mRNA_D-herbacea_F_contig111.946.1 (mRNA) Desmarestia herbacea DmunF female
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Overview
Homology
BLAST of mRNA_D-herbacea_F_contig111.946.1 vs. uniprot
Match: D7FIJ3_ECTSI (Cupin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIJ3_ECTSI) HSP 1 Score: 138 bits (347), Expect = 1.320e-39 Identity = 70/99 (70.71%), Postives = 82/99 (82.83%), Query Frame = 3
Query: 138 MKTSFCASAGTIAAVGVLTPAVRAE-VVTKQQQITMYNPEDFTYDLGGPAPAKLVDGIQFRGVNVNQVPALEGQGISMALVNLDPCAINLPHVHPRATE 431
MKT FCA+AG + A G+++ V+A VVT QQQIT++NPEDF + LGGP P LVDG Q R VNVNQ+PAL+GQGISMALVNLDPCAINLPH+HPRATE
Sbjct: 1 MKT-FCAAAGFVIAAGLMSSTVQASGVVTAQQQITLFNPEDFVFSLGGPEPDALVDGFQIRFVNVNQLPALDGQGISMALVNLDPCAINLPHIHPRATE 98
BLAST of mRNA_D-herbacea_F_contig111.946.1 vs. uniprot
Match: D7FI68_ECTSI (Cupin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI68_ECTSI) HSP 1 Score: 139 bits (349), Expect = 1.590e-39 Identity = 71/100 (71.00%), Postives = 82/100 (82.00%), Query Frame = 3
Query: 138 MKTSFCASAGTIAAVGVLTPAVRAE-VVTKQQQITMYNPEDFTYDLGGPAPAKLVDGIQFRGVNVNQVPALEGQGISMALVNLDPCAINLPHVHPRATEV 434
MKT FCA+AG + A G++ V+A VVT QQQIT++NPEDF + LGGP P LVDG Q R VNVNQ+PAL+GQGISMALVNLDPCAINLPH+HPRATEV
Sbjct: 1 MKT-FCAAAGFVIAAGLMPSTVQASGVVTAQQQITLFNPEDFVFSLGGPEPDALVDGFQIRFVNVNQLPALDGQGISMALVNLDPCAINLPHIHPRATEV 99
BLAST of mRNA_D-herbacea_F_contig111.946.1 vs. uniprot
Match: A0A6H5JV79_9PHAE (Cupin type-1 domain-containing protein n=6 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JV79_9PHAE) HSP 1 Score: 138 bits (347), Expect = 5.230e-38 Identity = 67/99 (67.68%), Postives = 78/99 (78.79%), Query Frame = 3
Query: 138 MKTSFCASAGTIAAVGVLTPAVRAEVVTKQQQITMYNPEDFTYDLGGPAPAKLVDGIQFRGVNVNQVPALEGQGISMALVNLDPCAINLPHVHPRATEV 434
MKTSFCA+AG + A G+++ VVT QQQIT+YNPEDF + LGGP P LVDG Q R VNQ+PAL+GQGISM LVNLDPCAINLPH+HPRATE+
Sbjct: 1 MKTSFCAAAGFVIAAGLMSAVQVCGVVTVQQQITLYNPEDFVFSLGGPEPDALVDGFQLRTAVVNQLPALDGQGISMGLVNLDPCAINLPHIHPRATEM 99
BLAST of mRNA_D-herbacea_F_contig111.946.1 vs. uniprot
Match: D8LDW6_ECTSI (Cupin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDW6_ECTSI) HSP 1 Score: 129 bits (324), Expect = 1.250e-34 Identity = 62/101 (61.39%), Postives = 77/101 (76.24%), Query Frame = 3
Query: 138 MKTSFCASAGTIAAVGVLTPAVRAE-VVTKQQQITMYNPEDFTYDLGGPAPAKLVDGIQFRGVNVNQVPALEGQGISMALVNLDPCAINLPHVHPRATEVR 437
MKTSFC++AG + A G ++ +A VVT QQQITM+NPEDF + LGGP P VDG Q R + Q+PAL+GQGI+MALVNLD C INLPH+HPRATE++
Sbjct: 1 MKTSFCSAAGLVVAAGFMSSTAQASGVVTAQQQITMFNPEDFVFTLGGPEPDAPVDGFQIRAATLGQIPALDGQGIAMALVNLDACTINLPHIHPRATEMQ 101
BLAST of mRNA_D-herbacea_F_contig111.946.1 vs. uniprot
Match: A0A7S3EC99_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3EC99_9RHOD) HSP 1 Score: 64.3 bits (155), Expect = 2.420e-10 Identity = 29/63 (46.03%), Postives = 40/63 (63.49%), Query Frame = 3
Query: 246 NPEDFTYDLGGPAPAKLVDGIQFRGVNVNQVPALEGQGISMALVNLDPCAINLPHVHPRATEV 434
N DF +DL G + G + +G + ++ PAL G G+S L +DPC +NLPHVHPRATE+
Sbjct: 39 NASDFKFDLAGAPASDNGVGAKIQGGSQSRFPALNGLGVSYTLFTIDPCGMNLPHVHPRATEL 101
BLAST of mRNA_D-herbacea_F_contig111.946.1 vs. uniprot
Match: A0A7S2ZJB7_9RHOD (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZJB7_9RHOD) HSP 1 Score: 64.3 bits (155), Expect = 1.010e-9 Identity = 29/63 (46.03%), Postives = 40/63 (63.49%), Query Frame = 3
Query: 246 NPEDFTYDLGGPAPAKLVDGIQFRGVNVNQVPALEGQGISMALVNLDPCAINLPHVHPRATEV 434
N DF +DL G + G + +G + ++ PAL G G+S L +DPC +NLPHVHPRATE+
Sbjct: 39 NASDFKFDLAGAPASDNGVGAKIQGGSQSRFPALNGLGVSYTLFTIDPCGMNLPHVHPRATEL 101
BLAST of mRNA_D-herbacea_F_contig111.946.1 vs. uniprot
Match: A0A7S0G545_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0G545_9RHOD) HSP 1 Score: 61.2 bits (147), Expect = 2.700e-9 Identity = 27/61 (44.26%), Postives = 39/61 (63.93%), Query Frame = 3
Query: 252 EDFTYDLGGPAPAKLVDGIQFRGVNVNQVPALEGQGISMALVNLDPCAINLPHVHPRATEV 434
+DF ++L G + G + +G + + PAL G G+S L +DPC +NLPHVHPRATE+
Sbjct: 24 KDFKFNLAGAPASNNGVGAKIQGGSQARFPALNGLGVSYTLFTIDPCGMNLPHVHPRATEI 84
BLAST of mRNA_D-herbacea_F_contig111.946.1 vs. uniprot
Match: A0A0G4IUK5_PLABS (Cupin type-1 domain-containing protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4IUK5_PLABS) HSP 1 Score: 62.0 bits (149), Expect = 8.440e-9 Identity = 28/62 (45.16%), Postives = 37/62 (59.68%), Query Frame = 3
Query: 246 NPEDFTYDLGGPAPAKLVDGIQFRGVNVNQVPALEGQGISMALVNLDPCAINLPHVHPRATE 431
NP+ F YD P G R + ++P L G GI+++LV+L CAIN PH+HPRATE
Sbjct: 44 NPDQFFYDFSKPVKITQGPGGSLRTCGIEELPTLAGMGIAVSLVDLKACAINNPHIHPRATE 105
BLAST of mRNA_D-herbacea_F_contig111.946.1 vs. uniprot
Match: A0A7S0G8V0_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0G8V0_9RHOD) HSP 1 Score: 58.2 bits (139), Expect = 5.830e-8 Identity = 28/63 (44.44%), Postives = 38/63 (60.32%), Query Frame = 3
Query: 246 NPEDFTYDLGGPAPAKLVDGIQFRGVNVNQVPALEGQGISMALVNLDPCAINLPHVHPRATEV 434
N EDF ++L A A G + + ++ PAL G G+ L L+PC +NLPHVHPRATE+
Sbjct: 39 NAEDFKFNLFEAAAANNGAGAMIQAGSQSRFPALNGLGLCYFLFTLEPCGMNLPHVHPRATEI 101
BLAST of mRNA_D-herbacea_F_contig111.946.1 vs. uniprot
Match: A0A835YZF9_9STRA (RmlC-like cupin domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZF9_9STRA) HSP 1 Score: 57.8 bits (138), Expect = 1.950e-7 Identity = 26/60 (43.33%), Postives = 38/60 (63.33%), Query Frame = 3
Query: 255 DFTYDLGGPAPAKLVDGIQFRGVNVNQVPALEGQGISMALVNLDPCAINLPHVHPRATEV 434
DF +DL G G + ++ Q+P+L G+ ++M + L+PC INLPHVHPRATE+
Sbjct: 9 DFKFDLAGSTATAGNGGGSAQTLSAAQLPSLTGEKVAMVKLVLEPCGINLPHVHPRATEI 68 The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig111.946.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-herbacea_F_contig111.946.1 >prot_D-herbacea_F_contig111.946.1 ID=prot_D-herbacea_F_contig111.946.1|Name=mRNA_D-herbacea_F_contig111.946.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=102bp MKTSFCASAGTIAAVGVLTPAVRAEVVTKQQQITMYNPEDFTYDLGGPAPback to top mRNA from alignment at D-herbacea_F_contig111:433240..434305+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-herbacea_F_contig111.946.1 ID=mRNA_D-herbacea_F_contig111.946.1|Name=mRNA_D-herbacea_F_contig111.946.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=1066bp|location=Sequence derived from alignment at D-herbacea_F_contig111:433240..434305+ (Desmarestia herbacea DmunF female)back to top Coding sequence (CDS) from alignment at D-herbacea_F_contig111:433240..434305+ >mRNA_D-herbacea_F_contig111.946.1 ID=mRNA_D-herbacea_F_contig111.946.1|Name=mRNA_D-herbacea_F_contig111.946.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=612bp|location=Sequence derived from alignment at D-herbacea_F_contig111:433240..434305+ (Desmarestia herbacea DmunF female)back to top |