mRNA_D-herbacea_F_contig112.982.1 (mRNA) Desmarestia herbacea DmunF female
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Overview
Homology
BLAST of mRNA_D-herbacea_F_contig112.982.1 vs. uniprot
Match: D8LC00_ECTSI (Glutaredoxin n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LC00_ECTSI) HSP 1 Score: 145 bits (365), Expect = 5.820e-43 Identity = 74/105 (70.48%), Postives = 85/105 (80.95%), Query Frame = 2
Query: 23 MGSEVDFVKELVASKPLVVFSKSYCPYCTKAKKSLGAVGAKDYELLELDQMGNGSAIQDALVEITGQRSVPNVFIAGKSIGGGDDTARLQKSGDLLTKLTEAGAV 337
M VD V E+V +VV+SK+YCP+CTKAKK+L VGAK YEL+ELD++ NGSAIQDAL ITGQRSVPNVFI G SIGGGDDT RLQKSG+LLTK+T GAV
Sbjct: 1 MSEHVDAVNEMVGQHGVVVYSKTYCPFCTKAKKALKDVGAK-YELIELDEVDNGSAIQDALQSITGQRSVPNVFIGGTSIGGGDDTVRLQKSGELLTKVTAVGAV 104
BLAST of mRNA_D-herbacea_F_contig112.982.1 vs. uniprot
Match: A0A7S1B3V4_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1B3V4_9STRA) HSP 1 Score: 125 bits (315), Expect = 2.860e-35 Identity = 58/99 (58.59%), Postives = 79/99 (79.80%), Query Frame = 2
Query: 41 FVKELVASKPLVVFSKSYCPYCTKAKKSLGAVGAKDYELLELDQMGNGSAIQDALVEITGQRSVPNVFIAGKSIGGGDDTARLQKSGDLLTKLTEAGAV 337
++++ + S +VVFSK+YCP+CTKAK+SL VG +++ +ELDQM +GS+IQ L+ +TGQR+VPNVFI GKSIGGGDDTA L++SG L T L AGA+
Sbjct: 12 YIQDTIGSNKVVVFSKTYCPFCTKAKRSLANVGCTNFKSVELDQMADGSSIQSGLLSLTGQRTVPNVFIGGKSIGGGDDTAALEQSGKLKTMLQAAGAL 110
BLAST of mRNA_D-herbacea_F_contig112.982.1 vs. uniprot
Match: UPI0009E614DC (glutaredoxin-like n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E614DC) HSP 1 Score: 114 bits (286), Expect = 6.540e-31 Identity = 54/103 (52.43%), Postives = 73/103 (70.87%), Query Frame = 2
Query: 29 SEVDFVKELVASKPLVVFSKSYCPYCTKAKKSLGAVGAKDYELLELDQMGNGSAIQDALVEITGQRSVPNVFIAGKSIGGGDDTARLQKSGDLLTKLTEAGAV 337
S++DFV ++ S + VFSK YCPYCT AK +L G K+Y L+ELD++ +G+AIQDAL ++TG R+VP VFI GK +GGG + LQ +G L L EAGA+
Sbjct: 4 SKIDFVNDITKSNKVAVFSKVYCPYCTMAKSALKEAGLKEYFLMELDEVDDGAAIQDALQKVTGARTVPRVFIGGKFVGGGSEVRDLQSAGKLTKMLQEAGAL 106
BLAST of mRNA_D-herbacea_F_contig112.982.1 vs. uniprot
Match: B3FNP8_HEVBR (Glutaredoxin n=1 Tax=Hevea brasiliensis TaxID=3981 RepID=B3FNP8_HEVBR) HSP 1 Score: 114 bits (286), Expect = 6.730e-31 Identity = 59/97 (60.82%), Postives = 72/97 (74.23%), Query Frame = 2
Query: 47 KELVASKPLVVFSKSYCPYCTKAKKSLGAVGAKDYELLELDQMGNGSAIQDALVEITGQRSVPNVFIAGKSIGGGDDTARLQKSGDLLTKLTEAGAV 337
KELV+S +VVFSK+YCPYCT KK L +GA +Y+ +ELD G+GS +Q AL E TGQRSVPNVFI+GK IGG D T + K G L+ LTEAGA+
Sbjct: 7 KELVSSNSVVVFSKTYCPYCTSVKKLLDELGA-NYKTVELDTEGDGSQVQSALAEWTGQRSVPNVFISGKHIGGCDTTTGMHKEGKLIPLLTEAGAL 102
BLAST of mRNA_D-herbacea_F_contig112.982.1 vs. uniprot
Match: A0A2V0NRF1_9CHLO (Glutaredoxin domain-containing protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0NRF1_9CHLO) HSP 1 Score: 114 bits (285), Expect = 8.250e-31 Identity = 55/99 (55.56%), Postives = 75/99 (75.76%), Query Frame = 2
Query: 41 FVKELVASKPLVVFSKSYCPYCTKAKKSLGAVGAKDYELLELDQMGNGSAIQDALVEITGQRSVPNVFIAGKSIGGGDDTARLQKSGDLLTKLTEAGAV 337
FVK+ + + +VVFSK+YCPYC KAK++L + ++ ++ELDQ G+G AIQDAL+++TG RSVP VF+AGK IGGGDDTA SG+L T L + GA+
Sbjct: 5 FVKDTIKANKVVVFSKTYCPYCVKAKRALQQL-TTNFHVVELDQRGDGDAIQDALLDLTGARSVPRVFVAGKFIGGGDDTAAKAASGELKTLLADVGAL 102
BLAST of mRNA_D-herbacea_F_contig112.982.1 vs. uniprot
Match: UPI00077ADEFB (glutaredoxin-like n=2 Tax=Acropora TaxID=6127 RepID=UPI00077ADEFB) HSP 1 Score: 114 bits (284), Expect = 1.240e-30 Identity = 56/103 (54.37%), Postives = 68/103 (66.02%), Query Frame = 2
Query: 29 SEVDFVKELVASKPLVVFSKSYCPYCTKAKKSLGAVGAKDYELLELDQMGNGSAIQDALVEITGQRSVPNVFIAGKSIGGGDDTARLQKSGDLLTKLTEAGAV 337
S++ +K V+ +VV+SK+YCP+C KAK +LG G KDY L ELD M G A QDAL EITG RSVP VFI GK +GGGDD L G+L L E GA+
Sbjct: 2 SKISEIKLKVSENKVVVYSKTYCPFCKKAKSALGETGLKDYVLFELDTMDEGDAYQDALKEITGARSVPRVFIGGKFVGGGDDVKALHSRGELKKMLVECGAL 104
BLAST of mRNA_D-herbacea_F_contig112.982.1 vs. uniprot
Match: A8C9L0_MONCP (Glutaredoxin n=1 Tax=Montipora capitata TaxID=46704 RepID=A8C9L0_MONCP) HSP 1 Score: 113 bits (282), Expect = 2.500e-30 Identity = 56/103 (54.37%), Postives = 73/103 (70.87%), Query Frame = 2
Query: 29 SEVDFVKELVASKPLVVFSKSYCPYCTKAKKSLGAVGAKDYELLELDQMGNGSAIQDALVEITGQRSVPNVFIAGKSIGGGDDTARLQKSGDLLTKLTEAGAV 337
++VD +K V +VV+SK+YCP+C KAK +L G KDY L+ELD++ +G A QDAL+EIT RSVP VFI GK +GGGDD +LQ +G L L EAGA+
Sbjct: 2 TKVDEIKLKVNGNKVVVYSKTYCPFCKKAKTALADAGLKDYVLIELDELPDGDAYQDALLEITKGRSVPRVFIGGKFVGGGDDVKKLQDTGKLKPMLKEAGAL 104
BLAST of mRNA_D-herbacea_F_contig112.982.1 vs. uniprot
Match: A0A067BZI2_SAPPC (Glutaredoxin domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067BZI2_SAPPC) HSP 1 Score: 113 bits (282), Expect = 2.730e-30 Identity = 60/108 (55.56%), Postives = 80/108 (74.07%), Query Frame = 2
Query: 23 MGSEVDFVKELVASKPLVVFSKSYCPYCTKAKKSLGAVGAKDYELLELDQMGN---GSAIQDALVEITGQRSVPNVFIAGKSIGGGDDTARLQKSGDLLTKLTEAGAV 337
M S V FVK L++ +VVFSK+ CPYC AK LG+VGA+ + ++EL+QMG+ G +Q+A ++TGQR+VPNVFI GKSIGGG DTA LQK+G L+ L +AGA+
Sbjct: 1 MVSGVQFVKSLISQHGVVVFSKTTCPYCRMAKDVLGSVGAR-FHVVELNQMGDAPTGDDVQNACFQLTGQRTVPNVFINGKSIGGGSDTAALQKAGKLVPLLKDAGAL 107
BLAST of mRNA_D-herbacea_F_contig112.982.1 vs. uniprot
Match: A0A3M6UI22_POCDA (Glutaredoxin domain-containing protein (Fragment) n=2 Tax=Pocillopora damicornis TaxID=46731 RepID=A0A3M6UI22_POCDA) HSP 1 Score: 114 bits (284), Expect = 3.240e-30 Identity = 56/105 (53.33%), Postives = 71/105 (67.62%), Query Frame = 2
Query: 23 MGSEVDFVKELVASKPLVVFSKSYCPYCTKAKKSLGAVGAKDYELLELDQMGNGSAIQDALVEITGQRSVPNVFIAGKSIGGGDDTARLQKSGDLLTKLTEAGAV 337
M ++V+F+K V +VV+SK+YCP+C KAK +L A G KDY L+ELD+ +G QDAL +ITG RSVP VFI G +GGGDD LQ G L KL AGA+
Sbjct: 33 MSNKVEFIKAQVKDNKVVVYSKTYCPFCKKAKDALKAAGLKDYLLVELDERDDGDEFQDALQKITGGRSVPRVFIGGTFVGGGDDVQGLQNKGQLKPKLENAGAL 137
BLAST of mRNA_D-herbacea_F_contig112.982.1 vs. uniprot
Match: A0A836CIL9_9STRA (Thioredoxin-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIL9_9STRA) HSP 1 Score: 112 bits (281), Expect = 3.250e-30 Identity = 54/98 (55.10%), Postives = 74/98 (75.51%), Query Frame = 2
Query: 44 VKELVASKPLVVFSKSYCPYCTKAKKSLGAVGAKDYELLELDQMGNGSAIQDALVEITGQRSVPNVFIAGKSIGGGDDTARLQKSGDLLTKLTEAGAV 337
+K VAS P+V++SKSYCPYC KAK++L A+ A +E +ELDQ+ NG+ IQ AL +TG +VP VF+ GK IGGGDDTAR Q++G+L+ +T AG +
Sbjct: 5 IKAKVASTPVVIYSKSYCPYCAKAKRALQAIKAH-FEAIELDQVSNGAEIQQALKGVTGSSTVPQVFVGGKYIGGGDDTARKQQNGELVQLVTAAGGL 101 The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig112.982.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-herbacea_F_contig112.982.1 >prot_D-herbacea_F_contig112.982.1 ID=prot_D-herbacea_F_contig112.982.1|Name=mRNA_D-herbacea_F_contig112.982.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=106bp MGSEVDFVKELVASKPLVVFSKSYCPYCTKAKKSLGAVGAKDYELLELDQback to top mRNA from alignment at D-herbacea_F_contig112:743891..750338+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-herbacea_F_contig112.982.1 ID=mRNA_D-herbacea_F_contig112.982.1|Name=mRNA_D-herbacea_F_contig112.982.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=6448bp|location=Sequence derived from alignment at D-herbacea_F_contig112:743891..750338+ (Desmarestia herbacea DmunF female)back to top Coding sequence (CDS) from alignment at D-herbacea_F_contig112:743891..750338+ >mRNA_D-herbacea_F_contig112.982.1 ID=mRNA_D-herbacea_F_contig112.982.1|Name=mRNA_D-herbacea_F_contig112.982.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=636bp|location=Sequence derived from alignment at D-herbacea_F_contig112:743891..750338+ (Desmarestia herbacea DmunF female)back to top |