mRNA_D-herbacea_F_contig113.1031.1 (mRNA) Desmarestia herbacea DmunF female
|
Overview
Homology
BLAST of mRNA_D-herbacea_F_contig113.1031.1 vs. uniprot
Match: A0A6H5KT89_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT89_9PHAE) HSP 1 Score: 461 bits (1187), Expect = 4.720e-148 Identity = 315/614 (51.30%), Postives = 396/614 (64.50%), Query Frame = 3
Query: 120 MQRVSGVIMVLAAVHEADGFYSATGRFGG-AARCAA---SRSRQTSPWAARPGTAMVQSGRGSALSMAATSYTEYMAGRKAQEAASLESPPEEETPPSDGTPVAVVAVPATA-EPEVVDVPVSVPPQEQPSIAEQASSGEGVVGSIEEGVDADASAEGXXXXXXXXXXXXXXXXXVMESRTMQLSKRVDEEAQMATSRTRRMADLSSQLKRSFARKEEVEMMIADEIGLLSLKLKQERDIEMVREEELKQLLIEFRETIAEXXXXXXXXXXXXXXXXA--LREQVQEPSIRAPVEAAMAKKADVTSIEVMLLEDLVECKEQLEDELQSTSSRADTMSGVVAALPAEDDVGRMRAYNWQDVQELQEVLMSSIESMESSDEQVASLRTKLLDSVQQKKQVLGEESSTELAQ--------AVRVSTGTAFKASSQLSEKELLDALADSSKSAAVGVAKSVAAGVSSLGSYAKSPEAQDVAASTVDVIGAISGAAASIGGAFQAAKKEFDDNTMPAEDLTSFDKILTSFKSGINAVKDSTTVKANLDKAGELVGTTLPEAGGRVGKGAADALKGAASSDEIGNPLKETLTSAEKFIVSVAALGTKYFSTSRASRFQLP 1916
M+ +S IM+LA +ADGFY A G+ GG A+RC+A SR +S W+ RP T PS G + + A++ EP D P + AE+ GEG G E+ A + ESRT LSKRV EE + A R +RMA+LSSQLKRSFA+KEEVE MI +E+ L KL+QERDIE+ R +LK+LL EF ETI E A LR QV E SIRAP+E AMAKKADVTSIEVMLLEDLVECKE+LE+EL+STS+RA+TM+GVVAALPAE D+ R+RAYNWQDVQ+LQEVL+SS ESME+SD QV LRT+LLDSVQQKK+VLGE S EL A +++T AF+AS++LSE+ELL A+ +SSK+ A+GVAKSV+AG SSLG Y +SP QDVAASTV VIGA++GAAAS+ AF+AAKKEFD+N + E+LTSFDKIL S +S + AV++S VKA L +AG+L+ +P+A RVG G A+A+KGA ++ EI NP+K+ L S E+F+VS+AALGTKYF+ SRA+RFQLP
Sbjct: 16 MRCLSAAIMLLAVADQADGFYCAPGQIGGRASRCSAVSSSRKASSSTWSTRP------------------------------------------TTPSQGRSRSGYVLQASSTEPRDKDAP-----EGDKVGAEKKKGGEG--GGAEDAALATPA----------------------ESRTALLSKRVAEEGKTANQRAKRMANLSSQLKRSFAKKEEVETMITEEVAQLGTKLRQERDIEIARGADLKELLKEFDETIVEKQAEIEKEQDLLAQMQASALRGQVDEASIRAPIETAMAKKADVTSIEVMLLEDLVECKEKLEEELKSTSARAETMNGVVAALPAEGDIARLRAYNWQDVQDLQEVLVSSAESMEASDAQVGLLRTRLLDSVQQKKEVLGEVSKAELVAGGGRGGRGAKKMTTARAFQASTELSEEELLQAVTESSKNTALGVAKSVSAGTSSLGDYLRSPAGQDVAASTVLVIGALAGAAASVANAFKAAKKEFDENAVSGEELTSFDKILKSLQSSLKAVQESPAVKAELREAGDLLTKQVPQASARVGAGTAEAIKGAVTNSEISNPVKDALDSLEEFVVSLAALGTKYFTVSRAARFQLP 558
BLAST of mRNA_D-herbacea_F_contig113.1031.1 vs. uniprot
Match: D7FTP6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTP6_ECTSI) HSP 1 Score: 382 bits (980), Expect = 4.160e-120 Identity = 217/332 (65.36%), Postives = 273/332 (82.23%), Query Frame = 3
Query: 936 ALREQVQEPSIRAPVEAAMAKKADVTSIEVMLLEDLVECKEQLEDELQSTSSRADTMSGVVAALPAEDDVGRMRAYNWQDVQELQEVLMSSIESMESSDEQVASLRTKLLDSVQQKKQVLGEESSTELAQ-----AVRVSTGTAFKASSQLSEKELLDALADSSKSAAVGVAKSVAAGVSSLGSYAKSPEAQDVAASTVDVIGAISGAAASIGGAFQAAKKEFDDNTMPAEDLTSFDKILTSFKSGINAVKDSTTVKANLDKAGELVGTTLPEAGGRVGKGAADALKGAASSDEIGNPLKETLTSAEKFIVSVAALGTKYFSTSRASRFQLP 1916
ALR QV E SIRAP+E AMAKKADVTSIEVMLLEDLVECKE+LE+EL+STS+R DTM+GVVAALPAE D+ R+RAYNWQDVQ+LQ VL+SS ESME+SD QV LRT+L+DSVQQKK+VLGE S EL + A +++T AF+AS++LSE+ELL A+ +SSK+ A+GVAKSV+AG SSLG Y +SP QDVAASTV VIGA++GAA+S+ AF+AAKKEFD+N + E+LTSFDKIL S +S + AV++S VKA L +AG+L+ +P+A RVG G A+A+KGAA++ EI NP+K+ L S E+F+VS+AALGTKYF+ SRA+RFQLP
Sbjct: 3 ALRGQVDEASIRAPIETAMAKKADVTSIEVMLLEDLVECKEKLEEELKSTSARGDTMNGVVAALPAEGDIARLRAYNWQDVQDLQGVLVSSAESMEASDAQVGLLRTQLMDSVQQKKEVLGEVSKAELVEGGGRGARKMTTARAFQASTELSEEELLQAVTESSKNTALGVAKSVSAGTSSLGDYLRSPAGQDVAASTVLVIGALAGAASSVANAFKAAKKEFDENAISGEELTSFDKILKSLQSSLKAVQESPAVKAQLREAGDLLTKQVPQASARVGAGTAEAIKGAAANSEISNPVKDALDSLEQFVVSLAALGTKYFTVSRAARFQLP 334
BLAST of mRNA_D-herbacea_F_contig113.1031.1 vs. uniprot
Match: A0A835Z020_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z020_9STRA) HSP 1 Score: 216 bits (549), Expect = 1.510e-59 Identity = 142/342 (41.52%), Postives = 208/342 (60.82%), Query Frame = 3
Query: 939 LREQVQEPSIRAPVEAAMAKKADVTSIEVMLLEDLVECKEQLEDELQSTSSRADTMSGVVAALPAEDDVGRMRAYNWQDVQELQEVLMSSIESMESSDEQVASLRTKLLDSVQQKKQVLGEESSTELAQAVRVSTGTAFKASSQ----------------LSEKELLDALADSSKSAAVGVAKSVAAGVSSLGSYAKSPEAQDVAASTVDVIGAISGAAASIGGAFQAAKKEFDDNTMPAEDLTSFDKILTSFKSGINAVKDSTTVKANLDKAGELVGTTLPEAGGRVGKGAADALKGAASSDEIGNPLKETLTSAEKFIVSVAALGTKYFSTSRASRFQLP 1916
++ QV+E +IRA +AAMAKKAD+ SIEV+LLED+ +C+EQL EL ST +R D + GVVAALP DD R R Y+W+D+Q LQ++L+ S++SM SD +VA+LRTK D+V+QK++VLGE + V G+ + ++Q LS+ EL A SSK AAV + K+VA G SLG Y KSP+AQ +AA+ VD+ G +IG +F A K F NT+P E++TSFD + + + + +V+ S V A L + G +P G++G+ A +A+K A + E+G L E L++ + +V++A LGTK S++ LP
Sbjct: 4 VKAQVKEDAIRAQFQAAMAKKADLISIEVILLEDMSDCREQLVAELASTVTRVDRIDGVVAALPRSDDRSRARLYDWEDIQSLQDLLLESVQSMLDSDTKVAALRTKFEDAVRQKREVLGEIPAPSTVIEVVPEGGSGGEGAAQGSAALRPRVDLSSVSALSKDELSAAAGKSSKDAAVALGKTVAVGAQSLGDYLKSPKAQSLAATVVDLFQNTGGYFKAIGESFSVATKVFQQNTLPGEEITSFDTMFKTARDAVKSVQTSEEVAAALADVKQK-GQAVPSTAGKIGQLAGEAIKDAQQNKELGTALAEALSNVQSALVALAGLGTKLASSAPPPGRMLP 344
BLAST of mRNA_D-herbacea_F_contig113.1031.1 vs. uniprot
Match: A0A6V1Q3J9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1Q3J9_HETAK) HSP 1 Score: 150 bits (378), Expect = 1.720e-34 Identity = 154/455 (33.85%), Postives = 242/455 (53.19%), Query Frame = 3
Query: 645 TMQLSKRVDE-------EAQMATSRTRRMADLSSQLKRSFARKEEVEMMIADEIGLLSLKLKQERDIEMVREEELKQLLIEFRETIAEXXXXXXXXXXXXXXXXALREQVQEPSIRAPVEAAMAKKADVTSIEVMLLEDLVECKEQLEDELQSTSSRADTMSGVVAALPAEDDVGRMRAYNWQDVQELQEVLMSSIESMESSDEQVASLRTKLLDSVQQKKQVLGEES--------STELAQAVRVSTG---------TAFKASSQLSEKELLDALADSSKSAAVGVAKSVAAGVSSLGSYAKSPEAQDVAASTVDVIGAISGAAASIGGAFQAAKKEFDDNTMPAEDLTSFDKILTSFKSGINAVKDSTTVKANLDKAGELVGTTLPEAGGRVGKGAADALKGAASSD----EIGNPLKETLTSAEKFIVSVAALGTKYFSTSRASRFQLPDKQ 1925
T+Q SK +DE SR R+ D+ SQL +S K+E E IA EIG L +KL E + E E E+K L+ + E XXXXXXXXXXXXXXXX ++ QV+E I ++AA KAD+ +IE +++EDL +C Q+ +EL T SR TM+ V+ LPA DD+ R Y+W +V EL ++L+++ ++++ D ++ +L+ K ++ QQK +LGE + A AV G + + SS ++E+++L DSS A ++++ + L +AKS + Q + +D I A ++ A KKE++ E++T+FDK+ + GI+A+K+ST VKA LD+A G + G + ALK + + D E N + E + +K +++VAA GTK+ FQ P++Q
Sbjct: 97 TIQRSKALDELMEESIFSQNKGISRKTRIEDVKSQLSKSINLKKEAENAIAKEIGELKVKLDGELEEEKGLEIEIKMLISQLEENXXXXXXXXXXXXXXXXXXXXVKTQVKEEQIFKQIDAASNVKADLIAIESVVIEDLEDCLSQMREELIDTESRIKTMTVAVSQLPAADDIDTARQYSWGEVSELNDLLVAAFDNLQKRDARIGALKQKFREATQQKALILGEVDVLGGGAGDGAKAAAAVAGGAGGKVGSPKKVVSVQISSDMTEQDILALAGDSSMKALGEGSRALGQVGTKLNYWAKSEDGQQSVSELIDAIEASKKVLPALQRAAAQVKKEWETE-FKGEEMTTFDKLFDGIQRGIDAIKESTEVKAALDEAKGSFGAVGAKTGAATQR-MTTALKSSTAEDATFMESFNAVVEEM---QKTLIAVAAAGTKF-----VKNFQDPNRQ 541
BLAST of mRNA_D-herbacea_F_contig113.1031.1 vs. uniprot
Match: A0A6U1MNE3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1MNE3_9STRA) HSP 1 Score: 100 bits (250), Expect = 1.150e-18 Identity = 101/417 (24.22%), Postives = 208/417 (49.88%), Query Frame = 3
Query: 696 RTRRMADLSSQLKRSFARKEEVEMMIADEIGLLSLKLKQERDIEMVREEELKQLLIEFRETIAEXXXXXXXXXXXXXXXXALREQVQEPSIRAPVEAAMAKKADVTSIEVMLLEDLVECKEQLEDELQSTSSRADTMSGVVAALPAE--DDVGRMRAYNWQDVQELQEVLMSSIESMESSDEQVASLRTKLLDSVQQKKQVL-GEE------------SSTELAQAVRVST-GTAFKASS-------QLSEKELLDALADSSKSAAVGVAKSVAAGVSSLGSYAKSPEAQDVAASTVDVIGAISGAAASIGGAFQAAKKEFDDNTMPAEDLTSFDKILTSFKSGINAVKDSTTVKANLDKAGELVGTTLPEAGGRVGKGAADALKGAASSDEIGNPLKETLTSAEKFIVSVAALGTK 1877
R RR+ +S L +S +K+++E +A E+ + ++ ++ E++K LL + + ++E++++ ++R +E A++ KA++ +IE+++ ++L C QL +Q T R D M + +LP + D R Y+W++VQELQE+L+ SIE+ + + ++ +++ K ++++Q++ VL G E S + +A +V KA+S ++E ++L+ DS A ++V A V S G + +S + QD A + V+ + ++G AS+ + F++N++ +D+T+F I SF + ++ S V+ +++ V + + + DA+ G ++ EI L + SA+K ++++AA G K
Sbjct: 39 RMRRIDGMSQSLGKSLMKKQQIEETLAVEVEGIRQEMAYMLKEDLRDSEQMKVLLADLDLALTSKKAQVKKEENLLLNMEEVKERIEDAALRELMECAISAKANLVAIEMVVAQELETCIVQLRANIQDTRERCDLMKVALDSLPGQGQDLQALARQYSWEEVQELQELLLDSIEACQERNFKINNIKLKFAEALRQRQSVLEGVELLNAGGRAALYPSKEQQRRAQQVGAMAEVMKAASVKLTITRDMTEVDMLNVAKDSLVDFATNSTQAVGAIVISTGQWVQSEQGQDAAGAVVNAVTGVTGFFASVKDVVVTVVETFNNNSVKGDDMTNFKIIANSFINATASIPKSKEVQESVNNMNANVKQAVGGTSDFL-QLTGDAIAGGMATPEIYKALVCSSVSAQKLLIALAATGAK 454 The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig113.1031.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-herbacea_F_contig113.1031.1 >prot_D-herbacea_F_contig113.1031.1 ID=prot_D-herbacea_F_contig113.1031.1|Name=mRNA_D-herbacea_F_contig113.1031.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=744bp MVVRGSGGRGRPSSFVAREMQRVSGVIMVLAAVHEADGFYSATGRFGGAAback to top mRNA from alignment at D-herbacea_F_contig113:591957..620128+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-herbacea_F_contig113.1031.1 ID=mRNA_D-herbacea_F_contig113.1031.1|Name=mRNA_D-herbacea_F_contig113.1031.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=28172bp|location=Sequence derived from alignment at D-herbacea_F_contig113:591957..620128+ (Desmarestia herbacea DmunF female)back to top Coding sequence (CDS) from alignment at D-herbacea_F_contig113:591957..620128+ >mRNA_D-herbacea_F_contig113.1031.1 ID=mRNA_D-herbacea_F_contig113.1031.1|Name=mRNA_D-herbacea_F_contig113.1031.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=4464bp|location=Sequence derived from alignment at D-herbacea_F_contig113:591957..620128+ (Desmarestia herbacea DmunF female)back to top |