mRNA_D-herbacea_F_contig112.987.1 (mRNA) Desmarestia herbacea DmunF female
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Overview
Homology
BLAST of mRNA_D-herbacea_F_contig112.987.1 vs. uniprot
Match: D8LC10_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LC10_ECTSI) HSP 1 Score: 393 bits (1010), Expect = 1.170e-126 Identity = 224/297 (75.42%), Postives = 245/297 (82.49%), Query Frame = 1
Query: 115 MVRASAFPLTLVALASKSCMGFVPAPVVTRV--APSSTTSMSLKGP-GKSSSPIGKAAGIVSKVLFSRPGGVKFGNNGGNGGMMXXXXXXXXXXXXXXXXFSADDGE-TDAVAMLGVLASIKGSASNVWDSYNSALAQNPIAVKACTSLVGFSIGDFLAQKGTSKDKFSYERLARMAAFGFLFHGTISHFFYNALDAALPGTAAITVAQKVVIDQVFWAPIFTLIFFTWIGVTSGSSPNEIVTKIKNDLISGVMGSWTVWPLAHTINFRFVPTEQRLLYINSIQIFYNVFLSIIGSK 993
MVR SA P LVAL S SC FV P+VTRV APS TTSMSLKGP G+SSSPI KAA +V K LF RPGGVK GN XXXXXXXXXXX + ++G DA+AMLGVLA++K A WD+YNSALA PI VKACTS VGFSIGDFLAQKGTSK+ FSY RLARMAAFGFLFHGTISHFFYNALD+ALPGTAA+TV QKV+IDQVFWAPIFTLIFFTWIGVTSG+SP+EIV K+K+DL+ GV+GSWTVWPLAHTINF+FVPTEQRLLYINSIQIFYNVFLSIIGSK
Sbjct: 1 MVRCSALPAALVALGSSSCTAFV-TPLVTRVPVAPS-TTSMSLKGPAGRSSSPINKAASVVGKALFGRPGGVKMGNXXXXXXXXXXXXXXXXXXXQGSFDDNEEEGRGMDALAMLGVLATVKDGAGGAWDAYNSALADKPILVKACTSFVGFSIGDFLAQKGTSKESFSYARLARMAAFGFLFHGTISHFFYNALDSALPGTAAMTVIQKVIIDQVFWAPIFTLIFFTWIGVTSGASPSEIVAKVKSDLVQGVVGSWTVWPLAHTINFKFVPTEQRLLYINSIQIFYNVFLSIIGSK 295
BLAST of mRNA_D-herbacea_F_contig112.987.1 vs. uniprot
Match: A0A836CE62_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CE62_9STRA) HSP 1 Score: 248 bits (634), Expect = 1.120e-71 Identity = 121/198 (61.11%), Postives = 147/198 (74.24%), Query Frame = 1
Query: 406 FSADDGETDAVAM--LGVLASIKGSASNVWDSYNSALAQNPIAVKACTSLVGFSIGDFLAQKGTSK-DKFSYERLARMAAFGFLFHGTISHFFYNALDAALPGTAAITVAQKVVIDQVFWAPIFTLIFFTWIGVTSGSSPNEIVTKIKNDLISGVMGSWTVWPLAHTINFRFVPTEQRLLYINSIQIFYNVFLSIIGS 990
F +DG +A+ +GVL ++WDSYN L + PI KACTSLVGFS+GD LAQK +K ++F Y+RLARMAAFGF+FHGTISHFFYN LD +PG + +AQKV DQV WAPIFT ++ TW+GVTSG SP E+ KIK DL+ GV+GSW+VWPL H I F+FVP EQRLLYIN IQI YNVFLS++GS
Sbjct: 93 FEEEDGNDAMIALAAMGVLG-------DLWDSYNKVLGEKPILTKACTSLVGFSVGDTLAQKFVAKGERFDYQRLARMAAFGFMFHGTISHFFYNKLDEVIPGKTPLAIAQKVFTDQVLWAPIFTFVYLTWMGVTSGLSPPEVGEKIKTDLVKGVVGSWSVWPLVHAIGFKFVPLEQRLLYINCIQIGYNVFLSVLGS 283
BLAST of mRNA_D-herbacea_F_contig112.987.1 vs. uniprot
Match: A0A835Z5E2_9STRA (Peroxisomal membrane protein-related n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5E2_9STRA) HSP 1 Score: 210 bits (535), Expect = 2.450e-59 Identity = 101/173 (58.38%), Postives = 128/173 (73.99%), Query Frame = 1
Query: 478 SNVWDSYNSALAQNPIAVKACTSLVGFSIGDFLAQKGTSKD-KFSYERLARMAAFGFLFHGTISHFFYNALDAALPGTAAITVAQKVVIDQVFWAPIFTLIFFTWIGVTSGSSPNEIVTKIKNDLISGVMGSWTVWPLAHTINFRFVPTEQRLLYINSIQIFYNVFLSIIGSK 993
+ +W +YN AL P+ VKACTSL GF++GD LAQK +KD ++ + R R+ +FG L HG H+FY LD+ LPGTA +TVA KV IDQ W PIF ++FF+++G+T G S ++I KIK DL + VMGSWTVW AHTINF+FVPT QRLLYINSIQI YNVFLS +G+K
Sbjct: 2 AGIWAAYNRALTAQPLLVKACTSLTGFTVGDILAQKFINKDAEYDFMRTVRLGSFGALVHGPTGHWFYGMLDSKLPGTAPMTVATKVAIDQTIWNPIFGIMFFSYLGLTEGKSVDQIYQKIKADLATAVMGSWTVWIPAHTINFKFVPTSQRLLYINSIQIGYNVFLSFLGNK 174
BLAST of mRNA_D-herbacea_F_contig112.987.1 vs. uniprot
Match: A0A7S2FYX3_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FYX3_9STRA) HSP 1 Score: 211 bits (536), Expect = 1.610e-58 Identity = 116/237 (48.95%), Postives = 147/237 (62.03%), Query Frame = 1
Query: 286 VSKVLFSRPGGVKFGNNGGNGGMMXXXXXXXXXXXXXXXXFSADDGETDAVAMLGVLASIKGSASNVWDSYNSALAQNPIAVKACTSLVGFSIGDFLAQKGTSKD-KFSYERLARMAAFGFLFHGTISHFFYNALDAALPGTAAITVAQKVVIDQVFWAPIFTLIFFTWIGVTSGSSPNEIVTKIKNDLISGVMGSWTVWPLAHTINFRFVPTEQRLLYINSIQIFYNVFLSIIGSK 993
+ K F+ GG FG NG GG XXX A G+ DA K +W +YN+ L NPI KA TS++GF++GD LAQ K ++ R R+A+FGFL HGT H+FY LD A+PGT A+ V KV IDQV W PIF ++FF+++G T+G P + K+K DL++ V GSWTVWP+AH INFRF+PT QRLLYIN+IQIFYNVFLSIIG+K
Sbjct: 35 IRKSPFNNKGG--FGTNGNIGG-----NGQPPIXXXGGLNADASGGDGDA----------KEDGQGLWAAYNNKLETNPILTKALTSMIGFTLGDILAQNFVEKKGEYDIMRTIRLASFGFLIHGTTGHWFYGKLDKAIPGTGAMQVFSKVGIDQVLWNPIFGVMFFSYMGFTNGDGPAAVAAKVKRDLMTQVTGSWTVWPIAHAINFRFIPTSQRLLYINTIQIFYNVFLSIIGNK 254
BLAST of mRNA_D-herbacea_F_contig112.987.1 vs. uniprot
Match: A0A5J4YL21_PORPP (Protein sym-1 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YL21_PORPP) HSP 1 Score: 210 bits (535), Expect = 7.510e-58 Identity = 102/171 (59.65%), Postives = 122/171 (71.35%), Query Frame = 1
Query: 487 WDSYNSALAQNPIAVKACTSLVGFSIGDFLAQK--GTSKDKFSYERLARMAAFGFLFHGTISHFFYNALDAALPGTAAITVAQKVVIDQVFWAPIFTLIFFTWIGVTSGSSPNEIVTKIKNDLISGVMGSWTVWPLAHTINFRFVPTEQRLLYINSIQIFYNVFLSIIGSK 993
W +YNSAL P+ +KA TS VGFS+GD LAQK G RL RMAAFGFL HG H+FY ALD A+PGT A VA KV IDQ+ WAPIFT++FF +IG G S ++I K+K D +GV GSW VWPL HTINFRF+P+ QRLLYIN+IQI YN+FLS+I +K
Sbjct: 117 WKAYNSALEAQPLLIKAMTSFVGFSLGDILAQKFLGPKNAALDMNRLGRMAAFGFLIHGPTGHYFYGALDRAIPGTEAWKVASKVAIDQILWAPIFTVMFFAFIGAMEGRSVDDIKQKVKRDTWTGVTGSWKVWPLVHTINFRFIPSSQRLLYINTIQIAYNMFLSLIANK 287
BLAST of mRNA_D-herbacea_F_contig112.987.1 vs. uniprot
Match: D8LGB2_ECTSI (Peroxisomal membrane protein-related n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGB2_ECTSI) HSP 1 Score: 207 bits (526), Expect = 7.650e-58 Identity = 100/173 (57.80%), Postives = 124/173 (71.68%), Query Frame = 1
Query: 478 SNVWDSYNSALAQNPIAVKACTSLVGFSIGDFLAQKGTS-KDKFSYERLARMAAFGFLFHGTISHFFYNALDAALPGTAAITVAQKVVIDQVFWAPIFTLIFFTWIGVTSGSSPNEIVTKIKNDLISGVMGSWTVWPLAHTINFRFVPTEQRLLYINSIQIFYNVFLSIIGSK 993
S +W +YN ALA P+ VKA TS GF++GD LAQK S +D + + R R+ FG L HG H+FY LDA LPGT +TVA KV IDQ W PIF ++FFT++G+ G S ++I KIKNDL + VMGSWTVW AHTINF+FVPT QRLLYIN+IQI YN+FLS +G+K
Sbjct: 2 SGIWAAYNKALAAQPLLVKAMTSFTGFTVGDILAQKFISPEDDYDFMRTLRLGTFGALVHGPTGHYFYGMLDAKLPGTKPMTVASKVAIDQTIWNPIFGVMFFTYLGLAEGKSVDDIQKKIKNDLATAVMGSWTVWIPAHTINFKFVPTSQRLLYINTIQIGYNIFLSFLGNK 174
BLAST of mRNA_D-herbacea_F_contig112.987.1 vs. uniprot
Match: A0A7S2XWX9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XWX9_9STRA) HSP 1 Score: 209 bits (532), Expect = 2.080e-57 Identity = 99/177 (55.93%), Postives = 126/177 (71.19%), Query Frame = 1
Query: 478 SNVWDSYNSALAQNPIAVKACTSLVGFSIGDFLAQKGTSK-DKFSYERLARMAAFGFLFHGTISHFFYNALDAALPGTAAITVAQKVVIDQVFWAPIFTLIFFTWIGVTSGSSPNEIVTKIKNDLISGVMGSWTVWPLAHTINFRFVPTEQRLLYINSIQIFYNVFLSIIGSK*NTT 1005
+++W +YN+AL +PI KA TSLVGFS+GD LAQK S + F + R+AR+A+FG LFHG + H+FY LD +PGTA VA KV IDQ+ W PIF F ++G G + E+ KIKNDL+ V GSWTVWP+AH INFRF+PT QRLLYINSIQ+FYN FLS + S ++T
Sbjct: 115 ASLWAAYNAALESSPITTKALTSLVGFSLGDILAQKFLSAGEPFDFLRMARLASFGLLFHGPVGHYFYGFLDTKIPGTALSVVASKVAIDQIIWNPIFGTFFLGYMGFAEGKNAGEVGQKIKNDLVKAVTGSWTVWPIAHAINFRFIPTSQRLLYINSIQVFYNCFLSFLASGGSST 291
BLAST of mRNA_D-herbacea_F_contig112.987.1 vs. uniprot
Match: A0A835Z9Q4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9Q4_9STRA) HSP 1 Score: 209 bits (533), Expect = 2.420e-57 Identity = 123/241 (51.04%), Postives = 153/241 (63.49%), Query Frame = 1
Query: 304 SRPGG----VKFGNNGGNGGMMXXXXXXXXXXXXXXXXFSADDGETDAVAMLGVLASIKGSASNVWDSYNSALAQNPIAVKACTSLVGFSIGDFLAQKGTSK-DKFSYERLARMAAFGFLFHGTISHFFYNALDAALPGTAAITVAQKVVIDQVFWAPIFTLIFFTWIGVTSGSSPNEIVTKIKNDLISGVMGSWTVWPLAHTINFRFVPTEQRLLYINSIQIFYNVFLSIIGSK*NTTFT 1011
S PGG V G N GG + XXXXXXXX SA D G L +I W +YN++L + PI KA TS++GF +GDFLAQK SK +K +ERL RMA+FG L HGT HFFY LD+ +PGTAA+TVA KV IDQ W PIF +FF ++G G SP+ + +I+N+L + V GSWTVWP+AH INFR +PT QRLLYINS+QI YN+FLSI+ + T T
Sbjct: 60 SSPGGIIRNVFMGKNKSGGGNINXXXXXXXXKGPPTGPLSASSASGDGKKKAGGLMAI-------WAAYNNSLDKRPILTKALTSMIGFGLGDFLAQKFISKSEKIDWERLGRMASFGLLIHGTTGHFFYGMLDSKIPGTAALTVATKVFIDQAIWNPIFGCMFFGYMGFAEGLSPSAVKARIQNNLWASVKGSWTVWPVAHAINFRCIPTSQRLLYINSVQIGYNMFLSILSQRAQATDT 293
BLAST of mRNA_D-herbacea_F_contig112.987.1 vs. uniprot
Match: A0A6S9LPN5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9LPN5_HETAK) HSP 1 Score: 204 bits (518), Expect = 5.030e-57 Identity = 101/173 (58.38%), Postives = 121/173 (69.94%), Query Frame = 1
Query: 478 SNVWDSYNSALAQNPIAVKACTSLVGFSIGDFLAQKGTS-KDKFSYERLARMAAFGFLFHGTISHFFYNALDAALPGTAAITVAQKVVIDQVFWAPIFTLIFFTWIGVTSGSSPNEIVTKIKNDLISGVMGSWTVWPLAHTINFRFVPTEQRLLYINSIQIFYNVFLSIIGSK 993
S +W YN+ L P+A KA TSL GF+IGD LAQK + +D + R RM AFG LFHG H+FY LD LPGTA TVA KV IDQ+ W PIF + FF+++G G S EIV KIKNDL++ V GSWTVW AH INFRF+P+ QRLLYINSIQI YN+FLS +G+K
Sbjct: 2 SGLWAKYNAFLEAQPLACKALTSLTGFTIGDILAQKFINPEDDYDVARTVRMGAFGMLFHGPTGHYFYGFLDGKLPGTATTTVATKVAIDQLIWNPIFGVCFFSFLGAAEGKSGGEIVDKIKNDLMTAVTGSWTVWVPAHIINFRFIPSSQRLLYINSIQIGYNMFLSFLGNK 174
BLAST of mRNA_D-herbacea_F_contig112.987.1 vs. uniprot
Match: A0A7S0BQD5_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BQD5_9RHOD) HSP 1 Score: 207 bits (526), Expect = 5.550e-57 Identity = 101/169 (59.76%), Postives = 120/169 (71.01%), Query Frame = 1
Query: 484 VWDSYNSALAQNPIAVKACTSLVGFSIGDFLAQKGTSKDKFSYERLARMAAFGFLFHGTISHFFYNALDAALPGTAAITVAQKVVIDQVFWAPIFTLIFFTWIGVTSGSSPNEIVTKIKNDLISGVMGSWTVWPLAHTINFRFVPTEQRLLYINSIQIFYNVFLSIIGS 990
+W +YNS L PI KA TSLVGF++GD LAQK ++F Y+RL RMAAFG LFHG H+FY LD + GT + V KV IDQ+ WAPIF + FF +G G S EI KI+NDL++ V SW VWPLAH INFRF+PTEQRLLYIN+IQI YNVFLSIIG+
Sbjct: 89 LWAAYNSLLETQPILTKALTSLVGFAVGDLLAQKYLGDEEFKYDRLLRMAAFGALFHGPTGHYFYGFLDRLIVGTEPLKVISKVAIDQLLWAPIFGVAFFGILGAMEGKSVKEIKAKIENDLVTAVTTSWKVWPLAHAINFRFIPTEQRLLYINAIQIGYNVFLSIIGN 257 The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig112.987.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-herbacea_F_contig112.987.1 >prot_D-herbacea_F_contig112.987.1 ID=prot_D-herbacea_F_contig112.987.1|Name=mRNA_D-herbacea_F_contig112.987.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=294bp MVRASAFPLTLVALASKSCMGFVPAPVVTRVAPSSTTSMSLKGPGKSSSPback to top mRNA from alignment at D-herbacea_F_contig112:843593..852659- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-herbacea_F_contig112.987.1 ID=mRNA_D-herbacea_F_contig112.987.1|Name=mRNA_D-herbacea_F_contig112.987.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=9067bp|location=Sequence derived from alignment at D-herbacea_F_contig112:843593..852659- (Desmarestia herbacea DmunF female)back to top Coding sequence (CDS) from alignment at D-herbacea_F_contig112:843593..852659- >mRNA_D-herbacea_F_contig112.987.1 ID=mRNA_D-herbacea_F_contig112.987.1|Name=mRNA_D-herbacea_F_contig112.987.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=1764bp|location=Sequence derived from alignment at D-herbacea_F_contig112:843593..852659- (Desmarestia herbacea DmunF female)back to top |