mRNA_D-herbacea_F_contig113.1003.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig113.1003.1
Unique NamemRNA_D-herbacea_F_contig113.1003.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig113.1003.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig113contigD-herbacea_F_contig113:115050..119258 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size571
Cds size570
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig113.1003.1prot_D-herbacea_F_contig113.1003.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig113 115051..119258 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927529.8901634-CDS-D-herbacea_F_contig113:115050..1152381622927529.8901634-CDS-D-herbacea_F_contig113:115050..115238Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig113 115051..115238 -
1690790217.8796484-CDS-D-herbacea_F_contig113:115050..1152381690790217.8796484-CDS-D-herbacea_F_contig113:115050..115238Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig113 115051..115238 -
1622927529.9025137-CDS-D-herbacea_F_contig113:116077..1161801622927529.9025137-CDS-D-herbacea_F_contig113:116077..116180Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig113 116078..116180 -
1690790217.8898392-CDS-D-herbacea_F_contig113:116077..1161801690790217.8898392-CDS-D-herbacea_F_contig113:116077..116180Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig113 116078..116180 -
1622927529.9166772-CDS-D-herbacea_F_contig113:116608..1167371622927529.9166772-CDS-D-herbacea_F_contig113:116608..116737Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig113 116609..116737 -
1690790217.8983998-CDS-D-herbacea_F_contig113:116608..1167371690790217.8983998-CDS-D-herbacea_F_contig113:116608..116737Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig113 116609..116737 -
1622927529.9322126-CDS-D-herbacea_F_contig113:119108..1192581622927529.9322126-CDS-D-herbacea_F_contig113:119108..119258Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig113 119109..119258 -
1690790217.910345-CDS-D-herbacea_F_contig113:119108..1192581690790217.910345-CDS-D-herbacea_F_contig113:119108..119258Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig113 119109..119258 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig113.1003.1

>prot_D-herbacea_F_contig113.1003.1 ID=prot_D-herbacea_F_contig113.1003.1|Name=mRNA_D-herbacea_F_contig113.1003.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=190bp
GFATRRSLQGFAKGAGRKVDVRAGGGGEMWSPLDMAVRPLQAFAGVIQKQ
AEALEGELSRRVSGAEAGFNNERAAMKATLAGERLASKAKLEEAEQQLVR
LREVAAEKQKADEMTKKISAEAEQATAVYNASAMKLQAEAASVRKQLEKE
KAAVAAAQAEAGSVRAAQKKEKAAAQARQKTLNEELERER
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mRNA from alignment at D-herbacea_F_contig113:115050..119258-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig113.1003.1 ID=mRNA_D-herbacea_F_contig113.1003.1|Name=mRNA_D-herbacea_F_contig113.1003.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=4209bp|location=Sequence derived from alignment at D-herbacea_F_contig113:115050..119258- (Desmarestia herbacea DmunF female)
GGGTTTGCTACGCGGCGGAGTTTGCAAGGGTTCGCTAAGGGTGCTGGGAG
GAAGGTGGATGTCCGCGCAGGCGGAGGCGGGGAGATGTGGTCGCCGTTGG
ATATGGCAGTTCGTCCGTTGCAAGCGTTTGCTGGGGTAATACAGAAGCAG
GTGAGACTGGCTTTGTACACGTTTTTTTGTTGTAAGTTTTTGGTGTTTTT
TATTTTTGTTTAATTTTTATCCTCTTGTGGACGGGTGAAAATATAGCTTG
AGCAACCTTCCGCGGTTTCTGATATAAAGCGGCGTCGTGATCGCCGATTT
AACCCTATTGTAGAACACAATGTTGCCGTTACAGCGAGGGCAGGTGGGAG
GTGATTGGCCTTGGAGGTAGCCACCCGAAGAAGCGACGTGTAAAGTCACC
CCCGGCATTGTAGGGATGCGAGGGTCTATGGTCATGCAACTACGGCCATG
CATGAAATGAGTACCCCCTCCCTCGGTAGTGTGGGACTTGTTGTTTCCGA
TATATTGATGGTAACTTTCATGAAATGCGAAAATTTTTATTTATTCATAC
TATTTCAAGACCTACTCTTATTGCTTGCTCCTTACGAAACGGCACATATT
TCATGACGCGCCAAAATGTAATCGATTCATAGTAATTCAAGACATGCATT
AATTTCCCAATCCGTAGGACACGCTACGGCGCTCTCCAGATCCGATTTTT
CCTTGGCCACGCCGACGCGGAGGAAAGTGGCGGGGTGGGGGGGTACTCAT
TTGCTGCTTACCTTAGTTATATGACCATTGACCATTGACCACGCATCCCT
TTCGAGACGGAGCATCATTCCTACTCCTAATAGAGACACCTCCAGCATTT
GGGCGCTCTTTACGTTTTAGGTTTTTGCCATATCTTTTACCTTTTGCTTG
TCTTATCCCCTTTCTGCTTCGTCTTTTTTGTGGCGACCATCTATGTCCTA
GGATAAATTAGCGATCGTTTTCTCATCTTTTTGTACAATCATACCTGGTA
TACCAACTTTTTCATGCCGCATACATCTGTTTTCCTCATCTCCTCCTCTA
ACATATTATCGTCTCCTACGATATTGAAAATTAATTGATGTCTTGAATTA
GTATGAATTAACATATTATCGTCTCCTACGATATTGAAAATTGATTGATG
TCTTGAATTAGTATGAATTAACATATTATCGTCTCCTACGTAAGTGAAAA
TTAATTAATTCAACCAATTTTTATTGTTATATATAAATACGAGTACAGAA
CTAAAATCAAGCTAATATTCACTATTAGTAGATAAGTCACACAGTTTTAC
GTTTCGGTTTTGAATTTATTTCTGTTTCATATCCCGTTCCTCATTTGTGT
AGATCACATTATCCCACTATGTGAGTAGAACGGGTCATTGGTTGGAAAAT
AACATGTGTGTATATAAAAATGTCGAGTATGTACCTGCATGAGACACGTG
GGTGCGGGCAAACAGCAGCATTTTTGTCTCGCATGGATTTGAGAAGCAGA
CAGAGTTGTTGGTTCAGCGCGGAGCGAGCATTGAGGGTACGGTACAGGAG
AGCTATCTCTTTGTGCGTTATTCTGAGCAGCACGAGTGGGCAGAGGAGGG
GGCATATTGAGCTAATGTTTGTTGGGTGTTTTGATAGTCTGTAGGGCTCT
CCTCCTGCCTGCGACCTATATGTGTAGCATCCCCACCAGGCGCACATCGC
TCCCTTGTGCTACAGTCTGCCGTGGCAGACTTCTGCAAGCGGTGGATTTC
GAATATAATAGCTTGTTTGGAGGGGAGTGCCTGTTAGAATACATAGTGCC
GGGGCTCCATCTGATGTGTTGTATACAAACGTTCCTGGTCTAGTATCCTT
CCGAAAATCGTGGCAGTACACGTCCCACCCTACTCCGTTTCGTTTTGGTC
TGTGAACCCTTCTGGGGGCGAGTTCCACAGTTTTCCTCGGGCCGTTGTTG
TTTTTGTTGTTGTTGTTGTTGTTGTTGTCGTTGTTGTTGTTGTTGTTGTT
GTTTTTTATGTCTTTTTTTTTGTGTTACAAAACTCCAATAATTGTCGGGT
ATCACAGATCCATGTATGTACACGAGTAGTGGGTACGAGTGGTACATTTC
GGGTATATACGCCAAGCAACCCAAGGGTGGCAGTTTTTTGTTGCGGCTGT
TGGCCACTGCAGTAGTCCTTGCGCGAGCGGTGCTAGGGACCGTCCAGCAG
CACCATAACACGCGTAACACATACATACATAGACACGCTGTCCGTTGCGT
GCAGGGGTGTTTAAATGTGTAACGCGTAACGCCTGATTTAATTGATATAC
GTATATATTGCATGTCTGTTTAACCCCCCTGCTTTCCATAATTGATTACT
TCCAAATTAGATAGTCTAAATTCATTCATTTATTAGTCTAAGCTAATTAA
TTATTACAGTTGTATTTTTTATCCCGTGAAGAACAACTGCTTTCGAGCCA
ACCTTTTGTATCCCCCCTCCCCCACCCCCTTGGAATATTTTCGGGTGAAA
CTCCCTGCTTGCGTTCTCTAGGCCGAGGCCTTGGAAGGCGAGCTTAGCCG
AAGGGTTTCCGGAGCGGAGGCAGGCTTTAACAACGAGCGCGCGGCAATGA
AGGCAACGCTCGCCGGCGAGAGGCTTGCCTCGAAGGCTAAGCTGGAAGAG
GTACAGCAGTAATATTATACGAAGTACAACCATTGTTTTTTCCGTAGCAA
CCAAGGCATGTACAGGGTGGGGGGGAAAAGGCAGAGAGGCCCCTGTGACC
ACGGTTTTTGCTCGGGCAGGCGCGCTGAACGATGAACTCCTGTGTTGAGT
ATATGATACTGGACTGGAAAGATAAAGCGATGGATAGTCGATTTTGTGAT
TTTTTGTGCCTGTTCAGGCGTTCTTCTTTTCTTTTCTTGGGCGACTTTGA
GTGCTTCGGCGGGGGGGGGGGGGAGATCCGATCAACTCGATTATTTTTTC
TGTTTTTTTTTGTTTTTGTAGTCCTCTATAATACTCGTTGTATCGTATGT
GAAACGTTTCTGGATTTCAAGTAGTTCTAACGAATGCCCCGTCATATCTT
TCCAACAATACTGTGGCGTCATTCGTAGGCCGAACAGCAGCTGGTGCGGC
TTAGGGAGGTGGCCGCCGAGAAGCAGAAGGCGGACGAGATGACGAAGAAA
ATTAGCGCCGAAGCGGAGCAGGCGACGGCAGGTGATGCTCCTTGACTGGC
CTACAGTAGTACTACAGTGATGCTCATTGATTGGTCTACTTTTTTTGTTT
TTTATTTCGATTTTCTTGTCAACACTAAGTTCTCCCCCCTCCCCCCCCCC
CTGTGGCGAGGCCGAAGAGAGTAGAACTCACATAGTGGGAGAATGTGAAC
TGTACAATGAGGAACGGGATGTGCTGGAGGAGGAGATGAAGAAAATAGAC
GGGTGTGCCATGGAGAAGTTTGGTACACTAGATAGTCGTGAGAAAACGAT
CGCCATCTTAGAAGACAGACGGTGGCCGCAAAAGGCGAAACGAGAAGGGG
ATACGATAAGCAATTTCTTTTTATGTAAGATATGGCAAGGGGTGGCGCGA
TGGTGTACGAGACTAAGCGTTCGCCTCTGTTGGCGGAAGTTGGGAGTTCA
ATTCCCGCTGGCACTTTTCTGTGCCATTTTCCGTCGCGGAAAACGCGAGA
GCGTGAGTAAGCACAATTCGATGAAAGTCGACGAGGGAACAAGGTGCTGG
ACTCTTCTCGCGATAAAAATAATGTAGGCACGTACCGTAGTGGGAAGGCC
GGAGGAGCGCCTACTATGTGACCCCGGATCTGAGTCACGAAGAGAGACGG
AGCTAGAGAAATAATAGGGCGAAGATAATAAATGGGACGGAGAAAAAAAA
AAATGGCCTAAACGTAATGAGCGCCCAAATGTTGGAGGTGTCTCTATTAG
GAGTAGGAAGGGTTTGCCGTCTGGAAAGGGATGCGTGGTCAATGGTCAAA
TGACTAAGGCAAGCAACAAATGAGTACCCCCCCCCCCCCCCCCCCCGTCG
CCTGTCGCCGTGTCCCCAAGTATACAACGCCTCCGCGATGAAGCTACAAG
CCGAGGCGGCCTCTGTAAGGAAGCAGCTAGAGAAGGAGAAAGCTGCTGTC
GCGGCCGCTCAGGCCGAGGCTGGGTCCGTGAGGGCCGCCCAGAAAAAAGA
GAAGGCGGCGGCGCAGGCGCGACAGAAGACGCTCAACGAGGAGCTTGAGC
GCGAGCGGC
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Coding sequence (CDS) from alignment at D-herbacea_F_contig113:115050..119258-

>mRNA_D-herbacea_F_contig113.1003.1 ID=mRNA_D-herbacea_F_contig113.1003.1|Name=mRNA_D-herbacea_F_contig113.1003.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=1140bp|location=Sequence derived from alignment at D-herbacea_F_contig113:115050..119258- (Desmarestia herbacea DmunF female)
GGGTTTGCTACGCGGCGGAGTTTGCAAGGGTTCGCTAAGGGTGCTGGGAG
GAAGGTGGATGTCCGCGCAGGCGGAGGCGGGGAGATGTGGTCGCCGTTGG
ATATGGCAGTTCGTCCGTTGCAAGCGTTTGCTGGGGTAATACAGAAGCAG
GGGTTTGCTACGCGGCGGAGTTTGCAAGGGTTCGCTAAGGGTGCTGGGAG
GAAGGTGGATGTCCGCGCAGGCGGAGGCGGGGAGATGTGGTCGCCGTTGG
ATATGGCAGTTCGTCCGTTGCAAGCGTTTGCTGGGGTAATACAGAAGCAG
GCCGAGGCCTTGGAAGGCGAGCTTAGCCGAAGGGTTTCCGGAGCGGAGGC
AGGCTTTAACAACGAGCGCGCGGCAATGAAGGCAACGCTCGCCGGCGAGA
GGCTTGCCTCGAAGGCTAAGCTGGAAGAGGCCGAGGCCTTGGAAGGCGAG
CTTAGCCGAAGGGTTTCCGGAGCGGAGGCAGGCTTTAACAACGAGCGCGC
GGCAATGAAGGCAACGCTCGCCGGCGAGAGGCTTGCCTCGAAGGCTAAGC
TGGAAGAGGCCGAACAGCAGCTGGTGCGGCTTAGGGAGGTGGCCGCCGAG
AAGCAGAAGGCGGACGAGATGACGAAGAAAATTAGCGCCGAAGCGGAGCA
GGCGACGGCAGGCCGAACAGCAGCTGGTGCGGCTTAGGGAGGTGGCCGCC
GAGAAGCAGAAGGCGGACGAGATGACGAAGAAAATTAGCGCCGAAGCGGA
GCAGGCGACGGCAGTATACAACGCCTCCGCGATGAAGCTACAAGCCGAGG
CGGCCTCTGTAAGGAAGCAGCTAGAGAAGGAGAAAGCTGCTGTCGCGGCC
GCTCAGGCCGAGGCTGGGTCCGTGAGGGCCGCCCAGAAAAAAGAGAAGGC
GGCGGCGCAGGCGCGACAGAAGACGCTCAACGAGGAGCTTGAGCGCGAGC
GGTATACAACGCCTCCGCGATGAAGCTACAAGCCGAGGCGGCCTCTGTAA
GGAAGCAGCTAGAGAAGGAGAAAGCTGCTGTCGCGGCCGCTCAGGCCGAG
GCTGGGTCCGTGAGGGCCGCCCAGAAAAAAGAGAAGGCGGCGGCGCAGGC
GCGACAGAAGACGCTCAACGAGGAGCTTGAGCGCGAGCGG
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