mRNA_D-herbacea_F_contig1113.967.1 (mRNA) Desmarestia herbacea DmunF female
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Overview
Homology
BLAST of mRNA_D-herbacea_F_contig1113.967.1 vs. uniprot
Match: A0A6H5L580_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L580_9PHAE) HSP 1 Score: 262 bits (670), Expect = 9.200e-80 Identity = 143/259 (55.21%), Postives = 182/259 (70.27%), Query Frame = 1
Query: 1 MEELVNTPMEPGQNPDDYFNQKRLLRIRTEKMGERISDRYFKDICVTGFTDNYKDVKMMMYRDPSFDVDQMQTTMRHMFLDEQSRNGTKGRIAGRGSVMTAVTSEQDIICYWCKNRGHSKKDCPKFKSR----TKPAGAAKWCSVHRTTTHRNEECYSQGATRP--TKNAS-VSLACTNCGHCTSADSKELTVDNTEPSHSDKPVINFAGSSDDFDGGFVYA--AGMPGR-FTPSAKGATLLVDSGASESFLDDELIPD 747
MEEL N PM PG+NPDDYFNQK LLR + +KMGE ISDR FKDICV GF+D YKDVK+M++RDP+F+V M +TMR++FLDEQSR G KGRIAGRG M T+ DIIC+ C GH +++CPK K+R TKPAGA KWCS H TT+H +EECY QG RP TK+++ V AC+NC HC+SA K+ S+++ V++F D FD GF++A + + GR F S+ G L+VDS ASE+ D+ LIPD
Sbjct: 156 MEELENNPMNPGENPDDYFNQKHLLRTQLDKMGEPISDRRFKDICVQGFSDEYKDVKLMVFRDPTFNVLDMLSTMRNIFLDEQSRKGWKGRIAGRGFAM--ATTASDIICHSCYEPGHIRRNCPKIKNRAKKKTKPAGATKWCSKHNTTSHSDEECYQQGGKRPEDTKDSNKVFTACSNCTHCSSASKKD-------DSNNEVAVVDFTRDEDAFDSGFMFATCSRISGRNFAASSTGVRLVVDSEASETMFDNRLIPD 405
BLAST of mRNA_D-herbacea_F_contig1113.967.1 vs. uniprot
Match: D7G6Q1_ECTSI (CCHC-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6Q1_ECTSI) HSP 1 Score: 250 bits (638), Expect = 9.310e-80 Identity = 139/262 (53.05%), Postives = 176/262 (67.18%), Query Frame = 1
Query: 1 MEELVNTPMEPGQNPDDYFNQKRLLRIRTEKMGERISDRYFKDICVTGFTDNYKDVKMMMYRDPSFDVDQMQTTMRHMFLDEQSRNGTKGRIAGRGSVMTAVTSEQDIICYWCKNRGHSKKDCPKFKSR-----TKPAGAAKWCSVHRTTTHRNEECYSQGATRP-TKNASVSLACTNCGHC----TSADSKELTVDNTEPSHSDKPVINFAGSSDDFDGGFVYAAGMPG-RFTPSAKGATLLVDSGASESFLDDELIPDLK 753
ME+L NT MEPGQNPDDYFN K LLR + EKMGE+ISDRYFKD+CVTGFT YK+VKM+M+RDP+F+V+ MQTTM HM LDEQSR G+KG IAGRG M SEQ+ C+ C +GH +++C + + + TKPAGA KWC H TT + +EECY QGA RP T S A + C HC +++D KELT + + S K I+ + D+ D GF+YA G +A+G TLLV+ GA+E+ DD LIP LK
Sbjct: 1 MEKLDNTSMEPGQNPDDYFNHKHLLRHKVEKMGEKISDRYFKDMCVTGFTHEYKNVKMIMHRDPNFNVNHMQTTMHHMALDEQSRKGSKGGIAGRGFPMVTTASEQET-CFGCGEKGHIRRNCLQRRGKGRQRKTKPAGATKWCCFHFTTKNSDEECYGQGAKRPITDQISTDKAFSACAHCAHFSSTSDRKELTT--AKEASSTKAAIDSSTDGDESDEGFMYATTRTGMEVEANAEGVTLLVEIGATETMRDDRLIPHLK 259
BLAST of mRNA_D-herbacea_F_contig1113.967.1 vs. uniprot
Match: A0A6H5KJB9_9PHAE (Uncharacterized protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJB9_9PHAE) HSP 1 Score: 257 bits (656), Expect = 2.260e-77 Identity = 138/263 (52.47%), Postives = 176/263 (66.92%), Query Frame = 1
Query: 1 MEELVNTPMEPGQNPDDYFNQKRLLRIRTEKMGERISDRYFKDICVTGFTDNYKDVKMMMYRDPSFDVDQMQTTMRHMFLDEQSRNGTKGRIAGRGSVMTAVTSEQDIICYWCKNRGHSKKDCPKFK------SRTKPAGAAKWCSVHRTTTHRNEECYSQGATRPTKNASVSLACTNCGHCTSAD----SKELTVDN-TEPSHSDKPVINFAGSSDDFDGGFVYAA----GMPGRFTPSAKGATLLVDSGASESFLDDELIP 744
+++L T MEPG+NPDD+FN+K LR + EKMGE ISDR FKDICV GF+++YKD+KMM++RDPSFDV QMQ TMR++FLDEQ R TKG+IAGRG M TS IC+ C GH +++CP + +TKPAGA KWCSVH TTTH +EECY+QGA RP + ACT+C HC++ +K T + TE ++K I+F+ D F GGF+Y A G FT +A G + LVDSGASE+ DD LIP
Sbjct: 136 LDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAMATKTSGP--ICFECNEPGHVRRNCPNRQREGHRAKKTKPAGATKWCSVHNTTTHSDEECYNQGAKRPERTGKAFSACTHCVHCSTQSRDTHAKPTTTETPTETEKTEKAEIDFSYDEDAFKGGFMYHATCSKGSGRTFTTTATGTSALVDSGASETMFDDRLIP 396
BLAST of mRNA_D-herbacea_F_contig1113.967.1 vs. uniprot
Match: A0A6H5KW66_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW66_9PHAE) HSP 1 Score: 252 bits (644), Expect = 4.550e-75 Identity = 142/241 (58.92%), Postives = 168/241 (69.71%), Query Frame = 1
Query: 1 MEELVNTPMEPGQNPDDYFNQKRLLRIRTEKMGERISDRYFKDICVTGFTDNYKDVKMMMYRDPSFDVDQMQTTMRHMFLDEQSRNGTKGRIAGRGSVMTAVTSEQDIICYWCKNRGHSKKDCP----KFKSRTKPAGAAKWCSVHRTTTHRNEECYSQGATRPTKNASVSLA---CTNCGHCTSADSK-ELTVDNTEPSHSDKPVINFAGSSDDFDGGFVYAAGMPGR-FTPSAKGATLL 696
MEEL+NTPMEP QNPDDYFNQK LLR + EKMGE ISD YF D CVTGFT+ YKDVKM+MYRDP F+VD+MQTTMRHMFLDEQSRNG KG IAGRG MTA TSE+ C+ C +GH ++C K K +TKPAGAAKWCSVH TT H +EEC+ QGATRP K+++ A C +C HC S +K EL + E S S + I+F+ + +G F+YA G P A GAT L
Sbjct: 116 MEELINTPMEPRQNPDDYFNQKHLLRHKAEKMGETISDCYFNDECVTGFTNEYKDVKMIMYRDPDFNVDKMQTTMRHMFLDEQSRNGPKGSIAGRGFAMTATTSEEPT-CFDCGEKGHIWRNCSEKRGKGKKKTKPAGAAKWCSVHFTTRHSDEECFEQGATRPKKSSNTGKALSACASCTHCFSTSNKTELAMTKQEAS-STQAEIDFSAEGESEEG-FMYAIVHKGEDLKPMATGATPL 353
BLAST of mRNA_D-herbacea_F_contig1113.967.1 vs. uniprot
Match: A0A6H5K4S9_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4S9_9PHAE) HSP 1 Score: 252 bits (644), Expect = 1.410e-74 Identity = 136/263 (51.71%), Postives = 171/263 (65.02%), Query Frame = 1
Query: 1 MEELVNTPMEPGQNPDDYFNQKRLLRIRTEKMGERISDRYFKDICVTGFTDNYKDVKMMMYRDPSFDVDQMQTTMRHMFLDEQSRNGTKGRIAGRGSVMTAVTSEQDIICYWCKNRGHSKKDCPKFK------SRTKPAGAAKWCSVHRTTTHRNEECYSQGATRPTKNASVSLACTNCGHCTSADSKE-----LTVDNTEPSHSDKPVINFAGSSDDFDGGFVYAA----GMPGRFTPSAKGATLLVDSGASESFLDDELIP 744
+++L T MEPG+NPDD+FN+K LR + EKMGE ISDR FKDICV GF+++YKD+KMM++RDPSFDV QMQ TMR++FLDEQ R TKG+IAGR M TS IC+ C GH +++CP + +TKPAGA KWCSVH TTTH +EECY+QGA RP + ACTNC HC++ +T E ++K I F+ D F GGF+Y A G FT +A G + LVDSGASE+ DD LIP
Sbjct: 136 LDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRVFAMATKTSGP--ICFECNEPGHVRRNCPNRQREGHRAKKTKPAGATKWCSVHNTTTHSDEECYNQGAKRPERTGKTFSACTNCVHCSTQTGDTHAKPTITEPPKETEKTEKAEIGFSYDEDAFKGGFMYHATCSKGSGRTFTTTATGTSALVDSGASETMFDDRLIP 396
BLAST of mRNA_D-herbacea_F_contig1113.967.1 vs. uniprot
Match: A0A6H5K3T5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3T5_9PHAE) HSP 1 Score: 254 bits (649), Expect = 1.740e-74 Identity = 137/264 (51.89%), Postives = 175/264 (66.29%), Query Frame = 1
Query: 1 MEELVNTPMEPGQNPDDYFNQKRLLRIRTEKMGERISDRYFKDICVTGFTDNYKDVKMMMYRDPSFDVDQMQTTMRHMFLDEQSRNGTKGRIAGRGSVMTAVTSEQDIICYWCKNRGHSKKDCPKFK------SRTKPAGAAKWCSVHRTTTHRNEECYSQGATRPTKNASVSLACTNCGHCTSADSKELTVDNT------EPSHSDKPVINFAGSSDDFDGGFVYAA----GMPGRFTPSAKGATLLVDSGASESFLDDELIP 744
+++L T MEPG+NPDD+FN+K LR + EKMGE ISDR FKDICV GF+++YKD+KMM++RDPSFDV QMQ TMR++FLDEQ R TKG+IAGRG M TS IC+ C GH +++CP + +TKPAGA KWCSVH TTTH +EECY+QGA RP + ACT+C HC S S+++ T E +++ I+F+ D F GGF+Y A G FT +A G + LVDSGASE+ DD LIP
Sbjct: 136 LDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAMATKTSGP--ICFECNEPGHVRRNCPNRQREGHRAKKTKPAGATKWCSVHNTTTHSDEECYNQGAKRPERTGKAFSACTHCVHC-STQSRDIQAKPTTTEIPKETEKTEQAEIDFSYDEDAFKGGFMYHATCSKGSGRTFTTTATGTSALVDSGASETMFDDRLIP 396
BLAST of mRNA_D-herbacea_F_contig1113.967.1 vs. uniprot
Match: A0A6H5JUN9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUN9_9PHAE) HSP 1 Score: 253 bits (647), Expect = 2.460e-74 Identity = 137/264 (51.89%), Postives = 175/264 (66.29%), Query Frame = 1
Query: 1 MEELVNTPMEPGQNPDDYFNQKRLLRIRTEKMGERISDRYFKDICVTGFTDNYKDVKMMMYRDPSFDVDQMQTTMRHMFLDEQSRNGTKGRIAGRGSVMTAVTSEQDIICYWCKNRGHSKKDCPKFK------SRTKPAGAAKWCSVHRTTTHRNEECYSQGATRPTKNASVSLACTNCGHCTSADSKELTVDNT------EPSHSDKPVINFAGSSDDFDGGFVYAA----GMPGRFTPSAKGATLLVDSGASESFLDDELIP 744
+++L T MEPG+NPDD+FN+K LR + EKMGE ISDR FKDICV GF+++YKD+KMM++RDPSFDV QMQ TMR++FLDEQ R TKG+IAGRG M TS IC+ C GH +++CP + +TKPAGA KWCSVH TTTH +EECY+QGA RP + ACT+C HC S S+++ T E ++K I+F+ D F GGF+Y A G FT +A G + LVDSGASE+ D+ LIP
Sbjct: 155 LDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAMATKTSGP--ICFECNEPGHVRRNCPNRQREGHRAKKTKPAGATKWCSVHNTTTHSDEECYNQGAKRPERTGKAFSACTHCVHC-STQSRDIHAKPTTTEIPKETEKTEKAEIDFSYDEDAFKGGFMYHATCSKGSGRTFTTTATGTSALVDSGASETMFDNRLIP 415
BLAST of mRNA_D-herbacea_F_contig1113.967.1 vs. uniprot
Match: A0A6H5JZ53_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ53_9PHAE) HSP 1 Score: 243 bits (621), Expect = 3.650e-74 Identity = 135/261 (51.72%), Postives = 179/261 (68.58%), Query Frame = 1
Query: 1 MEELVNTPMEPGQNPDDYFNQKRLLRIRTEKMGERISDRYFKDICVTGFTDNYKDVKMMMYRDPSFDVDQMQTTMRHMFLDEQSRNGTKGRIAGRGSVMTAVTSEQDIICYWCKNRGHSKKDCPKFKSR----TKPAGAAKWCSVHRTTTHRNEECYSQ--GATRP--TKNASVSLA-CTNCGHCTSADSKELTVDNTEPSHSDKPVINFAGSSDDFDGGFVYA--AGMPGR-FTPSAKGATLLVDSGASESFLDDELIPD 747
MEEL N PM PG+NPDDYFNQK L ++ +KMGE ISDR FKDICV GF+D Y+DVK+M++RDP+F+V MQ+TMR+++LDEQSR G KGRIAGRG M T+ DIIC+ C GH +++CPK K+R TKPAGA KWCS H TT+H +EECY Q G P TK++S + C++C HC+S +K S+++ V++F D FD GF++A + + GR F S+ G LLVD+GAS + D+ L+PD
Sbjct: 1 MEELENNPMNPGENPDDYFNQKHPLCVQLDKMGEPISDRRFKDICVQGFSDEYEDVKLMLFRDPTFNVLDMQSTMRNIYLDEQSRKGWKGRIAGRGFAM--ATTASDIICHSCYEPGHIRRNCPKIKNRAKKKTKPAGATKWCSKHNTTSHSDEECYQQXQGGKCPEDTKDSSKAFTPCSDCTHCSSTCNKH-------DSNNEVTVVDFTRDEDAFDSGFMFATCSRISGRNFAASSTGVGLLVDTGASATMFDNRLMPD 252
BLAST of mRNA_D-herbacea_F_contig1113.967.1 vs. uniprot
Match: A0A6H5L1Z9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1Z9_9PHAE) HSP 1 Score: 252 bits (644), Expect = 9.140e-74 Identity = 136/264 (51.52%), Postives = 175/264 (66.29%), Query Frame = 1
Query: 1 MEELVNTPMEPGQNPDDYFNQKRLLRIRTEKMGERISDRYFKDICVTGFTDNYKDVKMMMYRDPSFDVDQMQTTMRHMFLDEQSRNGTKGRIAGRGSVMTAVTSEQDIICYWCKNRGHSKKDCPKFK------SRTKPAGAAKWCSVHRTTTHRNEECYSQGATRPTKNASVSLACTNCGHCTSADSKELTVDNT------EPSHSDKPVINFAGSSDDFDGGFVYAA----GMPGRFTPSAKGATLLVDSGASESFLDDELIP 744
+++L T MEPG+NPDD+FN+K LR + EKMGE ISDR FKDICV GF+++YKD+KMM++RDPSFDV QMQ TMR++FLDEQ R TKG+IAGRG M TS IC+ C GH +++CP + +TKPAGA KWCSVH TTTH +EECY+QGA RP + ACT+C HC S S+++ T E +++ I+F+ D F GGF+Y A G FT +A G + LVDSGASE+ D+ LIP
Sbjct: 136 LDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAMATKTSGP--ICFECNEPGHVRRNCPNRQREGHRAKKTKPAGATKWCSVHNTTTHSDEECYNQGAKRPERTGKAFSACTHCVHC-STQSRDIQAKPTTTEIPKETEKTEQAEIDFSYDEDAFKGGFMYHATCSKGSGRTFTTTATGTSALVDSGASETMFDNRLIP 396
BLAST of mRNA_D-herbacea_F_contig1113.967.1 vs. uniprot
Match: A0A6H5KHG5_9PHAE (Uncharacterized protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHG5_9PHAE) HSP 1 Score: 254 bits (648), Expect = 9.400e-74 Identity = 137/264 (51.89%), Postives = 175/264 (66.29%), Query Frame = 1
Query: 1 MEELVNTPMEPGQNPDDYFNQKRLLRIRTEKMGERISDRYFKDICVTGFTDNYKDVKMMMYRDPSFDVDQMQTTMRHMFLDEQSRNGTKGRIAGRGSVMTAVTSEQDIICYWCKNRGHSKKDCPKFK------SRTKPAGAAKWCSVHRTTTHRNEECYSQGATRPTKNASVSLACTNCGHCTSADSKELTVDNT------EPSHSDKPVINFAGSSDDFDGGFVYAA----GMPGRFTPSAKGATLLVDSGASESFLDDELIP 744
+++L T MEPG+NPDD+FN+K LR + EKMGE ISDR FKDICV GF+++YKD+KMM++RDPSFDV QMQ TMR++FLDEQ R TKG+IAGRG M TS IC+ C GH +++CP + +TKPAGA KWCSVH TTTH +EECY+QGA RP + ACT+C HC S S+++ T E ++K I+F+ D F GGF+Y A G FT +A G + LVDSGASE+ D+ LIP
Sbjct: 136 LDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAMATKTSGP--ICFECNEPGHVRRNCPNRQREGHRAKKTKPAGATKWCSVHNTTTHSDEECYNQGAKRPERTGKAFSACTHCVHC-STQSRDIQAKPTTTEIPKETEKTEKAEIDFSYDEDAFKGGFMYHATCSKGSGRTFTTTATGTSALVDSGASETMFDNRLIP 396 The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig1113.967.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-herbacea_F_contig1113.967.1 >prot_D-herbacea_F_contig1113.967.1 ID=prot_D-herbacea_F_contig1113.967.1|Name=mRNA_D-herbacea_F_contig1113.967.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=251bp MEELVNTPMEPGQNPDDYFNQKRLLRIRTEKMGERISDRYFKDICVTGFTback to top mRNA from alignment at D-herbacea_F_contig1113:61831..62583+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-herbacea_F_contig1113.967.1 ID=mRNA_D-herbacea_F_contig1113.967.1|Name=mRNA_D-herbacea_F_contig1113.967.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=753bp|location=Sequence derived from alignment at D-herbacea_F_contig1113:61831..62583+ (Desmarestia herbacea DmunF female)back to top Coding sequence (CDS) from alignment at D-herbacea_F_contig1113:61831..62583+ >mRNA_D-herbacea_F_contig1113.967.1 ID=mRNA_D-herbacea_F_contig1113.967.1|Name=mRNA_D-herbacea_F_contig1113.967.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=1506bp|location=Sequence derived from alignment at D-herbacea_F_contig1113:61831..62583+ (Desmarestia herbacea DmunF female)back to top |