mRNA_D-herbacea_F_contig113.1015.1 (mRNA) Desmarestia herbacea DmunF female
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Overview
Homology
BLAST of mRNA_D-herbacea_F_contig113.1015.1 vs. uniprot
Match: A0A6H5L0M4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0M4_9PHAE) HSP 1 Score: 315 bits (807), Expect = 1.750e-98 Identity = 138/237 (58.23%), Postives = 176/237 (74.26%), Query Frame = 2
Query: 1394 MRPHSELTSNCFGFPASNFDRDHCIEGEHGTTPVMMLDEDQDAIDFTLHD-PHGNAWNLRDALDG----RKMPVVMIWGMYTCPAYQGMGT---SPPWEKCGYRDEYDLVESHKDRATFIHLYGAEPHPVSPATNFDHGITVTNYWSTVGQAMTYQERLGMAARIQHLTHPAQVMLLDYLPGNPYSDLIQPVWCSYSLGARPAIVISPEGTVFFQQEWLQTEELGNAIDRFWAAKSD 2080
+RP SELT NCF FP++NFDR + G +G +P ++L+ AIDFT HD P G WNLR+ L+G PVV+IWGM+TCPA+QGMG SPPW+KCGYRDEYDLVE++KDR TF+HLYG EPHP +PATNFDHG+ V +YWSTV Q +Y++RL M R++ L HP Q ++ DY+PGNPYSDLI P+WCSY +GARPA I+ +GT+F+QQEWL T +L N +D F + D
Sbjct: 31 LRPESELTGNCFDFPSNNFDRQRSMIGMYGQSPKLLLETGSGAIDFTSHDYPAGEPWNLREHLEGVGGDAGKPVVLIWGMFTCPAFQGMGDQPPSPPWDKCGYRDEYDLVETYKDRVTFVHLYGPEPHPTAPATNFDHGVVVNSYWSTVPQPKSYEQRLAMVDRVKDLVHPEQAIIPDYMPGNPYSDLINPLWCSYGIGARPATAIAQDGTIFYQQEWLHTGDLANELDVFLEGRGD 267
BLAST of mRNA_D-herbacea_F_contig113.1015.1 vs. uniprot
Match: D8LCJ3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCJ3_ECTSI) HSP 1 Score: 309 bits (791), Expect = 2.890e-94 Identity = 133/229 (58.08%), Postives = 169/229 (73.80%), Query Frame = 2
Query: 1382 ARGGMRPHSELTSNCFGFPASNFDRDHCIEGEHG-TTPVMMLDEDQDAIDFTLHDPHGNAWNLRDALDGRKMPVVMIWGMYTCPAYQGMGTSPPWEKCGYRDEYDLVESHKDRATFIHLYGAEPHPVSPATNFDHGITVTNYWSTVGQAMTYQERLGMAARIQHLTHPAQVMLLDYLPGNPYSDLIQPVWCSYSLGARPAIVISPEGTVFFQQEWLQTEELGNAIDRFW 2065
A +RP ++LTSNCF FPA+NFDR++ I+ +G TP + L +DA+DFTLHD G WNL + L+ +PVVM+WGM+ CP +QG GT PPW+KCGYRDEYDLVE++ +ATF+HLYG EPHP P TNFD G T +WS QA +Y ER MA RI L HP+Q +L+DYLPGNPYS+LIQPVWCSYS+GARP V+SP+G +FFQ+ W +E +G AID +W
Sbjct: 125 ANAELRPEADLTSNCFDFPANNFDRENSIKAVNGGNTPYLPLTVGEDAVDFTLHDLEGRRWNLGETLERTGLPVVMVWGMFICPGFQGYGTYPPWDKCGYRDEYDLVEAYGGKATFVHLYGPEPHPAMPGTNFDIGTTWQAFWSVYPQATSYDERAAMAQRINRLIHPSQDILVDYLPGNPYSELIQPVWCSYSMGARPVTVVSPDGKLFFQRAWFHSEHVGRAIDEYW 353
BLAST of mRNA_D-herbacea_F_contig113.1015.1 vs. uniprot
Match: A0A6H5KKN7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKN7_9PHAE) HSP 1 Score: 310 bits (795), Expect = 7.230e-94 Identity = 135/229 (58.95%), Postives = 171/229 (74.67%), Query Frame = 2
Query: 1382 ARGGMRPHSELTSNCFGFPASNFDRDHCIEGEHG-TTPVMMLDEDQDAIDFTLHDPHGNAWNLRDALDGRKMPVVMIWGMYTCPAYQGMGTSPPWEKCGYRDEYDLVESHKDRATFIHLYGAEPHPVSPATNFDHGITVTNYWSTVGQAMTYQERLGMAARIQHLTHPAQVMLLDYLPGNPYSDLIQPVWCSYSLGARPAIVISPEGTVFFQQEWLQTEELGNAIDRFW 2065
A +RP S+LTSNCF FPA+NFDR++ I+ +G TP + L +DA+DFTLHD G WNL + L+ +PVVM+WGM+TCPA+QG GT PPW+KCGYRDEYDLVE++ +ATF+HLYG EPHP P TNFD G T +WS QA Y+ER+ MA RI HP+Q +L+DYLPGNPYS+LIQPVWCSYS+GARP V+SP+G +FFQ+ W +E +G AID +W
Sbjct: 155 ASAELRPESDLTSNCFDFPANNFDRENSIKAVNGGNTPYLPLTVGEDAVDFTLHDLKGRRWNLGETLERTGLPVVMVWGMFTCPAFQGYGTYPPWDKCGYRDEYDLVEAYGGKATFVHLYGPEPHPAMPGTNFDIGTTWQAFWSVFQQATRYEERVAMAQRIGRRIHPSQDILVDYLPGNPYSELIQPVWCSYSMGARPVTVVSPDGKLFFQRGWFHSEHVGRAIDEYW 383
BLAST of mRNA_D-herbacea_F_contig113.1015.1 vs. uniprot
Match: A0A6H5JSG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSG9_9PHAE) HSP 1 Score: 239 bits (611), Expect = 6.410e-70 Identity = 117/255 (45.88%), Postives = 160/255 (62.75%), Query Frame = 2
Query: 1400 PHSELTSNCFGFPASNFDRDHCIEGEHGTTPVMMLDEDQDAIDFTLHDPHGNAWNLRDALD-GRKMPVVMIWGMYTCPAYQGM----GTSPPWEKCGYRDEYDLVESHKDRATFIHLYGAEPHPVSPATNFDHGITVTNYWSTVGQAMTYQERLGMAARIQHLTHPAQVMLLDYLPGNPYSDLIQPVWCSYSLGARPAIVISPEGTVFFQQEWLQTEELGNAIDRFWAAKSD*AETETHGIGVDLEGRC*ILAPQ 2149
P +EL +NC+ FP NF + + I +GT+P ++ D A+DFTLHD GN WNL + L G PVVMI+GM+TCPA+QG+ G+ W Y E++LVE + D+A F+H+YG EPHP P NFD G N WS Q + Y R+ A +I+ +THP +V+L DYL GNPYS L QPVWC+Y+ GARP++++S G++F+QQEW+ TE L NAID +W E + G D EG +L P+
Sbjct: 29 PETELITNCYNFPEENFHKGNSIRDIYGTSPHLVRDLGSPAVDFTLHDLDGNRWNLGEVLAAGAGKPVVMIFGMWTCPAFQGLDAAEGSGNTW---AYWHEHNLVEQYGDKAIFVHIYGPEPHPQPPDLNFDSGSFAPNAWSVYRQPVMYDVRVEKAKKIRSITHPDEVVLPDYLTGNPYSSLNQPVWCTYANGARPSVMVSSSGSIFYQQEWMSTEGLENAIDGYW-------EQDGAGTWDDGEGASPVLNPR 273
BLAST of mRNA_D-herbacea_F_contig113.1015.1 vs. uniprot
Match: D8LC80_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC80_ECTSI) HSP 1 Score: 229 bits (584), Expect = 2.460e-66 Identity = 112/228 (49.12%), Postives = 149/228 (65.35%), Query Frame = 2
Query: 1445 NFDRDHCIEGEHGTTPVMMLDEDQDAIDFTLHDPHGNAWNLRDALD-GRKMPVVMIWGMYTCPAYQGM----GTSPPWEKCGYRDEYDLVESHKDRATFIHLYGAEPHPVSPATNFDHGITVTNYWSTVGQAMTYQERLGMAARIQHLTHPAQVMLLDYLPGNPYSDLIQPVWCSYSLGARPAIVISPEGTVFFQQEWLQTEELGNAIDRFWAAKSD*AETETHGIGV 2113
NF + + + +GT+P ++ D A+DFTLHD GN WNL + L G PVV+I+GM+TCPAYQG+ G+ W Y DE+ LVE + D+A F+H+YG EPHP P NFD G N+WS Q + Y R+ A +I+ +THP +V+L DYL GNPYS L QPVWC+Y+ GARP++++S G+VF+QQEWL TE LGNAID +W + D A T G GV
Sbjct: 19 NFHKGNSVRDIYGTSPHLVRDLGSPAVDFTLHDLDGNRWNLGEVLAAGEGKPVVLIFGMWTCPAYQGLDVIEGSGNTWS---YWDEHTLVEQYGDKAIFVHIYGPEPHPKPPDLNFDAGTFSPNFWSVHRQPVIYDVRVEKAKKIRSITHPDEVVLPDYLTGNPYSSLNQPVWCTYANGARPSVMVSSSGSVFYQQEWLSTEGLGNAIDGYW--EQDGAGTWDDGEGV 241
BLAST of mRNA_D-herbacea_F_contig113.1015.1 vs. uniprot
Match: A0A835Z1L4_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1L4_9STRA) HSP 1 Score: 216 bits (551), Expect = 5.210e-62 Identity = 104/233 (44.64%), Postives = 142/233 (60.94%), Query Frame = 2
Query: 1382 ARGGMRPHSELTSNCFGFPASNFDRDHCIEGEHGTTPVMMLDEDQDAIDFTLHDPHGNAWNLRDALDGRKMPVVMIWGMYTCPAYQGMGTSPPWEKCGYRDEYDLVESHKDRA---TFIHLYGAEPHPVSPATNFDHGITVTNYWSTVGQAMTYQERLGMAARIQHLTHPAQVMLLDYLPGNPYSD-----LIQPVWCSYSLGARPAIVISPEGTVFFQQEWLQTEELGNAID 2056
A +R SELT +C+GFP NF+ +CI+ +GT+P ++LD AIDFTL+D G AW L + L + PV +IWGM+TCPA++G+GT+ P+++C Y DE LV ++ F HL G EPHP++P TNFD G+ N+WSTV QA TY R+ MA + HP +L D LP PY D QPVWCSY+ GAR A++I +G V Q W ++ AI+
Sbjct: 1 AASQLRDASELTDSCYGFPDDNFNGTNCIKCTYGTSPHIVLDAGAAAIDFTLYDLDGAAWTLSEHLASQ--PVCLIWGMHTCPAFEGLGTASPFDECAYWDEAALVAAYGGSGGGVAFAHLVGPEPHPITPDTNFDSGVVKVNFWSTVAQARTYDARVAMARAVADKVHPNAALLPDLLPDAPYGDGDAAAAAQPVWCSYAHGARTAVLIGTDGVVRLAQTWFHAGDMAAAIE 231
BLAST of mRNA_D-herbacea_F_contig113.1015.1 vs. uniprot
Match: A0A7S3K7C6_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K7C6_9STRA) HSP 1 Score: 184 bits (467), Expect = 9.520e-50 Identity = 94/229 (41.05%), Postives = 134/229 (58.52%), Query Frame = 2
Query: 1412 LTSNCFGFPASNFDRDHCIEGEHGTTP---VMMLDEDQDAID-FTLHDPHGNAWNLRDALDGRKMPVVMIWGMYTCPAYQGMGT--SPPWEKCGYRDEYDLVESHKDRAT-FIHLYGAEPHPVSPATNFDHGITVTNYWSTVGQAMTYQERLGMAARIQHLTHPAQVMLLDYLPGNPYSDLI-------QPVWCSYSLGARPAIVISPEGTVFFQQEWLQTEELGNAID 2056
+ ++CF FP +F +C++ +G +P V + D + TL G++W K+ V+ IWGM+TCPA+QG+GT SPP+++C YRDEYDLVE++ ++ FIHL G EPHP++P NFD G + NYWST+ Q T+ +RL +A R L HP + L+D L P QP WC+ LGAR AI+I GTV F Q+W + +L NA+D
Sbjct: 21 IEADCFDFPKRSFSTTNCVKCTYGASPHIPVSVGDNISPQLQALTLSTASGSSWKSLGTETSGKISVL-IWGMWTCPAFQGLGTGGSPPFDECSYRDEYDLVETYANKGVRFIHLIGPEPHPITPDVNFDSGKQLMNYWSTIAQPKTWDDRLQVAQRTAALIHPRSLTLVDPLADAPTQHKEGTEGFKNQPTWCTLGLGARTAILIDQHGTVQFTQDWFRKSDLANALD 248
BLAST of mRNA_D-herbacea_F_contig113.1015.1 vs. uniprot
Match: A0A7S2RV85_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RV85_9STRA) HSP 1 Score: 177 bits (448), Expect = 4.700e-47 Identity = 88/231 (38.10%), Postives = 128/231 (55.41%), Query Frame = 2
Query: 1379 MARGGMRPHSELTSNCFGFPASNFDRDHCIEGEHGTTPVMMLDE--DQDAIDFTLHDPHGNAWNLRDALDGRKMPVVMIWGMYTCPAYQGMGTSPPWEKCGYRDEYDLVESHKDRATFIHLYGAEPHPVSPATNFDHGITVTNYWSTVGQAMTYQERLGMAARIQHLTHPAQVMLLDYLPGNPYSDL---IQPVWCSYSLGARPAIVISPEGTVFFQQEWLQTEELGNAID 2056
+A + P S+L+S CFG P F I + + A+DFTL+D GN L L+ + PV +IWGM+TCPA+QG+ + P+++ +E+D+VE +KD TF+HL G EPHP++P NFD G WSTV Q Y ERL +A ++ HP +L D PGN Y+ PVWC+ L +R A+++ +GT+ F Q W + ++L AID
Sbjct: 22 VALAELDPASQLSSGCFGLPEKGFGLQSNIAQVDADGEAVWVSRAAGDSAVDFTLYDLAGNEVTLSTLLEDK--PVALIWGMWTCPAFQGLRSDYPFDQNSRWEEWDVVEKYKDVVTFLHLVGPEPHPLAPDQNFDKGYVWMESWSTVRQPTNYDERLVLANKVAEYVHPDATVLADLYPGNSYAAADVSSNPVWCTMGLHSRSALLVDQDGTITFSQSWFRKDDLSAAID 250
BLAST of mRNA_D-herbacea_F_contig113.1015.1 vs. uniprot
Match: A0A7S2C362_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2C362_9STRA) HSP 1 Score: 140 bits (353), Expect = 3.820e-32 Identity = 77/225 (34.22%), Postives = 115/225 (51.11%), Query Frame = 2
Query: 1406 SELTSNCFGFPASNFDRDHCIEGEHGTTPVMMLDEDQDAIDFTLHDPHGNAWNLRDALDGRKMPVVMIWGMYTCPAYQGMGTSPPWEKCGYR-DEYDLVESHKDRATFIHLYGAEPHPVSPATNFDHGITVTNYWSTVGQAMTYQERLGMAARIQHLTHPAQVMLLDYLPGNPYSDLIQ-------PVWCSYSLGARPAIVISPEGTVFFQQEWLQTEELGNAID 2056
S L CF FP+S+FD D+ I + P ++ AIDF L N + LRD + R PVVM++GM TCPA+QG+ E + D++ LV+ + F++LY EPHP++P NFD G V WST Q TY++R A + H ++L+D L +L + PVWC+Y G+R A +I +G ++ Q W + A++
Sbjct: 56 SNLIGKCFNFPSSDFDYDNSINAYYPNDPTPLVARGGFAIDFALPSLDDNVYYLRDLI--RTKPVVMVYGMLTCPAFQGLYLEDHKESHFSKYDQWALVDKYHKDFHFVNLYSVEPHPMAPDKNFDTGGHVEYAWSTFRQPRTYRDRGYFAQNLAEELHEKSILLVDNLGNEKLPELKENNIPEYNPVWCTYGPGSRMAFLIGQDGKLYNVQGWFHATTMAGAME 278
BLAST of mRNA_D-herbacea_F_contig113.1015.1 vs. uniprot
Match: A0A7S2G552_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G552_9STRA) HSP 1 Score: 98.6 bits (244), Expect = 3.730e-19 Identity = 71/230 (30.87%), Postives = 109/230 (47.39%), Query Frame = 2
Query: 1403 HSELTSNCFGFPASNFDRDHCIEGEHGTTPVMMLDEDQDAIDFTLHDPHGNAWNLRDALDGRKMPVVMIWGMYTCPAYQGMGTSPPWEKCGYRDEYDLVESHKDRATFIHLYGAEPHPVSPATNFDHGITVTNYWSTVGQAMTYQERLGMAARIQHLTHPAQVMLLDYLPGNPYSDLIQPVWCSYSLGARPAIVISPEGTVFFQQEWLQTEELGNAIDRFWAAKSD*AET 2092
HS LT +CFG+P ++F ++ + +G P + A+DFT+ G NL+ L + PVVMI+GMYTCP G+ E +L E + D F+H+Y +PHP SP N D G +ST+ + Y RL +A +++D +P + P+WC+Y R A +I +G + Q W G+ D F AA ++ A+T
Sbjct: 39 HSLLT-DCFGWPEASFSPENSVLSLYGQQPYLTRRTGDPAVDFTMKTIDGEVVNLKALLSTK--PVVMIFGMYTCPVTHAT--------LGH--ERNLTELYGDDVHFLHIYSMDPHPESPQKNPDIGRVWEFDYSTIERPNNYTGRLELAKATAGTWGLNSKVIVD--EASPLRN--NPLWCTYGPSPRSAHLIRQDGIIQLAQTWFD----GSDRD-FVAASNEMADT 246 The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig113.1015.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-herbacea_F_contig113.1015.1 >prot_D-herbacea_F_contig113.1015.1 ID=prot_D-herbacea_F_contig113.1015.1|Name=mRNA_D-herbacea_F_contig113.1015.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=253bp MSFFIRTYLLLLWFCTAQMARGGMRPHSELTSNCFGFPASNFDRDHCIEGback to top mRNA from alignment at D-herbacea_F_contig113:361856..370772+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-herbacea_F_contig113.1015.1 ID=mRNA_D-herbacea_F_contig113.1015.1|Name=mRNA_D-herbacea_F_contig113.1015.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=8917bp|location=Sequence derived from alignment at D-herbacea_F_contig113:361856..370772+ (Desmarestia herbacea DmunF female)back to top Coding sequence (CDS) from alignment at D-herbacea_F_contig113:361856..370772+ >mRNA_D-herbacea_F_contig113.1015.1 ID=mRNA_D-herbacea_F_contig113.1015.1|Name=mRNA_D-herbacea_F_contig113.1015.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=1518bp|location=Sequence derived from alignment at D-herbacea_F_contig113:361856..370772+ (Desmarestia herbacea DmunF female)back to top |