mRNA_D-herbacea_F_contig113.1028.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig113.1028.1
Unique NamemRNA_D-herbacea_F_contig113.1028.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig113.1028.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig113contigD-herbacea_F_contig113:579289..579688 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size401
Cds size399
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927530.3817413-CDS-D-herbacea_F_contig113:579288..5796871622927530.3817413-CDS-D-herbacea_F_contig113:579288..579687Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig113 579289..579687 +
1690790218.105701-CDS-D-herbacea_F_contig113:579288..5796871690790218.105701-CDS-D-herbacea_F_contig113:579288..579687Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig113 579289..579687 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig113.1028.1prot_D-herbacea_F_contig113.1028.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig113 579289..579687 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig113.1028.1

>prot_D-herbacea_F_contig113.1028.1 ID=prot_D-herbacea_F_contig113.1028.1|Name=mRNA_D-herbacea_F_contig113.1028.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=133bp
PGTLNKAWLIITAMLTQQMSQKEAFTKTPLTTTVVSNQHQGHTRQPRSTA
KRLVSYTTHRDKLTWTHTSFLRRPIRKKSKSLTCPPLLVQPTPHKKRTHT
RTHIHTHTYLPRTISIPTFDAKSIYESQSIKTK
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mRNA from alignment at D-herbacea_F_contig113:579289..579688+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig113.1028.1 ID=mRNA_D-herbacea_F_contig113.1028.1|Name=mRNA_D-herbacea_F_contig113.1028.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=400bp|location=Sequence derived from alignment at D-herbacea_F_contig113:579289..579688+ (Desmarestia herbacea DmunF female)
CCAGGTACACTAAATAAAGCTTGGCTTATCATTACTGCAATGCTTACCCA
GCAGATGAGCCAGAAAGAGGCCTTCACGAAAACACCACTCACTACTACTG
TAGTCTCCAACCAGCACCAGGGCCACACACGTCAACCACGTTCCACTGCC
AAGCGCCTTGTATCATATACTACGCATCGAGACAAGCTTACGTGGACACA
TACATCATTCCTGAGGAGACCGATCCGAAAAAAAAGTAAATCTCTCACGT
GTCCCCCGCTCCTTGTACAGCCCACCCCACACAAAAAACGAACACACACA
CGCACACACATACACACTCACACCTATCTGCCGCGAACGATTTCCATTCC
CACGTTCGACGCAAAATCAATCTATGAGAGTCAATCGATCAAAACAAAGC
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Coding sequence (CDS) from alignment at D-herbacea_F_contig113:579289..579688+

>mRNA_D-herbacea_F_contig113.1028.1 ID=mRNA_D-herbacea_F_contig113.1028.1|Name=mRNA_D-herbacea_F_contig113.1028.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=798bp|location=Sequence derived from alignment at D-herbacea_F_contig113:579289..579688+ (Desmarestia herbacea DmunF female)
CCAGGTACACTAAATAAAGCTTGGCTTATCATTACTGCAATGCTTACCCA
GCAGATGAGCCAGAAAGAGGCCTTCACGAAAACACCACTCACTACTACTG
TAGTCTCCAACCAGCACCAGGGCCACACACGTCAACCACGTTCCACTGCC
AAGCGCCTTGTATCATATACTACGCATCGAGACAAGCTTACGTGGACACA
TACATCATTCCTGAGGAGACCGATCCGAAAAAAAAGTAAATCTCTCACGT
GTCCCCCGCTCCTTGTACAGCCCACCCCACACAAAAAACGAACACACACA
CGCACACACATACACACTCACACCTATCTGCCGCGAACGATTTCCATTCC
CACGTTCGACGCAAAATCAATCTATGAGAGTCAATCGATCAAAACAAAGC
CAGGTACACTAAATAAAGCTTGGCTTATCATTACTGCAATGCTTACCCAG
CAGATGAGCCAGAAAGAGGCCTTCACGAAAACACCACTCACTACTACTGT
AGTCTCCAACCAGCACCAGGGCCACACACGTCAACCACGTTCCACTGCCA
AGCGCCTTGTATCATATACTACGCATCGAGACAAGCTTACGTGGACACAT
ACATCATTCCTGAGGAGACCGATCCGAAAAAAAAGTAAATCTCTCACGTG
TCCCCCGCTCCTTGTACAGCCCACCCCACACAAAAAACGAACACACACAC
GCACACACATACACACTCACACCTATCTGCCGCGAACGATTTCCATTCCC
ACGTTCGACGCAAAATCAATCTATGAGAGTCAATCGATCAAAACAAAG
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