mRNA_D-herbacea_F_contig1126.994.1 (mRNA) Desmarestia herbacea DmunF female
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Overview
Homology
BLAST of mRNA_D-herbacea_F_contig1126.994.1 vs. uniprot
Match: A0A6H5L2P5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2P5_9PHAE) HSP 1 Score: 409 bits (1051), Expect = 6.810e-137 Identity = 199/238 (83.61%), Postives = 220/238 (92.44%), Query Frame = 1
Query: 1 QVPVPLNSDDPLFCTVRDLHVEQLMPLLQGKAKHIRESYNRFRANRDQSITEIHEFVKKIPGLKEDYKSLNLHINIAGLVMDGSGSAEFRRRWQAERAMLEGDDCYEVIEEMISMQEPPLRVLRLLCLQSITDAGIKTSKYDFLKREIVQTYGYQYLFTLNNLEAVGLLKKRDKGW-VGAADSGSPWPSLRRALKLINDAVDVRAPDDIAYVSSGYAPLSVRLVQACVRPGWALASEA 711
QVPVPLNSDDPLFC VRD+HVEQLMP LQ KAK+IRESYN+FRANRDQSITEIHEFVKKIPGLKEDYKSLNLHINIA L+M+GSG+ +FR+RWQ ERA+LEG+DC EVIEEMISMQEP +RV+RL+CLQS+TDAGIK SKYDFLKRE+VQTYGY YLFTLNNLEAVGLLKKR+K W VGA D+GSPWP LRR+L+L+NDAVDVR+PDDIAYVSSGYAPLSVRLVQA VRPGW A EA
Sbjct: 333 QVPVPLNSDDPLFCKVRDVHVEQLMPFLQDKAKNIRESYNQFRANRDQSITEIHEFVKKIPGLKEDYKSLNLHINIAELIMEGSGAPDFRKRWQTERAVLEGEDCSEVIEEMISMQEPAMRVIRLMCLQSMTDAGIKASKYDFLKREVVQTYGYPYLFTLNNLEAVGLLKKREKVWGVGAVDTGSPWPPLRRSLRLVNDAVDVRSPDDIAYVSSGYAPLSVRLVQASVRPGWTTAGEA 570
BLAST of mRNA_D-herbacea_F_contig1126.994.1 vs. uniprot
Match: D7G0J5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0J5_ECTSI) HSP 1 Score: 373 bits (957), Expect = 1.260e-124 Identity = 179/215 (83.26%), Postives = 202/215 (93.95%), Query Frame = 1
Query: 1 QVPVPLNSDDPLFCTVRDLHVEQLMPLLQGKAKHIRESYNRFRANRDQSITEIHEFVKKIPGLKEDYKSLNLHINIAGLVMDGSGSAEFRRRWQAERAMLEGDDCYEVIEEMISMQEPPLRVLRLLCLQSITDAGIKTSKYDFLKREIVQTYGYQYLFTLNNLEAVGLLKKRDKGW-VGAADSGSPWPSLRRALKLINDAVDVRAPDDIAYVSSG 642
QVPVP+NSDDPLFC VRD+HVEQLMP LQ KAK+IRESYN+FRANRDQSITEIHEFVKKIPGLKEDYKSLNLHINIA L+M+GSG+ +FR+RWQ ERA+LEG+DC EVIEEMISMQEP +RV+RL+CLQS+TDAGIK SKYDFLKRE+VQTYGY+YLFTLNNLEAV LLKKR+K W VGA D+GSPWPSLRR+L+L+NDAVDVR+PDDIAYVSSG
Sbjct: 331 QVPVPMNSDDPLFCKVRDVHVEQLMPFLQDKAKNIRESYNQFRANRDQSITEIHEFVKKIPGLKEDYKSLNLHINIAELIMEGSGAPDFRKRWQTERAVLEGEDCSEVIEEMISMQEPAMRVIRLMCLQSMTDAGIKASKYDFLKREVVQTYGYRYLFTLNNLEAVSLLKKREKVWGVGAVDTGSPWPSLRRSLRLVNDAVDVRSPDDIAYVSSG 545
BLAST of mRNA_D-herbacea_F_contig1126.994.1 vs. uniprot
Match: A0A7S2DGE7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DGE7_9STRA) HSP 1 Score: 280 bits (717), Expect = 3.020e-87 Identity = 134/228 (58.77%), Postives = 175/228 (76.75%), Query Frame = 1
Query: 10 VPLNSDDPLFCTVRDLHVEQLMPLLQGKAKHIRESYNRFRANRDQSITEIHEFVKKIPGLKEDYKSLNLHINIAGLVMDGSGSAEFRRRWQAERAMLEGDDCYEVIEEMISMQEPPLRVLRLLCLQSITDAGIKTSKYDFLKREIVQTYGYQYLFTLNNLEAVGLLKKRDKGWVGAADSGSPWPSLRRALKLINDAVDVRAPDDIAYVSSGYAPLSVRLVQACVRPGW 693
+ LNS+D + +RDL++EQL P L KAK IR Y+ FR+N+D ++TEIH+FVK+IPGL YKSLN HIN+ + + A FR RW ERA+LEGD C +V+EEMI+MQEP L VLRL+CLQS+T+ GI+T+K+DF++RE++QTYGY+ LFTLNNLE VG++++R+ W+ DSG W ++RRAL LIN+ V PDDIAYVSSGYAPLSVRLVQ V+PGW
Sbjct: 313 IALNSNDKCYVEIRDLNIEQLGPYLGQKAKEIRGMYDGFRSNKDATMTEIHDFVKQIPGLTTKYKSLNQHINLTEEIKRTTDGAAFRLRWNTERALLEGDSCLDVMEEMIAMQEPQLSVLRLVCLQSLTNGGIRTAKFDFIRRELIQTYGYELLFTLNNLEKVGMIRRREMQWM---DSGPTWSTVRRALALINERVSAVRPDDIAYVSSGYAPLSVRLVQIAVKPGW 537
BLAST of mRNA_D-herbacea_F_contig1126.994.1 vs. uniprot
Match: A0A1Z9QCA2_9BACT (Uncharacterized protein n=1 Tax=Phycisphaeraceae bacterium TMED231 TaxID=1986831 RepID=A0A1Z9QCA2_9BACT) HSP 1 Score: 272 bits (696), Expect = 2.200e-84 Identity = 135/237 (56.96%), Postives = 177/237 (74.68%), Query Frame = 1
Query: 1 QVPVPLNSDDPLFCTVRDLHVEQLMPLLQGKAKHIRESYNRFRANRDQSITEIHEFVKKIPGLKEDYKSLNLHINIAGLVMDGSGSAEFRRRWQAERAMLEGDDCYEVIEEMISMQEPPLRVLRLLCLQSITDAGIKTSKYDFLKREIVQTYGYQYLFTLNNLEAVGLLKKRDKGWVGAADSGSPWPSLRRALKLINDAVDVRAPDDIAYVSSGYAPLSVRLVQACVRPGWALASEA 711
+V V LNS+ L+ VRDL+VE+L L KAK IR Y+ FRAN+D SITEIH+FVK+IPGL ++YKSLN HINI L+ + + FR+RW ER +LEGD CY+++EEMI+MQ+P VLRLLCLQS+T+ GIK +KYD L++ IVQTYG+ +F LN LE +G+L++R+ W+ DS S W ++R+AL LIN+ +DV APDDI+YVSSGYAPLSVRLV+ + GWA S A
Sbjct: 293 KVSVALNSNXQLYAEVRDLNVEKLGSFLGQKAKEIRGKYDTFRANKDASITEIHDFVKRIPGLTQNYKSLNQHINITELIKRTTDGSLFRQRWNTERTLLEGDACYDLLEEMIAMQQPANDVLRLLCLQSLTNGGIKYNKYDSLRKAIVQTYGFHMIFALNALEKIGMLRRREMAWM---DSTSSWTTIRKALGLINENIDVHAPDDISYVSSGYAPLSVRLVEVAAKQGWASQSAA 526
BLAST of mRNA_D-herbacea_F_contig1126.994.1 vs. uniprot
Match: A0A7S2WUT3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WUT3_9STRA) HSP 1 Score: 272 bits (696), Expect = 3.680e-84 Identity = 138/230 (60.00%), Postives = 171/230 (74.35%), Query Frame = 1
Query: 4 VPVPLNSDDPLFCTVRDLHVEQLMPLLQGKAKHIRESYNRFRANRDQSITEIHEFVKKIPGLKEDYKSLNLHINIAGLVMDGSGSAEFRRRWQAERAMLEGDDCYEVIEEMISMQEPPLRVLRLLCLQSITDAGIKTSKYDFLKREIVQTYGYQYLFTLNNLEAVGLLKKRDKGWVGAADSGSPWPSLRRALKLINDAVDVRAPDDIAYVSSGYAPLSVRLVQACVRPGW 693
V V LNS+D LF VR L++E+L L KAK IR SY+ FRAN+D +ITEIH+FVK+IPGLKE Y SLN HINI ++ + S FR RW ERA+LE + C ++IEE+I MQEP VLRL CLQS+T GI+ KY+ LKREI+QTYG++ FTLNNLE VGL+K+RD ++ +SGSPW SL R L+LI++ VDV AP DI+YVSSGYAPLSVRLVQ + PGW
Sbjct: 317 VSVALNSNDKLFTEVRGLNIERLGTYLGLKAKEIRGSYDTFRANKDATITEIHDFVKQIPGLKEKYTSLNQHINITEIIKRTTDSVRFRHRWNIERALLEMESCLDLIEELICMQEPVTLVLRLFCLQSLTSGGIRQQKYEHLKREIIQTYGFELAFTLNNLERVGLIKRRDMQFM---ESGSPWGSLSRTLRLIDERVDVAAPKDISYVSSGYAPLSVRLVQGAIDPGW 543
BLAST of mRNA_D-herbacea_F_contig1126.994.1 vs. uniprot
Match: A0A7S4DLN4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DLN4_HETAK) HSP 1 Score: 258 bits (659), Expect = 6.840e-84 Identity = 133/226 (58.85%), Postives = 167/226 (73.89%), Query Frame = 1
Query: 16 LNSDDPLFCTVRDLHVEQLMPLLQGKAKHIRESYNRFRANR-DQSITEIHEFVKKIPGLKEDYKSLNLHINIAGLVMDGSGSAEFRRRWQAERAMLEGDDCYEVIEEMISMQEPPLRVLRLLCLQSITDAGIKTSKYDFLKREIVQTYGYQYLFTLNNLEAVGLLKKRDKGWVGAADSGSPWPSLRRALKLINDAVDVRAPDDIAYVSSGYAPLSVRLVQACVRPG 690
LNS DPLF +RDL+VEQL P LQG+AK IR+ Y FRANR D +I ++H FVKKIPGL + YK L+ HIN+A +V + + FRRRW AERA+LEG+ IE+MI EPPL+VLR+LCLQSIT G+ KY+ +KRE +QTYGY+Y+F+L NLE +G+LKK++ W G G+ W +L+R LKL NDAVDV P+DIAYVSSGYAPLSVRLV+A G
Sbjct: 3 LNSGDPLFAAIRDLNVEQLGPYLQGRAKDIRQRYEEFRANRKDATINDLHSFVKKIPGLTQTYKVLSQHINLAEVVQRATDAPPFRRRWVAERALLEGERRANSIEQMIWEDEPPLQVLRMLCLQSITGDGVP--KYEAIKREFIQTYGYEYMFSLANLERMGMLKKKES-WGGGDSGGARWNTLKRTLKLTNDAVDVLNPNDIAYVSSGYAPLSVRLVEAAAGAG 225
BLAST of mRNA_D-herbacea_F_contig1126.994.1 vs. uniprot
Match: A0A835YTK2_9STRA (Sec1-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTK2_9STRA) HSP 1 Score: 256 bits (655), Expect = 4.940e-78 Identity = 134/242 (55.37%), Postives = 167/242 (69.01%), Query Frame = 1
Query: 1 QVPVPLNSDDPLFCTVRDLHVEQLMPLLQGKAKHIRESYNRFRANRDQSITEIHEFVKKIPGLKEDYKSLNLHINIAGLVMDGSGSAEFRRRWQAERAMLEGDDCYEVIEEMISMQEPPLRVLRLLCLQSITDAGIKTSKYDFLKREIVQTYGYQYLFTLNNLEAVGLLKKRDKGWVGAADSGSPWPSLRRALKLINDAVDVRAP----------DDIAYVSSGYAPLSVRLVQACVRPGWA 696
QV VPLNS DPL+ RDL VE L P LQGKAK IRESY FRAN+DQSITEIH+FVK+IPGL + YKSLN HI+IA LV + A FR+RWQ ER+MLEG+ C++ IE++I Q P + VLRLLCLQSIT GI + ++D L+R+IVQTYGY+ + L LEA GLLK+ GWV + +PW +LRRAL+L++D D++YV +GYAPLS R+VQA G A
Sbjct: 311 QVAVPLNSSDPLYAATRDLSVENLGPYLQGKAKDIRESYAAFRANKDQSITEIHDFVKRIPGLTQTYKSLNQHIHIAELVKRTTDGAPFRQRWQTERSMLEGEACFDAIEDLICEQAPLVSVLRLLCLQSITRGGIPSGRFDALRRDIVQTYGYETMHALAALEAAGLLKRGGLGWVVDTAAAAPWAALRRALRLLSDVTPAXXXXXXXXXXXXXQDMSYVCAGYAPLSARVVQAMAGGGGA 552
BLAST of mRNA_D-herbacea_F_contig1126.994.1 vs. uniprot
Match: A0A4D9D766_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D766_9STRA) HSP 1 Score: 246 bits (628), Expect = 2.820e-72 Identity = 130/249 (52.21%), Postives = 170/249 (68.27%), Query Frame = 1
Query: 4 VPVPLNSDDPLFCTVRDLHVEQLMPLLQGKAKHIRESYNRFRAN-RDQSITEIHEFVKKIPGLKEDYKSLNLHINIAGLVMDGSGSAEFRRRWQAERAMLEGDDCYEVIEEMISMQEPPLRVLRLLCLQSITDAGIKTSKYDFLKREIVQTYGYQYLFTLNNLEAVGLLKKRDK-------GWVGAAD------SGSPWPSLRRALKLINDAVDVRAPDDIAYVSSGYAPLSVRLVQACVRPGWALASE 708
V V LNS+D L+ +RDLH+E L L KA +R++Y R + RD S+ EIH+ VK IP L++ YK LNLHINIA + +G F++RWQ ER+MLEG+ YE +EEM++ EP +VLRLL LQS+T GIK SKY+ LKREI+Q+YGY+YLF L N+E GLL+K D G +GA+ SG+ W SLRR L+L+ + V+ + PDDIAYVSSGYAPLSVRL+Q +PGWA S+
Sbjct: 554 VSVALNSNDSLYAEIRDLHLEVLGLQLNEKAMEMRQTYARVKEETRDGSLNEIHDVVKSIPALQQKYKGLNLHINIAEFLKPTTGHVRFQQRWQLERSMLEGETRYEDVEEMVAAYEPVDQVLRLLALQSLTAGGIKASKYELLKREIIQSYGYEYLFALTNMEQAGLLRKADLQLSNVMFGSIGASSFSSTGGSGNAWASLRRLLRLVKENVNTQVPDDIAYVSSGYAPLSVRLLQLIQKPGWASCSD 802
BLAST of mRNA_D-herbacea_F_contig1126.994.1 vs. uniprot
Match: A0A7S4QZE6_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QZE6_9STRA) HSP 1 Score: 232 bits (592), Expect = 8.080e-72 Identity = 115/235 (48.94%), Postives = 164/235 (69.79%), Query Frame = 1
Query: 10 VPLNSDDPLFCTVRDLHVEQLMPLLQGKAKHIRESYNRF-RANRDQSITEIHEFVKKIPGLKEDYKSLNLHINIAGLVMDGSGSAEFRRRWQAERAMLEGDDCYEVIEEMISMQEPPLRVLRLLCLQSITDAGIKTSKYDFLKREIVQTYGYQYLFTLNNLEAVGLLKKRDKGWVGAADSGSPWPSLRRALKLINDAVDVRAPDDIAYVSSGYAPLSVRLVQACVRPGWALASEA 711
+PLN D L+ VRD HVE LQG+AK ++ES++ F + + + EIH+FVK+IP ++ +SL HI++A LV + + FR+RWQ ER+MLE + CY+++E+ I+ QEPP ++LRLLCLQS+T GIK++K+D L+RE+VQTYGY+YLF LNNLE L +++D W+ D+ S + +LR+ L LIN V+ PDD++YVSSGYAPL+ RLVQ + GW EA
Sbjct: 42 LPLNDIDTLYSEVRDQHVETFGSFLQGQAKALKESHSAFTNKEKKKDLNEIHKFVKQIPIFTQNLRSLTTHIHLAELVKQTTEESSFRQRWQTERSMLESEQCYDMLEDSIACQEPPYQLLRLLCLQSLTSGGIKSAKFDSLRREVVQTYGYEYLFVLNNLEKAKLFRRKDTSWM---DTASTFTNLRKQLALINAEVNTADPDDVSYVSSGYAPLTARLVQTATQ-GWTGKDEA 272
BLAST of mRNA_D-herbacea_F_contig1126.994.1 vs. uniprot
Match: A0A7S4R0Q7_9STRA (Hypothetical protein n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4R0Q7_9STRA) HSP 1 Score: 232 bits (592), Expect = 7.780e-69 Identity = 115/235 (48.94%), Postives = 164/235 (69.79%), Query Frame = 1
Query: 10 VPLNSDDPLFCTVRDLHVEQLMPLLQGKAKHIRESYNRF-RANRDQSITEIHEFVKKIPGLKEDYKSLNLHINIAGLVMDGSGSAEFRRRWQAERAMLEGDDCYEVIEEMISMQEPPLRVLRLLCLQSITDAGIKTSKYDFLKREIVQTYGYQYLFTLNNLEAVGLLKKRDKGWVGAADSGSPWPSLRRALKLINDAVDVRAPDDIAYVSSGYAPLSVRLVQACVRPGWALASEA 711
+PLN D L+ VRD HVE LQG+AK ++ES++ F + + + EIH+FVK+IP ++ +SL HI++A LV + + FR+RWQ ER+MLE + CY+++E+ I+ QEPP ++LRLLCLQS+T GIK++K+D L+RE+VQTYGY+YLF LNNLE L +++D W+ D+ S + +LR+ L LIN V+ PDD++YVSSGYAPL+ RLVQ + GW EA
Sbjct: 333 LPLNDIDTLYSEVRDQHVETFGSFLQGQAKALKESHSAFTNKEKKKDLNEIHKFVKQIPIFTQNLRSLTTHIHLAELVKQTTEESSFRQRWQTERSMLESEQCYDMLEDSIACQEPPYQLLRLLCLQSLTSGGIKSAKFDSLRREVVQTYGYEYLFVLNNLEKAKLFRRKDTSWM---DTASTFTNLRKQLALINAEVNTADPDDVSYVSSGYAPLTARLVQTATQ-GWTGKDEA 563 The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig1126.994.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-herbacea_F_contig1126.994.1 >prot_D-herbacea_F_contig1126.994.1 ID=prot_D-herbacea_F_contig1126.994.1|Name=mRNA_D-herbacea_F_contig1126.994.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=237bp QVPVPLNSDDPLFCTVRDLHVEQLMPLLQGKAKHIRESYNRFRANRDQSIback to top mRNA from alignment at D-herbacea_F_contig1126:1072..10204- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-herbacea_F_contig1126.994.1 ID=mRNA_D-herbacea_F_contig1126.994.1|Name=mRNA_D-herbacea_F_contig1126.994.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=9133bp|location=Sequence derived from alignment at D-herbacea_F_contig1126:1072..10204- (Desmarestia herbacea DmunF female)back to top Coding sequence (CDS) from alignment at D-herbacea_F_contig1126:1072..10204- >mRNA_D-herbacea_F_contig1126.994.1 ID=mRNA_D-herbacea_F_contig1126.994.1|Name=mRNA_D-herbacea_F_contig1126.994.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=1422bp|location=Sequence derived from alignment at D-herbacea_F_contig1126:1072..10204- (Desmarestia herbacea DmunF female)back to top |