mRNA_D-herbacea_F_contig113.1038.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig113.1038.1
Unique NamemRNA_D-herbacea_F_contig113.1038.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig113.1038.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig113contigD-herbacea_F_contig113:699572..700769 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size359
Cds size357
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927530.1782587-CDS-D-herbacea_F_contig113:699571..6997011622927530.1782587-CDS-D-herbacea_F_contig113:699571..699701Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig113 699572..699701 +
1690790218.0390556-CDS-D-herbacea_F_contig113:699571..6997011690790218.0390556-CDS-D-herbacea_F_contig113:699571..699701Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig113 699572..699701 +
1622927530.1973305-CDS-D-herbacea_F_contig113:700542..7007691622927530.1973305-CDS-D-herbacea_F_contig113:700542..700769Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig113 700543..700769 +
1690790218.049729-CDS-D-herbacea_F_contig113:700542..7007691690790218.049729-CDS-D-herbacea_F_contig113:700542..700769Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig113 700543..700769 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig113.1038.1prot_D-herbacea_F_contig113.1038.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig113 699572..700769 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig113.1038.1

>prot_D-herbacea_F_contig113.1038.1 ID=prot_D-herbacea_F_contig113.1038.1|Name=mRNA_D-herbacea_F_contig113.1038.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=119bp
TRLGATSAFGVFLRRLRVSFEGANFHRLSLIYEDLLRFVHDPRGSTASHD
AASPSASDEDMMDMDLGSPSGRSSMGMEGLPGDIEIEGGVGGGGHIDAFL
RQRGLGASTPEPRARGVVE
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mRNA from alignment at D-herbacea_F_contig113:699572..700769+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig113.1038.1 ID=mRNA_D-herbacea_F_contig113.1038.1|Name=mRNA_D-herbacea_F_contig113.1038.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=1198bp|location=Sequence derived from alignment at D-herbacea_F_contig113:699572..700769+ (Desmarestia herbacea DmunF female)
ACGCGCTTGGGAGCCACCAGCGCGTTCGGAGTGTTTCTAAGACGCTTACG
GGTATCATTCGAAGGAGCCAATTTCCACCGCCTTTCCCTGATCTACGAGG
ATCTCCTGCGCTTCGTCCACGATCCGAGAGGTGTGTCCGCAACAACAACC
AAAAACGCCAGTGAAAAGTAGAATTTAAAAATGATAGTACCCACGTTTTC
CCGCCTACAGTATGATAAGTATGACGGTACAGAAACAACCGTCGGCACGG
AAAACTTGGCCAGCTTTGGAACTTGCGGCCCACAGCGTTTTTTTTGCAAT
TTTAAGAAGTTGAGCACAATCGGTGGCGCCCAATTAGAATAGATAGAACG
TTACACCATTATGTCTGGAAATATAGGGACCACTTATATATTGTTGTAAT
TACAATAATATATAAGTGGTCATGTATATAAGTGGTCTCTATATACCCGG
GCAAAGTACTTATTATTATTAATCCTCTACATTAAGCTGATGGTGACCCC
GTGGGGGAAAGTAAAACATGTATGTATCATTTGCGTGTGCCCGGAGTATG
AGGACACTGGTGAGGTGGAAAAAATTCCAGGTGTACCCATTCGGGGGGAT
ATATACCGTACACCCAGACTGTTATTATACTACTATTACTAAGCCATCGC
ACCTACGATCATGGTTGTGTATGAAGTCTGTGTTTTTATGTGACGGCGCC
TGCGCTGCGCGGTGCTAATTTTAATATCACAGGGTATGCCTACTGATTAC
CAGTGCCAAGCGGGGTCAGGCCCCCGGAAGGAAGCAGTTCGCAACAATAT
CTAGAACTAACCCTATGCCCCTAACCTTAACGACCAATCTATTAACAAGA
CGGACCGAAAACATCCACCTCCCTAAAGATCCGGTCGCTATCGGTGTGCT
CATACTGCTGGGAATTAAATATCGCATTTTCCCTTGCACGTGCCCTTACC
CCTCCCCCCCCCCTCCATAAGGTTCAACCGCATCCCATGATGCCGCGTCG
CCGAGTGCATCGGATGAAGATATGATGGATATGGACCTCGGATCGCCCTC
CGGACGGAGTTCCATGGGAATGGAAGGCCTTCCTGGTGACATAGAGATAG
AAGGAGGAGTAGGAGGGGGGGGGCATATCGATGCGTTTCTGCGTCAGCGA
GGGCTCGGGGCGTCCACCCCTGAACCAAGGGCTCGTGGGGTTGTAGAG
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Coding sequence (CDS) from alignment at D-herbacea_F_contig113:699572..700769+

>mRNA_D-herbacea_F_contig113.1038.1 ID=mRNA_D-herbacea_F_contig113.1038.1|Name=mRNA_D-herbacea_F_contig113.1038.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=714bp|location=Sequence derived from alignment at D-herbacea_F_contig113:699572..700769+ (Desmarestia herbacea DmunF female)
ACGCGCTTGGGAGCCACCAGCGCGTTCGGAGTGTTTCTAAGACGCTTACG
GGTATCATTCGAAGGAGCCAATTTCCACCGCCTTTCCCTGATCTACGAGG
ATCTCCTGCGCTTCGTCCACGATCCGAGAGACGCGCTTGGGAGCCACCAG
CGCGTTCGGAGTGTTTCTAAGACGCTTACGGGTATCATTCGAAGGAGCCA
ATTTCCACCGCCTTTCCCTGATCTACGAGGATCTCCTGCGCTTCGTCCAC
GATCCGAGAGGTTCAACCGCATCCCATGATGCCGCGTCGCCGAGTGCATC
GGATGAAGATATGATGGATATGGACCTCGGATCGCCCTCCGGACGGAGTT
CCATGGGAATGGAAGGCCTTCCTGGTGACATAGAGATAGAAGGAGGAGTA
GGAGGGGGGGGGCATATCGATGCGTTTCTGCGTCAGCGAGGGCTCGGGGC
GTCCACCCCTGAACCAAGGGCTCGTGGGGTTGTAGAGGTTCAACCGCATC
CCATGATGCCGCGTCGCCGAGTGCATCGGATGAAGATATGATGGATATGG
ACCTCGGATCGCCCTCCGGACGGAGTTCCATGGGAATGGAAGGCCTTCCT
GGTGACATAGAGATAGAAGGAGGAGTAGGAGGGGGGGGGCATATCGATGC
GTTTCTGCGTCAGCGAGGGCTCGGGGCGTCCACCCCTGAACCAAGGGCTC
GTGGGGTTGTAGAG
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