mRNA_D-herbacea_F_contig113.1042.1 (mRNA) Desmarestia herbacea DmunF female
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Overview
Homology
BLAST of mRNA_D-herbacea_F_contig113.1042.1 vs. uniprot
Match: D7FTQ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTQ4_ECTSI) HSP 1 Score: 467 bits (1201), Expect = 5.690e-151 Identity = 270/603 (44.78%), Postives = 347/603 (57.55%), Query Frame = 3
Query: 282 GRLQGTAPASASYAGGASEADVNPTFDDLDPVVTAAILTQAAFRGYRLRERLRGLPAREAERAIRGLHRNTMGFRRLALFLAFFGLYFALVFSMLDVSFQRSVEQGLRDHVALVKYGPENDRTHNDVSSMADLHQWMQAFYLRTYSGTQLEHRCSPCIVKQQVTEEICDACDFSDYDAEVGAATGDNRRXXXXXXXXXXXXXTNVFGLSELCRRCLVARRCEGIYLENCIDFLVSSSEDNGVSDGDTGTTSAESDWALSPNVSAALAEIDLEPQGGVSALAGYLAVSNVSNCTSFIEDFGRTENMHRFDLSLEVPYNGIGYLAERNRIIGGMLVTFTRRSLLSLEECKSSR--DYYDVCLSED-QDKDTIEINGTLTNFRPDQNVVYNSEAGGFPILIDTGGFNTGLNFGYCTLLTMEEVNLIPRDEVKSVSVQVVTYNGNEKSTYGSIWIDFDFEDGGEVLVDEEFTAYLLQG-VGDSNATLQWFGGLVFSVVFIGMARHDTRKWYRTRHSKVKRNRCHCLCGLTFHVLVFTNILMWLAWGFLGSSVTFVTEFQNVEGSSQ-VLDSLTNEVVTLHQIALLADFTTFLFLLTTMAGLYRWIFQ 2075
GRL +P S G S++DV PTFD+LDP VTAAIL QAAFRGYRLRERLR LPAREAE+ I GLH N GFRR+ LFL F GLYF LVF +DV+FQRSV+Q LRDHVA VKYGP+ D+TH+DV+S+ D+H W+Q +A C G++LE C + L S + T ++S + A++ N SA L E+DLEP GGV A GY+ V NV+ Y+G GY +RNR IGGMLVTFTRR+ LS +EC SS DYYD+CL+++ +K T +FR + +VY+ A G+P+LI+TGGFN GLNFGYCTLL ME++++IPRDEV+SV+VQ+VTYNGN+ S +GSI I F F+ GGEV E TAY+L G G N ++W GL+F + + M RHDT+KWYR RH+K +RN+CHC CG TF L+ N+LMWL W LG + F Q V+ +LT +++ L + AL + +FLLTT+AGLYRWIFQ
Sbjct: 33 GRLSAKSP-HGSNGGTDSDSDVAPTFDNLDPSVTAAILAQAAFRGYRLRERLRRLPAREAEKHILGLHNNARGFRRVGLFLLFSGLYFTLVFYGVDVAFQRSVQQALRDHVAGVKYGPDLDKTHHDVASLGDVHDWIQ------------------------------------------------------------------------------IALNCIGVFLEKCEEVLGLPSSNT------TASSSTATSEAVAANFSALLEELDLEPSGGVRASGGYVTVENVN-------------------------YDGNGYAGDRNRAIGGMLVTFTRRNRLSSDECSSSSSGDYYDICLADEGTNKTTYSPPQPWASFRQSEEMVYSGVASGYPVLIETGGFNIGLNFGYCTLLVMEDLDVIPRDEVRSVNVQLVTYNGNQGSAFGSINIGFTFDHGGEVEAHELVTAYILTGNAGQGNDRIRWILGLIFVCMTLAMIRHDTKKWYRARHAKARRNKCHCCCGFTFFTLIILNVLMWLGWASLGKVIAFDVVLQGTSSEEDSVMAALTGQILALQEAALFSWSLHIIFLLTTLAGLYRWIFQ 525
BLAST of mRNA_D-herbacea_F_contig113.1042.1 vs. uniprot
Match: A0A6H5L574_9PHAE (PKD_channel domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L574_9PHAE) HSP 1 Score: 376 bits (965), Expect = 2.100e-119 Identity = 202/302 (66.89%), Postives = 236/302 (78.15%), Query Frame = 3
Query: 2076 MLTFHKRMSIVTDTLSGASTHLDHFLFVFFLVMMVFANITWLLVGSTAEEFSTLPDSWRSVLRVSLGESENFYPQILEAQPTVGPVMVVMYQVLGVVLLLNVVIAVILEAYREVVGGMRGEDTIFQSLTAFVGMTLCMWAVRLRWTCSYVRWRLSGRRNEAGGRPSLKVALQGSTGVCGVDGRPVLMIRRPAHKVSMTAERQLSFNCPRYISVTEMQALIEATPVPSFVADRIVRKIVHEWVFHSDEKRTGTSAPGMFSGGASFSGGYGRSGSESIEPL----------PMLRRPDAPSTSR 2951
MLTFHKRMSIVTDTLS ASTHL+HFLFVFFLV++ FA +TWLLVGS+ +EFSTL D+WRSV+R+SLGESENFYPQIL+AQPTVGPV+VV+YQVLGVVLLLNVVIA++LEAYR V GM GEDTIFQS AFVGM+ C R+RW + +RWRL GRRN + RPSLK+ LQGSTGVCGVDGRPV+M+RRP ++ RQLSFNCPRYI+VTEMQALIEATPVP+ VADR+VRKIVH+WVF SDE+ TG S S G +G G +G + L PM RRP + + SR
Sbjct: 1 MLTFHKRMSIVTDTLSRASTHLNHFLFVFFLVILAFAALTWLLVGSSTKEFSTLEDAWRSVIRISLGESENFYPQILDAQPTVGPVVVVLYQVLGVVLLLNVVIAILLEAYRGVASGMHGEDTIFQSFIAFVGMSWCSLTTRIRWATACIRWRLGGRRNTS--RPSLKIFLQGSTGVCGVDGRPVVMVRRPPESSTILG-RQLSFNCPRYITVTEMQALIEATPVPARVADRLVRKIVHDWVFRSDERITGGSFQSPSSSGEYGNGTGGGNGGVTATNLRRTSSTDSSRPMQRRPSSSTASR 299
BLAST of mRNA_D-herbacea_F_contig113.1042.1 vs. uniprot
Match: D7FTQ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTQ5_ECTSI) HSP 1 Score: 270 bits (691), Expect = 3.610e-78 Identity = 178/368 (48.37%), Postives = 218/368 (59.24%), Query Frame = 3
Query: 261 IDDTRERGRLQGTAPA--SASYAGGASEADVNPTFDDLDPVVTAAILTQAAFRGYRLRERLRGLPAREAERAIRGLHRNTMGFRRLALFLAFFGLYFALVFSMLDVSFQRSVEQGLRDHVALVKYGPENDRTHNDVSSMADLHQWMQAFYLRTYSGTQLEHRCSPCIVKQQVTEEICDACDFS--------DYDAEVG---------------AATGDNRRXXXXXXXXXXXXX---TNVFGLSELCRRCLVARRCEGIYLENCIDFLVSSSEDNGVSDGDTGTTSAESDWALSPNVSAALAEIDLEPQGGVSALAGYLAVSNVSNCTSFIEDFGRTENMHRFDLSLEVPYNGIGYLAERNRIIGGML 1280
+ + GRL AP S+S +G S++DV PTFD LDP VTAAIL QAAFRGYRLRERLR LPAREAE+ I GL+ N GFRR+ LFL F GLYFALVF +DVSFQRSV+Q LRDHVA VKYGP+ D+TH+DV+S+AD+HQW+QAF+L+TY GTQLEH C+PC +K +++CDACDF+ D D+ AA + RR XXXXXXXXXX + FG+SE C +CL+A C G L+NC + L + T N S L E+DLEP GGV A GY+ V NV Y+G GY+ +RNR IGGML
Sbjct: 26 LQTSSNSGRLSAQAPHGDSSSNSGIDSDSDVAPTFDKLDPSVTAAILAQAAFRGYRLRERLRRLPAREAEKHILGLYNNARGFRRVGLFLLFSGLYFALVFYGVDVSFQRSVQQALRDHVAGVKYGPDLDKTHHDVASLADVHQWVQAFFLKTYDGTQLEHPCTPCAIKPP--DDVCDACDFTPLYEMFANDSDSSAADNVGSQGEPSPGDGVAAAWNGRRKVAXXXXXXXXXXXXXSTSFGISEECVQCLIALNCVGDLLQNCQEVLGLPYSNT------TAXXXXXXXXXXXANFSTLLEELDLEPSGGVRASGGYVTVENVD-------------------------YSGNGYVGDRNRAIGGML 360
BLAST of mRNA_D-herbacea_F_contig113.1042.1 vs. uniprot
Match: A0A6H5L8A4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8A4_9PHAE) HSP 1 Score: 223 bits (568), Expect = 8.780e-63 Identity = 109/157 (69.43%), Postives = 132/157 (84.08%), Query Frame = 3
Query: 333 SEADVNPTFDDLDPVVTAAILTQAAFRGYRLRERLRGLPAREAERAIRGLHRNTMGFRRLALFLAFFGLYFALVFSMLDVSFQRSVEQGLRDHVALVKYGPENDRTHNDVSSMADLHQWMQAFYLRTYSGTQLEHRCSPCIVKQQVTEEICDACDFS 803
S++DV PT+D LDP VTAAIL QAAFRGYRLRERLR LPAREAE+ I GLH N GFRR+ LFL F GLYFALVF +DV+FQRSV+Q LRDHVA VKYGP+ D+TH+DV+S+AD+HQW+QAF+L+TY GTQLEH C+PC +K +++CDACDF+
Sbjct: 9 SDSDVAPTYDKLDPSVTAAILAQAAFRGYRLRERLRRLPAREAEKQILGLHSNARGFRRVGLFLLFSGLYFALVFYGVDVAFQRSVQQALRDHVAGVKYGPDLDKTHHDVASLADVHQWVQAFFLKTYDGTQLEHPCTPCAIKPP--DDVCDACDFT 163
BLAST of mRNA_D-herbacea_F_contig113.1042.1 vs. uniprot
Match: D7FTQ7_ECTSI (Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTQ7_ECTSI) HSP 1 Score: 213 bits (542), Expect = 8.880e-61 Identity = 113/144 (78.47%), Postives = 125/144 (86.81%), Query Frame = 3
Query: 2076 MLTFHKRMSIVTDTLSGASTHLDHFLFVFFLVMMVFANITWLLVGSTAEEFSTLPDSWRSVLRVSLGESENFYPQILEAQPTVGPVMVVMYQVLGVVLLLNVVIAVILEAYREVVGGMRGEDTIFQSLTAFVGMTLCMWAVRLR 2507
MLTFHKRMSIVTDTLS ASTHLDHFLFVFFLV++ FA +TWLLVGS+ +EFSTL ++W SV R+SLGESENFYPQIL+AQPTVGPV VV+YQVLGVVLLLNVVIA+ LEAYR VV GMRGEDTIFQS AFVGM+ W LR
Sbjct: 1 MLTFHKRMSIVTDTLSRASTHLDHFLFVFFLVILAFAALTWLLVGSSTKEFSTLVEAWGSVTRISLGESENFYPQILDAQPTVGPVAVVLYQVLGVVLLLNVVIAIFLEAYRGVVSGMRGEDTIFQSFIAFVGMS--WWVPHLR 142
BLAST of mRNA_D-herbacea_F_contig113.1042.1 vs. uniprot
Match: D7FTQ6_ECTSI (Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTQ6_ECTSI) HSP 1 Score: 177 bits (448), Expect = 1.310e-47 Identity = 90/111 (81.08%), Postives = 104/111 (93.69%), Query Frame = 3
Query: 2076 MLTFHKRMSIVTDTLSGASTHLDHFLFVFFLVMMVFANITWLLVGSTAEEFSTLPDSWRSVLRVSLGESENFYPQILEAQPTVGPVMVVMYQVLGVVLLLNVVIAVILEAY 2408
MLTFHKRMSIVTDTLS ASTHLDHFLFVFFLV++ FA +TWLLVGS+ +EFSTL D+W+SV R+SLGESENFYPQIL+AQPTVGPV+VV+YQVLGVVLLLNVVIA++LE +
Sbjct: 32 MLTFHKRMSIVTDTLSRASTHLDHFLFVFFLVILAFAALTWLLVGSSTKEFSTLEDAWQSVTRISLGESENFYPQILDAQPTVGPVVVVLYQVLGVVLLLNVVIAILLETF 142
BLAST of mRNA_D-herbacea_F_contig113.1042.1 vs. uniprot
Match: A0A6H5KUB6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUB6_9PHAE) HSP 1 Score: 177 bits (448), Expect = 2.470e-47 Identity = 97/144 (67.36%), Postives = 109/144 (75.69%), Query Frame = 3
Query: 270 TRERGRLQGTAP--ASASYAGGASEADVNPTFDDLDPVVTAAILTQAAFRGYRLRERLRGLPAREAERAIRGLHRNTMGFRRLALFLAFFGLYFALVFSMLDVSFQRSVEQGLRDHVALVKYGPENDRTHNDVSSMADLHQWMQ 695
T GRL AP S+S DV PTFD LDP VTAAIL QAAFRGYRLRERLR LPAREAE+ I GLH N GFRR+ LFL F GLYFALVF +DVSFQRSV+Q LRDHVA VKYGP+ D+TH+DV+S+AD+HQW+Q
Sbjct: 30 TSTGGRLSAQAPHGGSSSNXXXXXXXDVAPTFDKLDPSVTAAILAQAAFRGYRLRERLRRLPAREAEKHILGLHNNARGFRRVGLFLLFSGLYFALVFYGVDVSFQRSVQQALRDHVAGVKYGPDLDKTHHDVASLADVHQWVQ 173
BLAST of mRNA_D-herbacea_F_contig113.1042.1 vs. uniprot
Match: A0A6H5JES1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JES1_9PHAE) HSP 1 Score: 138 bits (348), Expect = 2.120e-33 Identity = 95/220 (43.18%), Postives = 119/220 (54.09%), Query Frame = 3
Query: 2394 ILEAYREVVGGMRGEDTIFQSLTAFVGMTL--------------------CMWAVRLRWTCSYVRWRLSGRRN----EAGGRPSLKVALQGSTGVCGVDGRPVLMIRRPAHKVSMTAERQLSFNCPRYISVTEMQALIEATPVPSFVADRIVRKIVHEWVFHSDEKRTGTSAPGMFSGGASFSGGYGRSGSESI----------EPLPMLRRPDAPSTSR 2951
+++AYR VV GMRGEDTI S AFVGM+ C+ +RW +Y+RWRL+GRRN + RPSL++ LQGSTGVCGVDGRPV+M+R ++ RQL ALIEA PVP+ VA R+VRKIVHEWVF SDE+ TG + S G SG G +G ++ PMLRR + S SR
Sbjct: 11 VVKAYRGVVSGMRGEDTILPSFIAFVGMSWWVLHSRQTARQPEQILTSVSCVLKTGIRWATAYIRWRLAGRRNTPPQDGPRRPSLRMFLQGSTGVCGVDGRPVVMVRGLPESSTILG-RQLP------------AALIEAFPVPARVAGRLVRKIVHEWVFRSDERITGGVSQSPSSSGEYGSGTGGGNGGVTVLSTRRTYCTDSSRPMLRRWSSFSPSR 217
BLAST of mRNA_D-herbacea_F_contig113.1042.1 vs. uniprot
Match: A0A6H5JIW8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIW8_9PHAE) HSP 1 Score: 129 bits (325), Expect = 5.060e-31 Identity = 75/148 (50.68%), Postives = 94/148 (63.51%), Query Frame = 3
Query: 1947 SSQVLDSLTNEVVTLHQIALLADFTTFLFLLTTMAGLYRWIFQMLTFHKRMSIVTDTLSGASTHLDHFLFVFFL--------------------------VMMVFANITWLLVGSTAEEFSTLPDSWRSVLRVSLGESENFYPQILEA 2312
+ VL +LT ++ L + L + +FLLTT+AGLY WIFQM TFHKRMSIV DTLS ASTHL FLFVFFL V++ FA +T+LLVGS+ +E STL D+WRSV+R+S GES+N YPQIL+A
Sbjct: 14 ADSVLGALTGPILALQEAELFSWSLYIIFLLTTLAGLYPWIFQMFTFHKRMSIVPDTLSRASTHLTQFLFVFFLERLTQLPDKRCLGVLVLVVVLTTPMVVVLAFAALTFLLVGSSTKEISTLEDAWRSVIRISPGESDNLYPQILDA 161
BLAST of mRNA_D-herbacea_F_contig113.1042.1 vs. uniprot
Match: D7G2W7_ECTSI (Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2W7_ECTSI) HSP 1 Score: 126 bits (317), Expect = 1.500e-26 Identity = 119/415 (28.67%), Postives = 199/415 (47.95%), Query Frame = 3
Query: 1365 QDKDTIEINGTLTNFRPDQNVVYNSEAGGFPILIDTGGFNTGLNFGYCTLLTMEEVNLIPRDEVKSVSVQVVTYNGNEKSTYGSIWIDFDFEDGGEVLVDEEFTAYLLQGV-GDSNA----TLQWFGGLVFSVVFIGMARHDTRKWYRTRHSKVKRNRCHCLCGLTFHVLVFT--------------NILMWLAWGFLGSSVTFVTEFQNVEGSSQVLDSLTNEVVTLHQIALLADFTTFLFLLTTMAGLYRWIFQMLTFHKRMSIVTDTLSGASTHLDHFLFVFFLVMMVFANITWLLVGSTAEEFSTLPDSWRSVLRVSLGESENFYPQILEAQPTVGPVMVVMYQVLGVVLLLNVVIAVILEAYREVV--GGMRGEDTIFQSLTAFVGMTLCMWAVRLRWTCSYVRWRLSGR 2546
Q K +E N + R DQ +VY+ I D G FN+GLNF C +L + + D V+SVS++ TYNG + + I F GGEV + + + G S A + F + V++IG + R W R + H L HV V T N+++W+ + + S QV + + E+ + D + ++ GL R +F ML FH R+S+VTD L+ ++ HL HF +FF+V+ V++N+ W++ G ++ F+T S+ ++ R++LGE +N YP ++E +++V YQ L +LLLN+VI+++L+A++ V + DT++Q++ TL W +RL ++V + L GR
Sbjct: 9 QSKSRLEANPSR---REDQGLVYS-------ITTDIGVFNSGLNFNLCGMLAILGGPDVMTDAVRSVSLRFNTYNGQCDGLFSFVDITALFTLGGEVKMVTSVEVFSMPFFFGSSPAIVGRAIAMFAFGLMLVIYIG--KDVLRAWREVRDGR------HRLSMSLRHVPVTTATALNLVGDCVFLWNLVLWVNVAVTAAKFELIPTLSYNNASEQVR-AFSEELALVALERWKRDAAA---VAGSIFGLTR-LFIMLRFHPRLSLVTDVLTASAVHLVHFFIMFFMVVGVYSNLVWVIFGPSSLLFATWTKSFVTMTRIALGEFDNIYPLMVEIDGAAAFMIIVTYQTLQCILLLNIVISILLDAFQMVQKRNSVVAADTLWQTVMT----TLGRWRIRL----THVGFALVGR 392 The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig113.1042.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-herbacea_F_contig113.1042.1 >prot_D-herbacea_F_contig113.1042.1 ID=prot_D-herbacea_F_contig113.1042.1|Name=mRNA_D-herbacea_F_contig113.1042.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=928bp MLGWFFYEEAEEETPQQQQLQQQQRGIQGGIDDTRERGRLQGTAPASASYback to top mRNA from alignment at D-herbacea_F_contig113:796153..849524+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-herbacea_F_contig113.1042.1 ID=mRNA_D-herbacea_F_contig113.1042.1|Name=mRNA_D-herbacea_F_contig113.1042.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=53372bp|location=Sequence derived from alignment at D-herbacea_F_contig113:796153..849524+ (Desmarestia herbacea DmunF female)back to top Coding sequence (CDS) from alignment at D-herbacea_F_contig113:796153..849524+ >mRNA_D-herbacea_F_contig113.1042.1 ID=mRNA_D-herbacea_F_contig113.1042.1|Name=mRNA_D-herbacea_F_contig113.1042.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=5568bp|location=Sequence derived from alignment at D-herbacea_F_contig113:796153..849524+ (Desmarestia herbacea DmunF female)back to top |