mRNA_D-herbacea_F_contig111.946.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig111.946.1
Unique NamemRNA_D-herbacea_F_contig111.946.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
BLAST of mRNA_D-herbacea_F_contig111.946.1 vs. uniprot
Match: D7FIJ3_ECTSI (Cupin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIJ3_ECTSI)

HSP 1 Score: 138 bits (347), Expect = 1.320e-39
Identity = 70/99 (70.71%), Postives = 82/99 (82.83%), Query Frame = 3
Query:  138 MKTSFCASAGTIAAVGVLTPAVRAE-VVTKQQQITMYNPEDFTYDLGGPAPAKLVDGIQFRGVNVNQVPALEGQGISMALVNLDPCAINLPHVHPRATE 431
            MKT FCA+AG + A G+++  V+A  VVT QQQIT++NPEDF + LGGP P  LVDG Q R VNVNQ+PAL+GQGISMALVNLDPCAINLPH+HPRATE
Sbjct:    1 MKT-FCAAAGFVIAAGLMSSTVQASGVVTAQQQITLFNPEDFVFSLGGPEPDALVDGFQIRFVNVNQLPALDGQGISMALVNLDPCAINLPHIHPRATE 98          
BLAST of mRNA_D-herbacea_F_contig111.946.1 vs. uniprot
Match: D7FI68_ECTSI (Cupin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI68_ECTSI)

HSP 1 Score: 139 bits (349), Expect = 1.590e-39
Identity = 71/100 (71.00%), Postives = 82/100 (82.00%), Query Frame = 3
Query:  138 MKTSFCASAGTIAAVGVLTPAVRAE-VVTKQQQITMYNPEDFTYDLGGPAPAKLVDGIQFRGVNVNQVPALEGQGISMALVNLDPCAINLPHVHPRATEV 434
            MKT FCA+AG + A G++   V+A  VVT QQQIT++NPEDF + LGGP P  LVDG Q R VNVNQ+PAL+GQGISMALVNLDPCAINLPH+HPRATEV
Sbjct:    1 MKT-FCAAAGFVIAAGLMPSTVQASGVVTAQQQITLFNPEDFVFSLGGPEPDALVDGFQIRFVNVNQLPALDGQGISMALVNLDPCAINLPHIHPRATEV 99          
BLAST of mRNA_D-herbacea_F_contig111.946.1 vs. uniprot
Match: A0A6H5JV79_9PHAE (Cupin type-1 domain-containing protein n=6 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JV79_9PHAE)

HSP 1 Score: 138 bits (347), Expect = 5.230e-38
Identity = 67/99 (67.68%), Postives = 78/99 (78.79%), Query Frame = 3
Query:  138 MKTSFCASAGTIAAVGVLTPAVRAEVVTKQQQITMYNPEDFTYDLGGPAPAKLVDGIQFRGVNVNQVPALEGQGISMALVNLDPCAINLPHVHPRATEV 434
            MKTSFCA+AG + A G+++      VVT QQQIT+YNPEDF + LGGP P  LVDG Q R   VNQ+PAL+GQGISM LVNLDPCAINLPH+HPRATE+
Sbjct:    1 MKTSFCAAAGFVIAAGLMSAVQVCGVVTVQQQITLYNPEDFVFSLGGPEPDALVDGFQLRTAVVNQLPALDGQGISMGLVNLDPCAINLPHIHPRATEM 99          
BLAST of mRNA_D-herbacea_F_contig111.946.1 vs. uniprot
Match: D8LDW6_ECTSI (Cupin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDW6_ECTSI)

HSP 1 Score: 129 bits (324), Expect = 1.250e-34
Identity = 62/101 (61.39%), Postives = 77/101 (76.24%), Query Frame = 3
Query:  138 MKTSFCASAGTIAAVGVLTPAVRAE-VVTKQQQITMYNPEDFTYDLGGPAPAKLVDGIQFRGVNVNQVPALEGQGISMALVNLDPCAINLPHVHPRATEVR 437
            MKTSFC++AG + A G ++   +A  VVT QQQITM+NPEDF + LGGP P   VDG Q R   + Q+PAL+GQGI+MALVNLD C INLPH+HPRATE++
Sbjct:    1 MKTSFCSAAGLVVAAGFMSSTAQASGVVTAQQQITMFNPEDFVFTLGGPEPDAPVDGFQIRAATLGQIPALDGQGIAMALVNLDACTINLPHIHPRATEMQ 101          
BLAST of mRNA_D-herbacea_F_contig111.946.1 vs. uniprot
Match: A0A7S3EC99_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3EC99_9RHOD)

HSP 1 Score: 64.3 bits (155), Expect = 2.420e-10
Identity = 29/63 (46.03%), Postives = 40/63 (63.49%), Query Frame = 3
Query:  246 NPEDFTYDLGGPAPAKLVDGIQFRGVNVNQVPALEGQGISMALVNLDPCAINLPHVHPRATEV 434
            N  DF +DL G   +    G + +G + ++ PAL G G+S  L  +DPC +NLPHVHPRATE+
Sbjct:   39 NASDFKFDLAGAPASDNGVGAKIQGGSQSRFPALNGLGVSYTLFTIDPCGMNLPHVHPRATEL 101          
BLAST of mRNA_D-herbacea_F_contig111.946.1 vs. uniprot
Match: A0A7S2ZJB7_9RHOD (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZJB7_9RHOD)

HSP 1 Score: 64.3 bits (155), Expect = 1.010e-9
Identity = 29/63 (46.03%), Postives = 40/63 (63.49%), Query Frame = 3
Query:  246 NPEDFTYDLGGPAPAKLVDGIQFRGVNVNQVPALEGQGISMALVNLDPCAINLPHVHPRATEV 434
            N  DF +DL G   +    G + +G + ++ PAL G G+S  L  +DPC +NLPHVHPRATE+
Sbjct:   39 NASDFKFDLAGAPASDNGVGAKIQGGSQSRFPALNGLGVSYTLFTIDPCGMNLPHVHPRATEL 101          
BLAST of mRNA_D-herbacea_F_contig111.946.1 vs. uniprot
Match: A0A7S0G545_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0G545_9RHOD)

HSP 1 Score: 61.2 bits (147), Expect = 2.700e-9
Identity = 27/61 (44.26%), Postives = 39/61 (63.93%), Query Frame = 3
Query:  252 EDFTYDLGGPAPAKLVDGIQFRGVNVNQVPALEGQGISMALVNLDPCAINLPHVHPRATEV 434
            +DF ++L G   +    G + +G +  + PAL G G+S  L  +DPC +NLPHVHPRATE+
Sbjct:   24 KDFKFNLAGAPASNNGVGAKIQGGSQARFPALNGLGVSYTLFTIDPCGMNLPHVHPRATEI 84          
BLAST of mRNA_D-herbacea_F_contig111.946.1 vs. uniprot
Match: A0A0G4IUK5_PLABS (Cupin type-1 domain-containing protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4IUK5_PLABS)

HSP 1 Score: 62.0 bits (149), Expect = 8.440e-9
Identity = 28/62 (45.16%), Postives = 37/62 (59.68%), Query Frame = 3
Query:  246 NPEDFTYDLGGPAPAKLVDGIQFRGVNVNQVPALEGQGISMALVNLDPCAINLPHVHPRATE 431
            NP+ F YD   P       G   R   + ++P L G GI+++LV+L  CAIN PH+HPRATE
Sbjct:   44 NPDQFFYDFSKPVKITQGPGGSLRTCGIEELPTLAGMGIAVSLVDLKACAINNPHIHPRATE 105          
BLAST of mRNA_D-herbacea_F_contig111.946.1 vs. uniprot
Match: A0A7S0G8V0_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0G8V0_9RHOD)

HSP 1 Score: 58.2 bits (139), Expect = 5.830e-8
Identity = 28/63 (44.44%), Postives = 38/63 (60.32%), Query Frame = 3
Query:  246 NPEDFTYDLGGPAPAKLVDGIQFRGVNVNQVPALEGQGISMALVNLDPCAINLPHVHPRATEV 434
            N EDF ++L   A A    G   +  + ++ PAL G G+   L  L+PC +NLPHVHPRATE+
Sbjct:   39 NAEDFKFNLFEAAAANNGAGAMIQAGSQSRFPALNGLGLCYFLFTLEPCGMNLPHVHPRATEI 101          
BLAST of mRNA_D-herbacea_F_contig111.946.1 vs. uniprot
Match: A0A835YZF9_9STRA (RmlC-like cupin domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZF9_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 1.950e-7
Identity = 26/60 (43.33%), Postives = 38/60 (63.33%), Query Frame = 3
Query:  255 DFTYDLGGPAPAKLVDGIQFRGVNVNQVPALEGQGISMALVNLDPCAINLPHVHPRATEV 434
            DF +DL G        G   + ++  Q+P+L G+ ++M  + L+PC INLPHVHPRATE+
Sbjct:    9 DFKFDLAGSTATAGNGGGSAQTLSAAQLPSLTGEKVAMVKLVLEPCGINLPHVHPRATEI 68          
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig111.946.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FIJ3_ECTSI1.320e-3970.71Cupin-like protein n=1 Tax=Ectocarpus siliculosus ... [more]
D7FI68_ECTSI1.590e-3971.00Cupin-like protein n=1 Tax=Ectocarpus siliculosus ... [more]
A0A6H5JV79_9PHAE5.230e-3867.68Cupin type-1 domain-containing protein n=6 Tax=Ect... [more]
D8LDW6_ECTSI1.250e-3461.39Cupin-like protein n=1 Tax=Ectocarpus siliculosus ... [more]
A0A7S3EC99_9RHOD2.420e-1046.03Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A7S2ZJB7_9RHOD1.010e-946.03Hypothetical protein n=2 Tax=Rhodosorus marinus Ta... [more]
A0A7S0G545_9RHOD2.700e-944.26Hypothetical protein (Fragment) n=1 Tax=Rhodosorus... [more]
A0A0G4IUK5_PLABS8.440e-945.16Cupin type-1 domain-containing protein n=1 Tax=Pla... [more]
A0A7S0G8V0_9RHOD5.830e-844.44Hypothetical protein (Fragment) n=1 Tax=Rhodosorus... [more]
A0A835YZF9_9STRA1.950e-743.33RmlC-like cupin domain-containing protein n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig111contigD-herbacea_F_contig111:433240..434305 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score141.7
Seed ortholog evalue1.8e-31
Seed eggNOG ortholog2880.D8LDW5
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.nutrient reservoir activity
EggNOG OGs2BYKQ@1,2QQ4A@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size443
Cds size306
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig111.946.1prot_D-herbacea_F_contig111.946.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig111 433377..434305 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927523.596072-UTR-D-herbacea_F_contig111:433239..4333761622927523.596072-UTR-D-herbacea_F_contig111:433239..433376Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig111 433240..433376 +
1690790214.6796858-UTR-D-herbacea_F_contig111:433239..4333761690790214.6796858-UTR-D-herbacea_F_contig111:433239..433376Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig111 433240..433376 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927523.607594-CDS-D-herbacea_F_contig111:433376..4334661622927523.607594-CDS-D-herbacea_F_contig111:433376..433466Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig111 433377..433466 +
1690790214.6900332-CDS-D-herbacea_F_contig111:433376..4334661690790214.6900332-CDS-D-herbacea_F_contig111:433376..433466Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig111 433377..433466 +
1622927523.6182294-CDS-D-herbacea_F_contig111:434089..4343051622927523.6182294-CDS-D-herbacea_F_contig111:434089..434305Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig111 434090..434305 +
1690790214.6997435-CDS-D-herbacea_F_contig111:434089..4343051690790214.6997435-CDS-D-herbacea_F_contig111:434089..434305Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig111 434090..434305 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig111.946.1

>prot_D-herbacea_F_contig111.946.1 ID=prot_D-herbacea_F_contig111.946.1|Name=mRNA_D-herbacea_F_contig111.946.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=102bp
MKTSFCASAGTIAAVGVLTPAVRAEVVTKQQQITMYNPEDFTYDLGGPAP
AKLVDGIQFRGVNVNQVPALEGQGISMALVNLDPCAINLPHVHPRATEVR
R*
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mRNA from alignment at D-herbacea_F_contig111:433240..434305+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig111.946.1 ID=mRNA_D-herbacea_F_contig111.946.1|Name=mRNA_D-herbacea_F_contig111.946.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=1066bp|location=Sequence derived from alignment at D-herbacea_F_contig111:433240..434305+ (Desmarestia herbacea DmunF female)
ACCACCTCTTCTGATTCAGCAAGCACACTGAAATCTCGATCTTTCCTCTG CTGCTCCCTGCCCTACTACTAGTAATACTACACATAGCAATACCAACTTT CAAGAATCACCCACAGAGTCAACCTATTTCTACAGTCATGAAAACTTCCT TCTGCGCTTCTGCTGGTACCATCGCCGCTGTAGGTGTCTTGACCCCCGCT GTTCGTGCTGAGGTCGTTACAAAGCAGGTGAGAGCTGGAGACAGGCGCAA TTGTATAGGGGTTGGTTTTACAGGAGCGATATCTGGTTGCCCGTTTTCCT CTCGCGGAACATGTAGAAGCTCGTCGTGTGAAGTCTATTTGGAGTAAAGA TTTATGAACTCTTCTGTCTGGCTTACGACAAAGCTCGATGCCTATAATGA TAACAATAGCTTGCCCCCGTACGATTGTCGACAGAGTGCAAAGACAGCGT TTGCCTGTGTTGAAGGCATGGTTTGAACTTGAAGTCGTATGACTACTGCT ATGAGTGTTTTGAGTGCAGAAACGTTCGTATGATTGCTGCCTCTGGGGCG AGATGTGTTGCCTGTGCTCTGCCCAGGTCGACAGATTCCGCGCCTCGCAG TTATTATTATTATTTGTCTTCCCTGTTTACGACCTATATATAGTTAATTT TTCAACACGTACCCCCTTGCTTACTTGACCTTTTTCTTACCAGTACTTTT CGATCAGTTACTTGTATCATACGAGATTTACATCACAAGTATACGGCGTT AGTCCAAAACGTCCGATCAATGCACTAACTCGCCGCCCTCTGCTGTCCGC TACACTACCCGCAATGCGTTTTTTTGTGCTGTCATCTTACGAATTTGCAG CAACAAATCACCATGTACAACCCGGAGGACTTCACCTATGATCTGGGTGG CCCAGCGCCTGCCAAACTGGTCGATGGCATACAGTTCCGCGGGGTGAACG TCAACCAGGTTCCCGCTCTGGAGGGACAGGGCATCTCCATGGCTCTTGTC AACCTGGACCCCTGCGCGATCAACCTGCCCCACGTGCACCCGCGCGCCAC GGAGGTAAGACGATGA
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Coding sequence (CDS) from alignment at D-herbacea_F_contig111:433240..434305+

>mRNA_D-herbacea_F_contig111.946.1 ID=mRNA_D-herbacea_F_contig111.946.1|Name=mRNA_D-herbacea_F_contig111.946.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=612bp|location=Sequence derived from alignment at D-herbacea_F_contig111:433240..434305+ (Desmarestia herbacea DmunF female)
ATGAAAACTTCCTTCTGCGCTTCTGCTGGTACCATCGCCGCTGTAGGTGT
CTTGACCCCCGCTGTTCGTGCTGAGGTCGTTACAAAGCAGATGAAAACTT
CCTTCTGCGCTTCTGCTGGTACCATCGCCGCTGTAGGTGTCTTGACCCCC
GCTGTTCGTGCTGAGGTCGTTACAAAGCAGCAACAAATCACCATGTACAA
CCCGGAGGACTTCACCTATGATCTGGGTGGCCCAGCGCCTGCCAAACTGG
TCGATGGCATACAGTTCCGCGGGGTGAACGTCAACCAGGTTCCCGCTCTG
GAGGGACAGGGCATCTCCATGGCTCTTGTCAACCTGGACCCCTGCGCGAT
CAACCTGCCCCACGTGCACCCGCGCGCCACGGAGGTAAGACGATGACAAC
AAATCACCATGTACAACCCGGAGGACTTCACCTATGATCTGGGTGGCCCA
GCGCCTGCCAAACTGGTCGATGGCATACAGTTCCGCGGGGTGAACGTCAA
CCAGGTTCCCGCTCTGGAGGGACAGGGCATCTCCATGGCTCTTGTCAACC
TGGACCCCTGCGCGATCAACCTGCCCCACGTGCACCCGCGCGCCACGGAG
GTAAGACGATGA
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