTRVPRLRARRATWNVPTASGMRTSIFATMDVDYLEFGQAFHGSLDAIVWPRRLKTIEFRQSSPLNRLLDGVSWPASLRKVCLGHDFNQ 293
BLAST of mRNA_D-herbacea_F_contig1134.1045.1 vs. uniprot
Match: A0A6H5JUA5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUA5_9PHAE) HSP 1 Score: 79.7 bits (195), Expect = 2.310e-14 Identity = 57/166 (34.34%), Postives = 78/166 (46.99%), Query Frame = 1
Query: 13 CLDAFSIALNQ-ADSSGWYSSTLQLQLASLQFCVVCRNVSTLHLIVKDGMQCSILEDAQASDDGVKKQGHTRVPTFRPLILTWKLPT------SLLSQFTSGALANLK---------------ELIIGDGFA-----------DNAIVGVVWPASLQQLTFGSSFN 411
CL+A +ALN+ +D WY+ST + QLASL+FC+ CRN TL L V +L A A K+ TRVP R +TW +PT S+ S + +L ++ + + G A D I GVVWP +L+QLTFG N
Sbjct: 12 CLNAIIVALNETSDGKSWYTSTKERQLASLEFCIACRNHQTLDLKVDSRTPRRLLAAADAPPPHPKRLCGTRVPRLRARRVTWDIPTAAGLRNSIYSMMDADSLEFVRAFEDSLEAVAWPRRLKTVEVSGIAEVAKFHDKSLFDQPIAGVVWPDTLEQLTFGLFLN 177 The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig1134.1045.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90) Total hits: 22
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-herbacea_F_contig1134.1045.1 >prot_D-herbacea_F_contig1134.1045.1 ID=prot_D-herbacea_F_contig1134.1045.1|Name=mRNA_D-herbacea_F_contig1134.1045.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=182bp GSSRCLDAFSIALNQADSSGWYSSTLQLQLASLQFCVVCRNVSTLHLIVKback to top mRNA from alignment at D-herbacea_F_contig1134:63822..64628- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-herbacea_F_contig1134.1045.1 ID=mRNA_D-herbacea_F_contig1134.1045.1|Name=mRNA_D-herbacea_F_contig1134.1045.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=807bp|location=Sequence derived from alignment at D-herbacea_F_contig1134:63822..64628- (Desmarestia herbacea DmunF female)back to top Coding sequence (CDS) from alignment at D-herbacea_F_contig1134:63822..64628- >mRNA_D-herbacea_F_contig1134.1045.1 ID=mRNA_D-herbacea_F_contig1134.1045.1|Name=mRNA_D-herbacea_F_contig1134.1045.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=1092bp|location=Sequence derived from alignment at D-herbacea_F_contig1134:63822..64628- (Desmarestia herbacea DmunF female)back to top |