mRNA_D-herbacea_F_contig111.963.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_D-herbacea_F_contig111.963.1
Unique Name	mRNA_D-herbacea_F_contig111.963.1
Type	mRNA
Organism	Desmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)

Homology

[Close]

BLAST of mRNA_D-herbacea_F_contig111.963.1 vs. uniprot
Match: A0A6H5K5T3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5T3_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 2.330e-10
Identity = 23/52 (44.23%), Postives = 34/52 (65.38%), Query Frame = 1

Query:   19 GINFDNICCTPECGTCGGTGCKTRVGGSSNCCFQKIIESDVFCGDSGVAPCI 174
            GI   ++CC+  CG+CGG+GC +R GGS +CC   +  S  +C  +G APC+
Sbjct:    8 GIQASDVCCSASCGSCGGSGCTSRDGGSESCCGGGVRASGRYCSITGEAPCL 59

[Close]

BLAST of mRNA_D-herbacea_F_contig111.963.1 vs. uniprot
Match: A0A6H5K607_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K607_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 5.970e-10
Identity = 23/52 (44.23%), Postives = 33/52 (63.46%), Query Frame = 1

Query:   19 GINFDNICCTPECGTCGGTGCKTRVGGSSNCCFQKIIESDVFCGDSGVAPCI 174
            GI   ++CC+  CG+CGG+GC  R GGS +CC   +  S  +C  +G APC+
Sbjct:    8 GIQSSDVCCSASCGSCGGSGCTGRDGGSESCCGGGVRASGRYCSITGEAPCM 59

[Close]

BLAST of mRNA_D-herbacea_F_contig111.963.1 vs. uniprot
Match: A0A6H5K8Q7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8Q7_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 9.920e-10
Identity = 23/52 (44.23%), Postives = 33/52 (63.46%), Query Frame = 1

Query:   19 GINFDNICCTPECGTCGGTGCKTRVGGSSNCCFQKIIESDVFCGDSGVAPCI 174
            GI   ++CC+  CG+CGG+GC  R GGS +CC   +  S  +C  +G APC+
Sbjct:    8 GIQSSDVCCSASCGSCGGSGCTGRDGGSESCCGGGVRASGRYCSITGEAPCM 59

[Close]

BLAST of mRNA_D-herbacea_F_contig111.963.1 vs. uniprot
Match: A0A6H5KHK8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHK8_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 1.190e-9
Identity = 23/52 (44.23%), Postives = 34/52 (65.38%), Query Frame = 1

Query:   19 GINFDNICCTPECGTCGGTGCKTRVGGSSNCCFQKIIESDVFCGDSGVAPCI 174
            GI   ++CC+  CG+CGG+GC +R GGS +CC   +  S  +C  +G APC+
Sbjct:   65 GIQASDVCCSASCGSCGGSGCTSRDGGSESCCGGGVRASGRYCSITGEAPCM 116

[Close]

BLAST of mRNA_D-herbacea_F_contig111.963.1 vs. uniprot
Match: D8LG71_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LG71_ECTSI)

HSP 1 Score: 61.6 bits (148), Expect = 1.250e-9
Identity = 28/51 (54.90%), Postives = 35/51 (68.63%), Query Frame = 1

Query:   34 NICCTPECGTCGGTGC---KTRVGGSSNCCFQKIIESDVFCGDSGVAPCIL 177
            ++CCT ECGTCGG GC    T    +++CC  +I ES V C D+GVAPCIL
Sbjct:   38 DVCCTLECGTCGGVGCTPANTSSLTANDCCATEISESGVMCSDTGVAPCIL 88

[Close]

BLAST of mRNA_D-herbacea_F_contig111.963.1 vs. uniprot
Match: A0A6H5JVK3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVK3_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 1.740e-9
Identity = 24/52 (46.15%), Postives = 32/52 (61.54%), Query Frame = 1

Query:   19 GINFDNICCTPECGTCGGTGCKTRVGGSSNCCFQKIIESDVFCGDSGVAPCI 174
            GI   ++CC+  CG+CGG+GC  R GGS  CC   +  S  FC  +G APC+
Sbjct:    8 GIQASDVCCSASCGSCGGSGCSGRDGGSDACCGGGVRASGRFCSVTGEAPCM 59

[Close]

BLAST of mRNA_D-herbacea_F_contig111.963.1 vs. uniprot
Match: D7G3T6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3T6_ECTSI)

HSP 1 Score: 60.8 bits (146), Expect = 2.350e-9
Identity = 26/52 (50.00%), Postives = 33/52 (63.46%), Query Frame = 1

Query:   19 GINFDNICCTPECGTCGGTGCKTRVGGSSNCCFQKIIESDVFCGDSGVAPCI 174
            GI   +ICC+  CG+CGGTGC +R GGS  CC   +  S  FC  +G APC+
Sbjct:   31 GIQQSDICCSSSCGSCGGTGCTSRDGGSEACCGGGVRASGRFCSVTGEAPCM 82

[Close]

BLAST of mRNA_D-herbacea_F_contig111.963.1 vs. uniprot
Match: D7G3U7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3U7_ECTSI)

HSP 1 Score: 60.1 bits (144), Expect = 4.400e-9
Identity = 24/52 (46.15%), Postives = 33/52 (63.46%), Query Frame = 1

Query:   19 GINFDNICCTPECGTCGGTGCKTRVGGSSNCCFQKIIESDVFCGDSGVAPCI 174
            GI   ++CC+  CG+CGGTGC +R GGS  CC   +  S  +C  +G APC+
Sbjct:  195 GIQTSDVCCSASCGSCGGTGCSSRDGGSGACCGGGVRASGRYCSVTGEAPCM 246

[Close]

BLAST of mRNA_D-herbacea_F_contig111.963.1 vs. uniprot
Match: D7G5D5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5D5_ECTSI)

HSP 1 Score: 59.7 bits (143), Expect = 4.840e-9
Identity = 25/52 (48.08%), Postives = 33/52 (63.46%), Query Frame = 1

Query:   19 GINFDNICCTPECGTCGGTGCKTRVGGSSNCCFQKIIESDVFCGDSGVAPCI 174
            GI   +ICC+  CG+CGGTGC +R GGS  CC   +  S  +C  +G APC+
Sbjct:  151 GIQQSDICCSSSCGSCGGTGCTSRDGGSEACCGGGVRASGRYCSVTGEAPCM 202

[Close]

BLAST of mRNA_D-herbacea_F_contig111.963.1 vs. uniprot
Match: A0A6H5JTV1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTV1_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 6.030e-9
Identity = 24/52 (46.15%), Postives = 33/52 (63.46%), Query Frame = 1

Query:   19 GINFDNICCTPECGTCGGTGCKTRVGGSSNCCFQKIIESDVFCGDSGVAPCI 174
            GI   ++CC+  CGTCGG+GC  R GGS +CC   +  S  +C  +G APC+
Sbjct:  232 GIQSSDVCCSASCGTCGGSGCTGRDGGSESCCGGGVRASGRYCSITGEAPCM 283

The following BLAST results are available for this feature:

BLAST of mRNA_D-herbacea_F_contig111.963.1 vs. uniprot

BLAST of mRNA_D-herbacea_F_contig111.963.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 24


Match Name	E-value	Identity	Description
A0A6H5K5T3_9PHAE	2.330e-10	44.23	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K607_9PHAE	5.970e-10	44.23	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K8Q7_9PHAE	9.920e-10	44.23	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KHK8_9PHAE	1.190e-9	44.23	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D8LG71_ECTSI	1.250e-9	54.90	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]
A0A6H5JVK3_9PHAE	1.740e-9	46.15	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7G3T6_ECTSI	2.350e-9	50.00	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
D7G3U7_ECTSI	4.400e-9	46.15	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
D7G5D5_ECTSI	4.840e-9	48.08	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5JTV1_9PHAE	6.030e-9	46.15	Uncharacterized protein (Fragment) n=1 Tax=Ectocar...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
D-herbacea_F_contig111	contig	D-herbacea_F_contig111:817941..818117 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90	2022-09-19
OGS1.0 of Desmarestia herbacea DmunF female	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	1
Model size	177
Cds size	177
Stop	0
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622927525.5763507-CDS-D-herbacea_F_contig111:817940..818117	1622927525.5763507-CDS-D-herbacea_F_contig111:817940..818117	Desmarestia herbacea DmunF female	CDS	D-herbacea_F_contig111 817941..818117 +
1690790215.6812797-CDS-D-herbacea_F_contig111:817940..818117	1690790215.6812797-CDS-D-herbacea_F_contig111:817940..818117	Desmarestia herbacea DmunF female	CDS	D-herbacea_F_contig111 817941..818117 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_D-herbacea_F_contig111.963.1	prot_D-herbacea_F_contig111.963.1	Desmarestia herbacea DmunF female	polypeptide	D-herbacea_F_contig111 817941..818117 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at D-herbacea_F_contig111:817941..818117+
coding sequence from alignment at D-herbacea_F_contig111:817941..818117+

protein sequence of mRNA_D-herbacea_F_contig111.963.1

>prot_D-herbacea_F_contig111.963.1 ID=prot_D-herbacea_F_contig111.963.1|Name=mRNA_D-herbacea_F_contig111.963.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=59bp
VCDVYNGINFDNICCTPECGTCGGTGCKTRVGGSSNCCFQKIIESDVFCG
DSGVAPCIL

mRNA from alignment at D-herbacea_F_contig111:817941..818117+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_D-herbacea_F_contig111.963.1 ID=mRNA_D-herbacea_F_contig111.963.1|Name=mRNA_D-herbacea_F_contig111.963.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=177bp|location=Sequence derived from alignment at D-herbacea_F_contig111:817941..818117+ (Desmarestia herbacea DmunF female)
GTATGCGACGTGTACAACGGGATCAACTTTGACAACATTTGCTGTACTCC
TGAGTGCGGTACGTGCGGTGGAACCGGCTGTAAAACCAGGGTCGGGGGGT
CGTCCAACTGCTGCTTCCAGAAGATCATCGAATCAGACGTGTTCTGCGGG
GACTCCGGGGTGGCCCCATGCATTCTC

Coding sequence (CDS) from alignment at D-herbacea_F_contig111:817941..818117+

>mRNA_D-herbacea_F_contig111.963.1 ID=mRNA_D-herbacea_F_contig111.963.1|Name=mRNA_D-herbacea_F_contig111.963.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=354bp|location=Sequence derived from alignment at D-herbacea_F_contig111:817941..818117+ (Desmarestia herbacea DmunF female)
GTATGCGACGTGTACAACGGGATCAACTTTGACAACATTTGCTGTACTCC
TGAGTGCGGTACGTGCGGTGGAACCGGCTGTAAAACCAGGGTCGGGGGGT
CGTCCAACTGCTGCTTCCAGAAGATCATCGAATCAGACGTGTTCTGCGGG
GACTCCGGGGTGGCCCCATGCATTCTCGTATGCGACGTGTACAACGGGAT
CAACTTTGACAACATTTGCTGTACTCCTGAGTGCGGTACGTGCGGTGGAA
CCGGCTGTAAAACCAGGGTCGGGGGGTCGTCCAACTGCTGCTTCCAGAAG
ATCATCGAATCAGACGTGTTCTGCGGGGACTCCGGGGTGGCCCCATGCAT
TCTC