mRNA_D-herbacea_F_contig111.953.1 (mRNA) Desmarestia herbacea DmunF female
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Overview
Homology
BLAST of mRNA_D-herbacea_F_contig111.953.1 vs. uniprot
Match: D7FIJ3_ECTSI (Cupin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIJ3_ECTSI) HSP 1 Score: 144 bits (362), Expect = 1.220e-42 Identity = 72/99 (72.73%), Postives = 82/99 (82.83%), Query Frame = 1
Query: 1 MKTSFCAAAGIIAAVGVLTPAVRAD-VITKQQQITMFNPEDFTYDLGGPAPAKLVDGIQFRGVNVNQLPALEGQGISMALVNLDPCAINLPHVHPRATE 294
MKT FCAAAG + A G+++ V+A V+T QQQIT+FNPEDF + LGGP P LVDG Q R VNVNQLPAL+GQGISMALVNLDPCAINLPH+HPRATE
Sbjct: 1 MKT-FCAAAGFVIAAGLMSSTVQASGVVTAQQQITLFNPEDFVFSLGGPEPDALVDGFQIRFVNVNQLPALDGQGISMALVNLDPCAINLPHIHPRATE 98
BLAST of mRNA_D-herbacea_F_contig111.953.1 vs. uniprot
Match: D7FI68_ECTSI (Cupin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI68_ECTSI) HSP 1 Score: 144 bits (364), Expect = 1.470e-42 Identity = 73/100 (73.00%), Postives = 82/100 (82.00%), Query Frame = 1
Query: 1 MKTSFCAAAGIIAAVGVLTPAVRAD-VITKQQQITMFNPEDFTYDLGGPAPAKLVDGIQFRGVNVNQLPALEGQGISMALVNLDPCAINLPHVHPRATEV 297
MKT FCAAAG + A G++ V+A V+T QQQIT+FNPEDF + LGGP P LVDG Q R VNVNQLPAL+GQGISMALVNLDPCAINLPH+HPRATEV
Sbjct: 1 MKT-FCAAAGFVIAAGLMPSTVQASGVVTAQQQITLFNPEDFVFSLGGPEPDALVDGFQIRFVNVNQLPALDGQGISMALVNLDPCAINLPHIHPRATEV 99
BLAST of mRNA_D-herbacea_F_contig111.953.1 vs. uniprot
Match: A0A6H5JV79_9PHAE (Cupin type-1 domain-containing protein n=6 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JV79_9PHAE) HSP 1 Score: 141 bits (356), Expect = 4.050e-40 Identity = 67/99 (67.68%), Postives = 78/99 (78.79%), Query Frame = 1
Query: 1 MKTSFCAAAGIIAAVGVLTPAVRADVITKQQQITMFNPEDFTYDLGGPAPAKLVDGIQFRGVNVNQLPALEGQGISMALVNLDPCAINLPHVHPRATEV 297
MKTSFCAAAG + A G+++ V+T QQQIT++NPEDF + LGGP P LVDG Q R VNQLPAL+GQGISM LVNLDPCAINLPH+HPRATE+
Sbjct: 1 MKTSFCAAAGFVIAAGLMSAVQVCGVVTVQQQITLYNPEDFVFSLGGPEPDALVDGFQLRTAVVNQLPALDGQGISMGLVNLDPCAINLPHIHPRATEM 99
BLAST of mRNA_D-herbacea_F_contig111.953.1 vs. uniprot
Match: D8LDW6_ECTSI (Cupin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDW6_ECTSI) HSP 1 Score: 134 bits (336), Expect = 3.500e-37 Identity = 63/101 (62.38%), Postives = 78/101 (77.23%), Query Frame = 1
Query: 1 MKTSFCAAAGIIAAVGVLTPAVRAD-VITKQQQITMFNPEDFTYDLGGPAPAKLVDGIQFRGVNVNQLPALEGQGISMALVNLDPCAINLPHVHPRATEVR 300
MKTSFC+AAG++ A G ++ +A V+T QQQITMFNPEDF + LGGP P VDG Q R + Q+PAL+GQGI+MALVNLD C INLPH+HPRATE++
Sbjct: 1 MKTSFCSAAGLVVAAGFMSSTAQASGVVTAQQQITMFNPEDFVFTLGGPEPDAPVDGFQIRAATLGQIPALDGQGIAMALVNLDACTINLPHIHPRATEMQ 101
BLAST of mRNA_D-herbacea_F_contig111.953.1 vs. uniprot
Match: A0A7S3EC99_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3EC99_9RHOD) HSP 1 Score: 66.2 bits (160), Expect = 1.080e-11 Identity = 35/93 (37.63%), Postives = 53/93 (56.99%), Query Frame = 1
Query: 28 GIIAAVGVLTPAVRAD--VITKQQQITMF-NPEDFTYDLGGPAPAKLVDGIQFRGVNVNQLPALEGQGISMALVNLDPCAINLPHVHPRATEV 297
G++ AV L + D + + + +F N DF +DL G + G + +G + ++ PAL G G+S L +DPC +NLPHVHPRATE+
Sbjct: 9 GLVLAVSALAVSAMYDPSIEVRDLRAELFPNASDFKFDLAGAPASDNGVGAKIQGGSQSRFPALNGLGVSYTLFTIDPCGMNLPHVHPRATEL 101
BLAST of mRNA_D-herbacea_F_contig111.953.1 vs. uniprot
Match: A0A7S2ZJB7_9RHOD (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZJB7_9RHOD) HSP 1 Score: 66.2 bits (160), Expect = 4.700e-11 Identity = 35/93 (37.63%), Postives = 53/93 (56.99%), Query Frame = 1
Query: 28 GIIAAVGVLTPAVRAD--VITKQQQITMF-NPEDFTYDLGGPAPAKLVDGIQFRGVNVNQLPALEGQGISMALVNLDPCAINLPHVHPRATEV 297
G++ AV L + D + + + +F N DF +DL G + G + +G + ++ PAL G G+S L +DPC +NLPHVHPRATE+
Sbjct: 9 GLVLAVSALAVSAMYDPSIEVRDLRAELFPNASDFKFDLAGAPASDNGVGAKIQGGSQSRFPALNGLGVSYTLFTIDPCGMNLPHVHPRATEL 101
BLAST of mRNA_D-herbacea_F_contig111.953.1 vs. uniprot
Match: A0A7S0G545_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0G545_9RHOD) HSP 1 Score: 62.0 bits (149), Expect = 3.500e-10 Identity = 27/61 (44.26%), Postives = 39/61 (63.93%), Query Frame = 1
Query: 115 EDFTYDLGGPAPAKLVDGIQFRGVNVNQLPALEGQGISMALVNLDPCAINLPHVHPRATEV 297
+DF ++L G + G + +G + + PAL G G+S L +DPC +NLPHVHPRATE+
Sbjct: 24 KDFKFNLAGAPASNNGVGAKIQGGSQARFPALNGLGVSYTLFTIDPCGMNLPHVHPRATEI 84
BLAST of mRNA_D-herbacea_F_contig111.953.1 vs. uniprot
Match: A0A0G4IUK5_PLABS (Cupin type-1 domain-containing protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4IUK5_PLABS) HSP 1 Score: 63.9 bits (154), Expect = 4.060e-10 Identity = 29/62 (46.77%), Postives = 37/62 (59.68%), Query Frame = 1
Query: 109 NPEDFTYDLGGPAPAKLVDGIQFRGVNVNQLPALEGQGISMALVNLDPCAINLPHVHPRATE 294
NP+ F YD P G R + +LP L G GI+++LV+L CAIN PH+HPRATE
Sbjct: 44 NPDQFFYDFSKPVKITQGPGGSLRTCGIEELPTLAGMGIAVSLVDLKACAINNPHIHPRATE 105
BLAST of mRNA_D-herbacea_F_contig111.953.1 vs. uniprot
Match: A0A7S0G8V0_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0G8V0_9RHOD) HSP 1 Score: 59.3 bits (142), Expect = 5.590e-9 Identity = 28/63 (44.44%), Postives = 38/63 (60.32%), Query Frame = 1
Query: 109 NPEDFTYDLGGPAPAKLVDGIQFRGVNVNQLPALEGQGISMALVNLDPCAINLPHVHPRATEV 297
N EDF ++L A A G + + ++ PAL G G+ L L+PC +NLPHVHPRATE+
Sbjct: 39 NAEDFKFNLFEAAAANNGAGAMIQAGSQSRFPALNGLGLCYFLFTLEPCGMNLPHVHPRATEI 101
BLAST of mRNA_D-herbacea_F_contig111.953.1 vs. uniprot
Match: A0A835YZF9_9STRA (RmlC-like cupin domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZF9_9STRA) HSP 1 Score: 59.3 bits (142), Expect = 1.360e-8 Identity = 27/60 (45.00%), Postives = 38/60 (63.33%), Query Frame = 1
Query: 118 DFTYDLGGPAPAKLVDGIQFRGVNVNQLPALEGQGISMALVNLDPCAINLPHVHPRATEV 297
DF +DL G G + ++ QLP+L G+ ++M + L+PC INLPHVHPRATE+
Sbjct: 9 DFKFDLAGSTATAGNGGGSAQTLSAAQLPSLTGEKVAMVKLVLEPCGINLPHVHPRATEI 68 The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig111.953.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-herbacea_F_contig111.953.1 >prot_D-herbacea_F_contig111.953.1 ID=prot_D-herbacea_F_contig111.953.1|Name=mRNA_D-herbacea_F_contig111.953.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=102bp MKTSFCAAAGIIAAVGVLTPAVRADVITKQQQITMFNPEDFTYDLGGPAPback to top mRNA from alignment at D-herbacea_F_contig111:591036..591798- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-herbacea_F_contig111.953.1 ID=mRNA_D-herbacea_F_contig111.953.1|Name=mRNA_D-herbacea_F_contig111.953.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=763bp|location=Sequence derived from alignment at D-herbacea_F_contig111:591036..591798- (Desmarestia herbacea DmunF female)back to top Coding sequence (CDS) from alignment at D-herbacea_F_contig111:591036..591798- >mRNA_D-herbacea_F_contig111.953.1 ID=mRNA_D-herbacea_F_contig111.953.1|Name=mRNA_D-herbacea_F_contig111.953.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=612bp|location=Sequence derived from alignment at D-herbacea_F_contig111:591036..591798- (Desmarestia herbacea DmunF female)back to top |