mRNA_D-herbacea_F_contig113.1001.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig113.1001.1
Unique NamemRNA_D-herbacea_F_contig113.1001.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig113.1001.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig113contigD-herbacea_F_contig113:95462..96822 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size282
Cds size279
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927529.8398767-CDS-D-herbacea_F_contig113:95462..956451622927529.8398767-CDS-D-herbacea_F_contig113:95462..95645Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig113 95463..95645 -
1690790217.8491247-CDS-D-herbacea_F_contig113:95462..956451690790217.8491247-CDS-D-herbacea_F_contig113:95462..95645Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig113 95463..95645 -
1622927529.8535914-CDS-D-herbacea_F_contig113:96726..968221622927529.8535914-CDS-D-herbacea_F_contig113:96726..96822Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig113 96727..96822 -
1690790217.8674822-CDS-D-herbacea_F_contig113:96726..968221690790217.8674822-CDS-D-herbacea_F_contig113:96726..96822Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig113 96727..96822 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig113.1001.1prot_D-herbacea_F_contig113.1001.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig113 95463..96822 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig113.1001.1

>prot_D-herbacea_F_contig113.1001.1 ID=prot_D-herbacea_F_contig113.1001.1|Name=mRNA_D-herbacea_F_contig113.1001.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=93bp
VAPTSDILLTARESLSATAALFSGTPVKTNEERYQLLNEVDARENAEVVS
AIDDFLERSQDGVGPEPTSTPISEDAGNGTATGATTDADSESG
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mRNA from alignment at D-herbacea_F_contig113:95462..96822-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig113.1001.1 ID=mRNA_D-herbacea_F_contig113.1001.1|Name=mRNA_D-herbacea_F_contig113.1001.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=1361bp|location=Sequence derived from alignment at D-herbacea_F_contig113:95462..96822- (Desmarestia herbacea DmunF female)
GTGGCGCCAACGTCAGACATACTGCTGACGGCGAGGGAGAGCTTGTCCGC
GACGGCGGCGTTGTTTTCTGGGACGCCCGTTAAGACAAACGAGGAGGTAT
GTGCAGGGCGTGGCCGGAATTTTGCGTTGGCCGGTTTTTGTTTCGCTTGG
TGGTCGGGGGGGGGGAGGGGGCTCCGTCACCCCTTGAGACGCTTTGTCAA
AAGTTCTCGTATCGCATGGGCACGAGGCGCGATAGTCGATGACTATATGG
CATGCGCGGTCATCAACAACCCTCCCCCGACGAGGTCAATGGTCAAATAA
CTAAGGCAAACAAAAAATGAGCCCCTCCCCCCTCCCACATCCTAAATACA
TGAGCGTGGAGATCGACGTGCCTTGTAACATAACGCCTCCCTGGTGTATA
TGCACAACTTAGACAATCGGCGGGATGCCGCTGTGGACGTTTCTCTAGTT
TGTTTATCCTCCGGTGGTTGGGTAAAAATGAAGCTTAAATCTCACAAACT
TCCACAGTTTTCCTTATTAAGCTTTTCGAAGGTGCTCTTTTTTTAAAAAG
CTCTATTTTTTTTCTAAAGAAAGCTTTTTTACCGCTTTATAGTGCCGATT
AACACTCTTGTATTATGGTATTAATAAATACACAACGCTGCATTTTACCG
CGCGAGAGCCTCGGAGGCCATAGGCCTTGAAGATAGCCACCCGGAGAGGC
AACGTTGAACGTCGTCCCCCAGGGCTAGCGTAGGATTTTTCGAAGCCCAT
CTACTATAAAAGAAACCCAGACTACTACGCCTCGCCTGCCGGACTCGGTC
CAGTTGCGGTCCACTCTACCTACACTATCATACCCGTTCGAGCGTTGATC
CGTGTGGGTGACTCCACTTTTGGCGAAGACAGCGCAACGCAACGGCGATG
ACTCCGTAGCAGCCGACGGCATCGTGCTAATGCCAAACGAAACATGAGCC
CAGCGAAAAAAATAACATATCGTATACATACATATATACATAGACTACGT
ACATACGTTGAAGTATAGTACTTGTATATCGCTCCGTACTCCATACAGCA
GTACGCGACGGGCATTGACTGGGATTGCAAAGAGAGATACATCATAATGA
ACTGAAATTGCATGGAATATACCATAATAATACTACTGTATTTATAATAC
CGGTACACGCGCCGTCTTCTCTGGCAGCGCTATCAGTTGCTGAACGAGGT
CGATGCCCGAGAGAACGCGGAGGTGGTTTCGGCTATCGATGACTTCTTGG
AACGATCGCAAGACGGTGTGGGACCGGAACCCACGTCGACGCCAATCTCT
GAAGACGCCGGTAACGGAACAGCAACGGGTGCAACGACGGACGCGGACTC
GGAGAGTGGGG
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Coding sequence (CDS) from alignment at D-herbacea_F_contig113:95462..96822-

>mRNA_D-herbacea_F_contig113.1001.1 ID=mRNA_D-herbacea_F_contig113.1001.1|Name=mRNA_D-herbacea_F_contig113.1001.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=558bp|location=Sequence derived from alignment at D-herbacea_F_contig113:95462..96822- (Desmarestia herbacea DmunF female)
GTGGCGCCAACGTCAGACATACTGCTGACGGCGAGGGAGAGCTTGTCCGC
GACGGCGGCGTTGTTTTCTGGGACGCCCGTTAAGACAAACGAGGAGGTGG
CGCCAACGTCAGACATACTGCTGACGGCGAGGGAGAGCTTGTCCGCGACG
GCGGCGTTGTTTTCTGGGACGCCCGTTAAGACAAACGAGGAGCGCTATCA
GTTGCTGAACGAGGTCGATGCCCGAGAGAACGCGGAGGTGGTTTCGGCTA
TCGATGACTTCTTGGAACGATCGCAAGACGGTGTGGGACCGGAACCCACG
TCGACGCCAATCTCTGAAGACGCCGGTAACGGAACAGCAACGGGTGCAAC
GACGGACGCGGACTCGGAGAGTGGGCGCTATCAGTTGCTGAACGAGGTCG
ATGCCCGAGAGAACGCGGAGGTGGTTTCGGCTATCGATGACTTCTTGGAA
CGATCGCAAGACGGTGTGGGACCGGAACCCACGTCGACGCCAATCTCTGA
AGACGCCGGTAACGGAACAGCAACGGGTGCAACGACGGACGCGGACTCGG
AGAGTGGG
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