mRNA_D-herbacea_F_contig112.975.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig112.975.1
Unique NamemRNA_D-herbacea_F_contig112.975.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig112.975.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig112contigD-herbacea_F_contig112:147954..148499 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size546
Cds size402
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927526.8226964-CDS-D-herbacea_F_contig112:147953..1483551622927526.8226964-CDS-D-herbacea_F_contig112:147953..148355Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig112 147954..148355 +
1690790216.2839398-CDS-D-herbacea_F_contig112:147953..1483551690790216.2839398-CDS-D-herbacea_F_contig112:147953..148355Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig112 147954..148355 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927526.8340816-UTR-D-herbacea_F_contig112:148355..1484991622927526.8340816-UTR-D-herbacea_F_contig112:148355..148499Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig112 148356..148499 +
1690790216.2922988-UTR-D-herbacea_F_contig112:148355..1484991690790216.2922988-UTR-D-herbacea_F_contig112:148355..148499Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig112 148356..148499 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig112.975.1prot_D-herbacea_F_contig112.975.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig112 147954..148355 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig112.975.1

>prot_D-herbacea_F_contig112.975.1 ID=prot_D-herbacea_F_contig112.975.1|Name=mRNA_D-herbacea_F_contig112.975.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=134bp
MVEKILLQKKKKRTQNRACTRCIVYCSTSPPRTPDRLLTDSTTRQTYRDK
DRQTDRQTDRDTHTRSSRGFLSDGIAHKDRQDKHEIAVFLYTNGIAHKQH
TSTTEAARPVRPGYSSRRRRYYVINKSYFYPPH*
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mRNA from alignment at D-herbacea_F_contig112:147954..148499+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig112.975.1 ID=mRNA_D-herbacea_F_contig112.975.1|Name=mRNA_D-herbacea_F_contig112.975.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=546bp|location=Sequence derived from alignment at D-herbacea_F_contig112:147954..148499+ (Desmarestia herbacea DmunF female)
ATGGTTGAAAAAATACTACTACAAAAAAAAAAAAAACGTACGCAAAATCG
TGCGTGTACGCGGTGCATCGTGTATTGTAGCACGTCACCGCCAAGAACTC
CTGACAGACTACTGACAGACTCTACCACTAGACAGACATATCGTGACAAG
GACAGACAGACAGACAGACAGACAGACAGAGATACACATACTCGTAGTAG
CCGCGGTTTTCTCAGTGACGGTATCGCACACAAGGACAGACAAGACAAAC
ACGAAATCGCGGTTTTCCTCTACACCAACGGCATCGCACACAAGCAGCAC
ACAAGTACTACTGAAGCCGCTCGGCCCGTTCGGCCAGGGTACAGCAGCAG
GAGAAGACGGTACTATGTAATAAACAAGAGCTATTTCTACCCCCCCCATT
AACATGCATACCGTACATTGTGATTTCCTTCAGAAATCCCGCCCGATAGC
GCTGCATATGCCTGCCTTCATGCATGCATGCCTGCATTCCTTAAAAACGA
GCGCGTGCCCTCTATGTATGTATATATATTGACATGCACGTAGGAC
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Coding sequence (CDS) from alignment at D-herbacea_F_contig112:147954..148499+

>mRNA_D-herbacea_F_contig112.975.1 ID=mRNA_D-herbacea_F_contig112.975.1|Name=mRNA_D-herbacea_F_contig112.975.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=804bp|location=Sequence derived from alignment at D-herbacea_F_contig112:147954..148499+ (Desmarestia herbacea DmunF female)
ATGGTTGAAAAAATACTACTACAAAAAAAAAAAAAACGTACGCAAAATCG
TGCGTGTACGCGGTGCATCGTGTATTGTAGCACGTCACCGCCAAGAACTC
CTGACAGACTACTGACAGACTCTACCACTAGACAGACATATCGTGACAAG
GACAGACAGACAGACAGACAGACAGACAGAGATACACATACTCGTAGTAG
CCGCGGTTTTCTCAGTGACGGTATCGCACACAAGGACAGACAAGACAAAC
ACGAAATCGCGGTTTTCCTCTACACCAACGGCATCGCACACAAGCAGCAC
ACAAGTACTACTGAAGCCGCTCGGCCCGTTCGGCCAGGGTACAGCAGCAG
GAGAAGACGGTACTATGTAATAAACAAGAGCTATTTCTACCCCCCCCATT
AAATGGTTGAAAAAATACTACTACAAAAAAAAAAAAAACGTACGCAAAAT
CGTGCGTGTACGCGGTGCATCGTGTATTGTAGCACGTCACCGCCAAGAAC
TCCTGACAGACTACTGACAGACTCTACCACTAGACAGACATATCGTGACA
AGGACAGACAGACAGACAGACAGACAGACAGAGATACACATACTCGTAGT
AGCCGCGGTTTTCTCAGTGACGGTATCGCACACAAGGACAGACAAGACAA
ACACGAAATCGCGGTTTTCCTCTACACCAACGGCATCGCACACAAGCAGC
ACACAAGTACTACTGAAGCCGCTCGGCCCGTTCGGCCAGGGTACAGCAGC
AGGAGAAGACGGTACTATGTAATAAACAAGAGCTATTTCTACCCCCCCCA
TTAA
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