mRNA_D-herbacea_F_contig111.953.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig111.953.1
Unique NamemRNA_D-herbacea_F_contig111.953.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
BLAST of mRNA_D-herbacea_F_contig111.953.1 vs. uniprot
Match: D7FIJ3_ECTSI (Cupin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIJ3_ECTSI)

HSP 1 Score: 144 bits (362), Expect = 1.220e-42
Identity = 72/99 (72.73%), Postives = 82/99 (82.83%), Query Frame = 1
Query:    1 MKTSFCAAAGIIAAVGVLTPAVRAD-VITKQQQITMFNPEDFTYDLGGPAPAKLVDGIQFRGVNVNQLPALEGQGISMALVNLDPCAINLPHVHPRATE 294
            MKT FCAAAG + A G+++  V+A  V+T QQQIT+FNPEDF + LGGP P  LVDG Q R VNVNQLPAL+GQGISMALVNLDPCAINLPH+HPRATE
Sbjct:    1 MKT-FCAAAGFVIAAGLMSSTVQASGVVTAQQQITLFNPEDFVFSLGGPEPDALVDGFQIRFVNVNQLPALDGQGISMALVNLDPCAINLPHIHPRATE 98          
BLAST of mRNA_D-herbacea_F_contig111.953.1 vs. uniprot
Match: D7FI68_ECTSI (Cupin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI68_ECTSI)

HSP 1 Score: 144 bits (364), Expect = 1.470e-42
Identity = 73/100 (73.00%), Postives = 82/100 (82.00%), Query Frame = 1
Query:    1 MKTSFCAAAGIIAAVGVLTPAVRAD-VITKQQQITMFNPEDFTYDLGGPAPAKLVDGIQFRGVNVNQLPALEGQGISMALVNLDPCAINLPHVHPRATEV 297
            MKT FCAAAG + A G++   V+A  V+T QQQIT+FNPEDF + LGGP P  LVDG Q R VNVNQLPAL+GQGISMALVNLDPCAINLPH+HPRATEV
Sbjct:    1 MKT-FCAAAGFVIAAGLMPSTVQASGVVTAQQQITLFNPEDFVFSLGGPEPDALVDGFQIRFVNVNQLPALDGQGISMALVNLDPCAINLPHIHPRATEV 99          
BLAST of mRNA_D-herbacea_F_contig111.953.1 vs. uniprot
Match: A0A6H5JV79_9PHAE (Cupin type-1 domain-containing protein n=6 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JV79_9PHAE)

HSP 1 Score: 141 bits (356), Expect = 4.050e-40
Identity = 67/99 (67.68%), Postives = 78/99 (78.79%), Query Frame = 1
Query:    1 MKTSFCAAAGIIAAVGVLTPAVRADVITKQQQITMFNPEDFTYDLGGPAPAKLVDGIQFRGVNVNQLPALEGQGISMALVNLDPCAINLPHVHPRATEV 297
            MKTSFCAAAG + A G+++      V+T QQQIT++NPEDF + LGGP P  LVDG Q R   VNQLPAL+GQGISM LVNLDPCAINLPH+HPRATE+
Sbjct:    1 MKTSFCAAAGFVIAAGLMSAVQVCGVVTVQQQITLYNPEDFVFSLGGPEPDALVDGFQLRTAVVNQLPALDGQGISMGLVNLDPCAINLPHIHPRATEM 99          
BLAST of mRNA_D-herbacea_F_contig111.953.1 vs. uniprot
Match: D8LDW6_ECTSI (Cupin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDW6_ECTSI)

HSP 1 Score: 134 bits (336), Expect = 3.500e-37
Identity = 63/101 (62.38%), Postives = 78/101 (77.23%), Query Frame = 1
Query:    1 MKTSFCAAAGIIAAVGVLTPAVRAD-VITKQQQITMFNPEDFTYDLGGPAPAKLVDGIQFRGVNVNQLPALEGQGISMALVNLDPCAINLPHVHPRATEVR 300
            MKTSFC+AAG++ A G ++   +A  V+T QQQITMFNPEDF + LGGP P   VDG Q R   + Q+PAL+GQGI+MALVNLD C INLPH+HPRATE++
Sbjct:    1 MKTSFCSAAGLVVAAGFMSSTAQASGVVTAQQQITMFNPEDFVFTLGGPEPDAPVDGFQIRAATLGQIPALDGQGIAMALVNLDACTINLPHIHPRATEMQ 101          
BLAST of mRNA_D-herbacea_F_contig111.953.1 vs. uniprot
Match: A0A7S3EC99_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3EC99_9RHOD)

HSP 1 Score: 66.2 bits (160), Expect = 1.080e-11
Identity = 35/93 (37.63%), Postives = 53/93 (56.99%), Query Frame = 1
Query:   28 GIIAAVGVLTPAVRAD--VITKQQQITMF-NPEDFTYDLGGPAPAKLVDGIQFRGVNVNQLPALEGQGISMALVNLDPCAINLPHVHPRATEV 297
            G++ AV  L  +   D  +  +  +  +F N  DF +DL G   +    G + +G + ++ PAL G G+S  L  +DPC +NLPHVHPRATE+
Sbjct:    9 GLVLAVSALAVSAMYDPSIEVRDLRAELFPNASDFKFDLAGAPASDNGVGAKIQGGSQSRFPALNGLGVSYTLFTIDPCGMNLPHVHPRATEL 101          
BLAST of mRNA_D-herbacea_F_contig111.953.1 vs. uniprot
Match: A0A7S2ZJB7_9RHOD (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZJB7_9RHOD)

HSP 1 Score: 66.2 bits (160), Expect = 4.700e-11
Identity = 35/93 (37.63%), Postives = 53/93 (56.99%), Query Frame = 1
Query:   28 GIIAAVGVLTPAVRAD--VITKQQQITMF-NPEDFTYDLGGPAPAKLVDGIQFRGVNVNQLPALEGQGISMALVNLDPCAINLPHVHPRATEV 297
            G++ AV  L  +   D  +  +  +  +F N  DF +DL G   +    G + +G + ++ PAL G G+S  L  +DPC +NLPHVHPRATE+
Sbjct:    9 GLVLAVSALAVSAMYDPSIEVRDLRAELFPNASDFKFDLAGAPASDNGVGAKIQGGSQSRFPALNGLGVSYTLFTIDPCGMNLPHVHPRATEL 101          
BLAST of mRNA_D-herbacea_F_contig111.953.1 vs. uniprot
Match: A0A7S0G545_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0G545_9RHOD)

HSP 1 Score: 62.0 bits (149), Expect = 3.500e-10
Identity = 27/61 (44.26%), Postives = 39/61 (63.93%), Query Frame = 1
Query:  115 EDFTYDLGGPAPAKLVDGIQFRGVNVNQLPALEGQGISMALVNLDPCAINLPHVHPRATEV 297
            +DF ++L G   +    G + +G +  + PAL G G+S  L  +DPC +NLPHVHPRATE+
Sbjct:   24 KDFKFNLAGAPASNNGVGAKIQGGSQARFPALNGLGVSYTLFTIDPCGMNLPHVHPRATEI 84          
BLAST of mRNA_D-herbacea_F_contig111.953.1 vs. uniprot
Match: A0A0G4IUK5_PLABS (Cupin type-1 domain-containing protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4IUK5_PLABS)

HSP 1 Score: 63.9 bits (154), Expect = 4.060e-10
Identity = 29/62 (46.77%), Postives = 37/62 (59.68%), Query Frame = 1
Query:  109 NPEDFTYDLGGPAPAKLVDGIQFRGVNVNQLPALEGQGISMALVNLDPCAINLPHVHPRATE 294
            NP+ F YD   P       G   R   + +LP L G GI+++LV+L  CAIN PH+HPRATE
Sbjct:   44 NPDQFFYDFSKPVKITQGPGGSLRTCGIEELPTLAGMGIAVSLVDLKACAINNPHIHPRATE 105          
BLAST of mRNA_D-herbacea_F_contig111.953.1 vs. uniprot
Match: A0A7S0G8V0_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0G8V0_9RHOD)

HSP 1 Score: 59.3 bits (142), Expect = 5.590e-9
Identity = 28/63 (44.44%), Postives = 38/63 (60.32%), Query Frame = 1
Query:  109 NPEDFTYDLGGPAPAKLVDGIQFRGVNVNQLPALEGQGISMALVNLDPCAINLPHVHPRATEV 297
            N EDF ++L   A A    G   +  + ++ PAL G G+   L  L+PC +NLPHVHPRATE+
Sbjct:   39 NAEDFKFNLFEAAAANNGAGAMIQAGSQSRFPALNGLGLCYFLFTLEPCGMNLPHVHPRATEI 101          
BLAST of mRNA_D-herbacea_F_contig111.953.1 vs. uniprot
Match: A0A835YZF9_9STRA (RmlC-like cupin domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZF9_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 1.360e-8
Identity = 27/60 (45.00%), Postives = 38/60 (63.33%), Query Frame = 1
Query:  118 DFTYDLGGPAPAKLVDGIQFRGVNVNQLPALEGQGISMALVNLDPCAINLPHVHPRATEV 297
            DF +DL G        G   + ++  QLP+L G+ ++M  + L+PC INLPHVHPRATE+
Sbjct:    9 DFKFDLAGSTATAGNGGGSAQTLSAAQLPSLTGEKVAMVKLVLEPCGINLPHVHPRATEI 68          
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig111.953.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FIJ3_ECTSI1.220e-4272.73Cupin-like protein n=1 Tax=Ectocarpus siliculosus ... [more]
D7FI68_ECTSI1.470e-4273.00Cupin-like protein n=1 Tax=Ectocarpus siliculosus ... [more]
A0A6H5JV79_9PHAE4.050e-4067.68Cupin type-1 domain-containing protein n=6 Tax=Ect... [more]
D8LDW6_ECTSI3.500e-3762.38Cupin-like protein n=1 Tax=Ectocarpus siliculosus ... [more]
A0A7S3EC99_9RHOD1.080e-1137.63Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A7S2ZJB7_9RHOD4.700e-1137.63Hypothetical protein n=2 Tax=Rhodosorus marinus Ta... [more]
A0A7S0G545_9RHOD3.500e-1044.26Hypothetical protein (Fragment) n=1 Tax=Rhodosorus... [more]
A0A0G4IUK5_PLABS4.060e-1046.77Cupin type-1 domain-containing protein n=1 Tax=Pla... [more]
A0A7S0G8V0_9RHOD5.590e-944.44Hypothetical protein (Fragment) n=1 Tax=Rhodosorus... [more]
A0A835YZF9_9STRA1.360e-845.00RmlC-like cupin domain-containing protein n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig111contigD-herbacea_F_contig111:591036..591798 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score145.2
Seed ortholog evalue1.7e-32
Seed eggNOG ortholog2880.D8LDW5
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.nutrient reservoir activity
EggNOG OGs2BYKQ@1,2QQ4A@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size306
Cds size306
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927524.1434183-CDS-D-herbacea_F_contig111:591035..5912511622927524.1434183-CDS-D-herbacea_F_contig111:591035..591251Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig111 591036..591251 -
1690790214.9555295-CDS-D-herbacea_F_contig111:591035..5912511690790214.9555295-CDS-D-herbacea_F_contig111:591035..591251Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig111 591036..591251 -
1622927524.1554408-CDS-D-herbacea_F_contig111:591708..5917981622927524.1554408-CDS-D-herbacea_F_contig111:591708..591798Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig111 591709..591798 -
1690790214.967908-CDS-D-herbacea_F_contig111:591708..5917981690790214.967908-CDS-D-herbacea_F_contig111:591708..591798Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig111 591709..591798 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig111.953.1prot_D-herbacea_F_contig111.953.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig111 591036..591798 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig111.953.1

>prot_D-herbacea_F_contig111.953.1 ID=prot_D-herbacea_F_contig111.953.1|Name=mRNA_D-herbacea_F_contig111.953.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=102bp
MKTSFCAAAGIIAAVGVLTPAVRADVITKQQQITMFNPEDFTYDLGGPAP
AKLVDGIQFRGVNVNQLPALEGQGISMALVNLDPCAINLPHVHPRATEVR
C*
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mRNA from alignment at D-herbacea_F_contig111:591036..591798-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig111.953.1 ID=mRNA_D-herbacea_F_contig111.953.1|Name=mRNA_D-herbacea_F_contig111.953.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=763bp|location=Sequence derived from alignment at D-herbacea_F_contig111:591036..591798- (Desmarestia herbacea DmunF female)
ATGAAAACTTCCTTCTGCGCTGCTGCTGGTATCATCGCCGCTGTGGGTGT CTTGACCCCCGCTGTTCGTGCGGACGTCATTACAAAGCAGGTGAGAGATG GAGACAGGCGCAGTGATACAGGGGTTGGTTTTACGGGAGCGACGTCTGGA TGCCCGTTTTTCCCTCGCGGTACATGCAGAAGTTCGTCATTTGAGCTCTA TTCGGAGAAAGATTTTATGAACTCTTGTTAAGGCCAGAGACCTTGCCCCC GTACAGTACGATTGACGACAGAATGCAACAACAACAGCGCTTGCCTGTGT TGAAGACAGGGTTTAAAATTGAAGTAGTATCACTGCTGCTATGAGTGTTG AGTGCAGAAACGTTCGTACGCTTGCTGCCTCTGGGCGAGATGTGTTGTCT GTCTGCCTGTCTGTGCAGCCCAGACGGACAGATTCGACGGCTCGCAGCTA CCAGTGTACCGTCCAATGCACTAACCCGCTGCCGTCTGCTTTCCGCTACA CTGTCATACCCAATGCGTCTGTGTGCCGCCATCTCAAAATTTTGAAGCAA CAAATCACCATGTTCAACCCGGAGGACTTCACCTATGATCTGGGCGGCCC CGCGCCTGCCAAACTGGTCGACGGCATACAGTTCCGCGGGGTGAACGTCA ACCAGCTTCCCGCTCTGGAGGGACAGGGTATCTCCATGGCCCTTGTCAAC CTGGACCCCTGTGCAATCAACCTGCCCCACGTGCACCCGCGAGCTACGGA GGTAAGATGCTGA
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Coding sequence (CDS) from alignment at D-herbacea_F_contig111:591036..591798-

>mRNA_D-herbacea_F_contig111.953.1 ID=mRNA_D-herbacea_F_contig111.953.1|Name=mRNA_D-herbacea_F_contig111.953.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=612bp|location=Sequence derived from alignment at D-herbacea_F_contig111:591036..591798- (Desmarestia herbacea DmunF female)
ATGAAAACTTCCTTCTGCGCTGCTGCTGGTATCATCGCCGCTGTGGGTGT
CTTGACCCCCGCTGTTCGTGCGGACGTCATTACAAAGCAGATGAAAACTT
CCTTCTGCGCTGCTGCTGGTATCATCGCCGCTGTGGGTGTCTTGACCCCC
GCTGTTCGTGCGGACGTCATTACAAAGCAGCAACAAATCACCATGTTCAA
CCCGGAGGACTTCACCTATGATCTGGGCGGCCCCGCGCCTGCCAAACTGG
TCGACGGCATACAGTTCCGCGGGGTGAACGTCAACCAGCTTCCCGCTCTG
GAGGGACAGGGTATCTCCATGGCCCTTGTCAACCTGGACCCCTGTGCAAT
CAACCTGCCCCACGTGCACCCGCGAGCTACGGAGGTAAGATGCTGACAAC
AAATCACCATGTTCAACCCGGAGGACTTCACCTATGATCTGGGCGGCCCC
GCGCCTGCCAAACTGGTCGACGGCATACAGTTCCGCGGGGTGAACGTCAA
CCAGCTTCCCGCTCTGGAGGGACAGGGTATCTCCATGGCCCTTGTCAACC
TGGACCCCTGTGCAATCAACCTGCCCCACGTGCACCCGCGAGCTACGGAG
GTAAGATGCTGA
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