mRNA_D-herbacea_F_contig1126.996.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig1126.996.1
Unique NamemRNA_D-herbacea_F_contig1126.996.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig1126.996.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig1126contigD-herbacea_F_contig1126:39540..43024 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size629
Cds size627
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927529.3486183-CDS-D-herbacea_F_contig1126:39539..398551622927529.3486183-CDS-D-herbacea_F_contig1126:39539..39855Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1126 39540..39855 +
1690790217.5566895-CDS-D-herbacea_F_contig1126:39539..398551690790217.5566895-CDS-D-herbacea_F_contig1126:39539..39855Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1126 39540..39855 +
1622927529.3635294-CDS-D-herbacea_F_contig1126:42713..430241622927529.3635294-CDS-D-herbacea_F_contig1126:42713..43024Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1126 42714..43024 +
1690790217.5648685-CDS-D-herbacea_F_contig1126:42713..430241690790217.5648685-CDS-D-herbacea_F_contig1126:42713..43024Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1126 42714..43024 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig1126.996.1prot_D-herbacea_F_contig1126.996.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig1126 39540..43024 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig1126.996.1

>prot_D-herbacea_F_contig1126.996.1 ID=prot_D-herbacea_F_contig1126.996.1|Name=mRNA_D-herbacea_F_contig1126.996.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=209bp
PPPPYTATPLRDNNGGRGGVSVSSRDASKSAIPLEPCAQQALSLLSEMWD
TRGGVTPTDESYGACINACGNSGRHWGQVMALLREVTDREGVTPGVRSYT
AAIKAGRNGYRWRETLALLRQMRESEEGDSNGTRMMTEQEDTSVFNAAIT
ACKNGGDRRHVMWLLEDMGKLGVTRDVTSYNEAIRALRHRRARRPRPKRE
AAGADTFL*
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mRNA from alignment at D-herbacea_F_contig1126:39540..43024+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig1126.996.1 ID=mRNA_D-herbacea_F_contig1126.996.1|Name=mRNA_D-herbacea_F_contig1126.996.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=3485bp|location=Sequence derived from alignment at D-herbacea_F_contig1126:39540..43024+ (Desmarestia herbacea DmunF female)
CCACCACCACCGTACACCGCCACACCTTTGCGAGACAATAATGGTGGTCG
TGGTGGTGTTTCCGTATCATCGCGCGACGCTTCGAAATCGGCGATACCGC
TTGAACCTTGTGCGCAGCAGGCGCTGTCTCTTTTGAGCGAGATGTGGGAC
ACTAGGGGCGGGGTCACCCCGACCGACGAGAGCTACGGTGCCTGCATCAA
CGCCTGTGGGAACAGTGGGCGCCATTGGGGCCAAGTAATGGCACTATTGA
GGGAGGTCACTGATAGGGAGGGTGTCACACCCGGTGTCCGAAGCTACACC
GCCGCTATCAAGGCAGGTACGTACACATATCGGTGTTGGGGCTATCATTG
CCCCTTATTTTATGCCTTCTTCGACACGACCTGTAGGATGTTCGTTTTAC
TGTACAATTCCGAACTGCTGAACAATCCACGTCGGTAATATTGTCATACT
ACCGACGTAGGGTCTAATACTACTACCGACGTGGACTGTTCAGCAGGTCG
TATTCTTTCTAGAACGAATCCCAACCCTAACGACAGCACTATGATATCAT
GGGGTGAATAGAACCGTGCTACGGTAGGGGGGTCCCCCCTCATTTCACTT
TCGGGTGGAGGTCGCTCGCCCGAGCGACTTCGTATCTCACTCAATATAGG
ACATTTAAACATATGTTGTTCGCGCCGTGCACCAAAAAAACATGTGGTGG
TTAACGAGAAATGAAATTGCCCAAAAGTTGACAACCGCGAAGATATGGGG
TAGTCACTCTCAAGAGTGAGCCTGAGCCGCTGAAATCAAGGTCCAAGATA
TGCCCCCCTCTATCGTAGCACGGGTGAAAACCCACCTAAAGATCCTGTGG
AACAAGGCGCAGGGGGGCCGCTGTGTCGTGGAAAGTGCCCCCCCCCCTCG
TGCTGGGATAGAGGGATTCGAGCGTTTTTTTTTAGCCGCGACGAACTCGC
GCGACTTTCTGTCTTCTGAATCACACCACTCGTCGTCGTCGTGAGTATAC
TCTTTTTCATGACGTCCAAGCTTGATGAAACCAGCTACTGACGCGTTAGA
GAGAGCCGAGAGAGCAACCATCGCATGGTGTGTATGTGTTTTATCCCTTG
CACTAGTACTACTGTATCGCTTTGTGCAAGCCTGCCATGAACCGGCAGTG
TACAACAAGCGTTCTGCCTTGCGCTGCACCGCGAAGCACCAGCAGCAAGG
GTTGTGACTAATCGTGCACGTTCGGTTGACGACAACGGCCAGACAGCCTC
TTGTAGAATGCAGGAGGCATGCTACGGTAGTGGGGGCACCATTGTTTTCT
GAGGCTCCTCCGCTCTACATCTCACCCAAAATGCATCTTTGCCAAAAATC
ATTCGAGACCCATACTACGGTAGAGGGCTCCAGATTTTGGGTGGATTTTG
CGAAGGTCTTCATATGGTGTGCAATTCGATTTCACGATATATAGGCACCG
CCGTGGGATTATCAGCGTGGACAAAATATATTACGTGTAACTATCGTTTT
TGGCGTGGTATACAGATTCGCTAGCGCGAGTCACCTAAACCCACCCGGAA
GTGACGACAGGGGTACCCACCCCCACCGTAGCGCAGCTCTCGGACAGCCC
TTGGGCACCTGATGAGTATTTCCATGGGCAATATTCCTAGTTATTTCACG
AATATAAGTTCATAACACAAGCACATTTGATCCACAGATATTGGGTATTT
CCTCAGTTGAGGAGCCCCATCAGTCAGAATTGTTTGGACAAAAAAGTACC
CCCGCTATGGTAGCATGGCTCGTAGGTGACGATGGTAGTACCCAAGGGCA
GACAAGAATTCCAGTGGACACAGCCCCTCCCCTCCCATCTCAGACAAATC
GCGCCATTATTCAATGCCGACTGTTGTGCGTTTCATGTGTGTTTCGTTTG
CAGTTTTTGTCACCGTCCTGTTGGACTTGAGTCAATCGGTAGCTTTTCAT
TGAAACCTGCTGTACGTTTGTTCAGCTTTTTTAGGTTGTATGTACATCCA
CGATGCTACTATTTCTACTACTACTCGTACTGTGTATTTGTTCTTCACTA
CTGCCTGCAAAGCTGCTGTTTTACTTGTTTTGCTGGGAGCATACGCGTAC
TACCCCGTATTACATAGTGGGTTGTGGGAACTGTCTTGGAGTGGAATAGT
GTGTGATCTCACTTTTTGACACGAGGAGTTTCGTGAGCATACAACAACGA
TGCAGGTGATACCCCAAACGACATCAAGCACTCATCGTTACGTGCCTTGA
GGCGCGCGGAGTTATTAGTGAGTGCACGCGGAGACTCAATATGTCCTTCG
CGACACTCGGATGACAGTCACACCTGCTTAGCGTACCACATCTGATGACC
CGTTTCGCTCCATAAGCCCGCGGCAAATACTATATATGCGTTAGCGTCGC
AAGGCGATGCCGCGCAGGCGGCTGGTATATTCCCAGCCTCCTTGCGAAAC
GCAGTCTGGGTATCTCGCCAACCCAGCATATCCTTGCGTCTCGGCATCAA
CCGTTGTCGGAATGCGAGATTTAATGGTCATTAGGCACATGGTTGCCATG
ACCCCTCCCCCCGTGGTCAATGGTCAACTGACTAAGGAATGCCAAGCGCG
AGTAACCCCCCCCCGCAGTGTTAGTTCGAAGCTGCCATCCATATGCAAGA
AAGTACGCACAAGGTGCTGAGGTCCGCCTCAAAAGTGGTTCTTAGTAGGA
TGCAGCTCACCCTTCATGCGGATCGCCGAACACCTCACGGCGCTTCGCGC
TTGGTGTACGCGATGTCTGCCTGGCCGGTGAAAACCCGACGTGCTCCGTC
CTGGCATAGTAGGGATGCGAGGGTCTATGGTCATACGACTACGGCAGTGC
ATGAAATGCGTACACCCCCTCTCAGAAGTCCTAGAAAATGGATGGTAGAC
GCAAAATGCGAAACAGGAAGGGATTAAGAGATACTTTTTTTTATGTAAGT
TATGGCACAAAAACGTAAAGAGCGCTCAAATGTCGTAGGTGTCTCTGTTG
GGAGTAGAAACGATGCTCCGTCTCGAAAGGGATTCGTGGTCAATGGTCAA
ACGACCGAGGCAAACACGAAATGAGTACACCCCCCGCCCCCTCCGGGAGA
CTTGCGTCCTTAGATACCCCCCGACCACCTCATGGACTTCTTCCACCATA
CATCTCGCCGAAAACAAATCGCAGGCAGAAACGGGTATCGTTGGCGAGAA
ACTCTGGCCCTGTTGAGGCAAATGCGAGAAAGCGAGGAAGGGGATAGCAA
CGGTACGCGGATGATGACTGAACAAGAAGACACGTCCGTCTTCAATGCGG
CAATAACGGCCTGCAAGAATGGAGGCGACCGGAGACACGTAATGTGGCTG
CTGGAGGACATGGGGAAGCTAGGGGTAACGCGCGACGTGACGAGCTACAA
CGAGGCTATTCGAGCGTTACGGCATCGTCGAGCGCGGCGACCGCGACCAA
AACGCGAAGCTGCGGGGGCGGACACGTTTTTGTGA
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Coding sequence (CDS) from alignment at D-herbacea_F_contig1126:39540..43024+

>mRNA_D-herbacea_F_contig1126.996.1 ID=mRNA_D-herbacea_F_contig1126.996.1|Name=mRNA_D-herbacea_F_contig1126.996.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=1254bp|location=Sequence derived from alignment at D-herbacea_F_contig1126:39540..43024+ (Desmarestia herbacea DmunF female)
CCACCACCACCGTACACCGCCACACCTTTGCGAGACAATAATGGTGGTCG
TGGTGGTGTTTCCGTATCATCGCGCGACGCTTCGAAATCGGCGATACCGC
TTGAACCTTGTGCGCAGCAGGCGCTGTCTCTTTTGAGCGAGATGTGGGAC
ACTAGGGGCGGGGTCACCCCGACCGACGAGAGCTACGGTGCCTGCATCAA
CGCCTGTGGGAACAGTGGGCGCCATTGGGGCCAAGTAATGGCACTATTGA
GGGAGGTCACTGATAGGGAGGGTGTCACACCCGGTGTCCGAAGCTACACC
GCCGCTATCAAGGCAGCCACCACCACCGTACACCGCCACACCTTTGCGAG
ACAATAATGGTGGTCGTGGTGGTGTTTCCGTATCATCGCGCGACGCTTCG
AAATCGGCGATACCGCTTGAACCTTGTGCGCAGCAGGCGCTGTCTCTTTT
GAGCGAGATGTGGGACACTAGGGGCGGGGTCACCCCGACCGACGAGAGCT
ACGGTGCCTGCATCAACGCCTGTGGGAACAGTGGGCGCCATTGGGGCCAA
GTAATGGCACTATTGAGGGAGGTCACTGATAGGGAGGGTGTCACACCCGG
TGTCCGAAGCTACACCGCCGCTATCAAGGCAGGCAGAAACGGGTATCGTT
GGCGAGAAACTCTGGCCCTGTTGAGGCAAATGCGAGAAAGCGAGGAAGGG
GATAGCAACGGTACGCGGATGATGACTGAACAAGAAGACACGTCCGTCTT
CAATGCGGCAATAACGGCCTGCAAGAATGGAGGCGACCGGAGACACGTAA
TGTGGCTGCTGGAGGACATGGGGAAGCTAGGGGTAACGCGCGACGTGACG
AGCTACAACGAGGCTATTCGAGCGTTACGGCATCGTCGAGCGCGGCGACC
GCGACCAAAACGCGAAGCTGCGGGGGCGGACACGTTTTTGTGAGCAGAAA
CGGGTATCGTTGGCGAGAAACTCTGGCCCTGTTGAGGCAAATGCGAGAAA
GCGAGGAAGGGGATAGCAACGGTACGCGGATGATGACTGAACAAGAAGAC
ACGTCCGTCTTCAATGCGGCAATAACGGCCTGCAAGAATGGAGGCGACCG
GAGACACGTAATGTGGCTGCTGGAGGACATGGGGAAGCTAGGGGTAACGC
GCGACGTGACGAGCTACAACGAGGCTATTCGAGCGTTACGGCATCGTCGA
GCGCGGCGACCGCGACCAAAACGCGAAGCTGCGGGGGCGGACACGTTTTT
GTGA
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